Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        <-----------GT1                                                                                     <---------ARR14(2)                                                                                     --------->ARR14(2)                                                                                    <----------TaMYB80                                                                                   --------->ARR14(2) ---------MYB52(1)                                                              <---------ANAC46 -------ANAC58                                 ------->GAMYB               --------->DAG2 -------ANAC58              <---------AHL20(2)--------->ANAC58            ---------->DOF2    -------- -AHL20(2)               --------->TOE2(3)    --------->ANAC58 ---------->DOF2 <-------TEIL  <------- >AHL20(2)    ----------->RAV1(1)<-----------GT1     <-----------GT1   --------->AHL20(2)  <---------   tcgtttttttttggggcaacaaaactttcttaaatttacaaaactacaacggaatttacaaattacaaagacattaaaaagttcgtatatactcttttat  2025000                                                                               <---------TOE2(3)                                                                     <---------YAB1                                                                   --------->AHL20(2)                                                                   <---------AHL20(2)                                                                  <---------AHL20(2)                                                               --------->AHL20(2)                                          <----------DOF2      <---------AHL20(2)                                       <-----------GT1        <---------AHL20(1)                                      <-----------GT1         --------->AHL20(2)       -------------- ->AHL20(2)                <---------GLK1(2)                  <---------AHL20(2)       <------------- --AHL20(2) <---------ARR11(3)       <---------AHL20(2)--------->GLK1(1)     ---------->DOF2     <--- -DOF2     --------->RVE1(1)--------->GLK1(2)   <---------YAB1--------->AHL20(1) <------ZmHOX2a(1)   tagtttcgactaaatatcgtattagaacagaatctatattttatctttttatcagagatttcaatttatttatttttgacaaaggattacctcatgtagt  2025100                                                                                        <---------YAB1                                                                                     <---------YAB1                                                                                  --------->AHL20(1)                             <---------ANAC46                                    --------->AHL20(2)                          ----------->TGA1                                       --------->YAB1                          ----------->HVH21          ------>NtERF2     <---------ARR14(2) ->AGL15             --------->YAB1                 --------->ANAC46   --------->ARR14(2)<-----------RAV1(1) --AGL15            <---------YAB1     <---------HSFB2a(2)       --------->ARR14(2)  <---------AHL20(2) ------MYB46(3)   --------->YAB1       --------->HSFB2a(2)       <---------ARR14(2) <---------AHL20(1)   tgttgccaacttgccattaaccatgatagtgacgcaggcttccaaaacatttcgacgcgagagccactatccgaatacttgaataatattattgttgcga  2025200                                               --------->ATHB12                                               -------->ATHB1                                               --------->ATHB51                                               <---------ICU4                                              <---------AHL20(2)                                              --------->ICU4                                              --------->AHL20(1)                                              <---------ATHB51                                              <---------YAB1         --------->ANAC46                                      --------->YAB1                 --------->ANAC55(2)                                   <---------ICU4                <---------AHL20(2)                                   --------->YAB1              ----------->TBP                                 --------->AHL20(2)           <---------AHL20(1)                              <---------AHL20(2)              --------->AHL20(1)    <---------MYB46(3)         --------->ARR11(3)   --------->AHL20(2)         ------------>CBF         <---------At4g35610         <---------ARR11(3)   --------->AHL20(1)        <-----------GT1----------->HVH21     <-------     ---------->DOF2       --------->YAB1   --------->YAB1    <---------ARR11(3)  --------->At4g35610   ttttttaaaaaggtcttgctgatggccaaaaataaaataataacaaaaattattgtatatacaatatataaacgtgacaaaatgagctgttgaatatgat  2025300                                                                          --------->ZAT18                                                            xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                                            <---------At4g35610                                                            --------->At4g35610                                                         xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                        xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                        xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        <---------REM1(1) <---------ZAT18                                                        xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                       xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                       xxxxxxxxxxxxxxx>smallRNA(le3)                                                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                       xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                       xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                       xxxxxxxxxxxxxxx>smallRNA(fl3)                                                       xxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                       xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                       xxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                       xxxxxxxxxxxxxxxx>smallRNA(i)                                                       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                       xxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                       xxxxxxxxxxxxxxxx>smallRNA(s)                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                       xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                       xxxxxxxxxxxxxxxx>smallRNA(si3)                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                       xxxxxxxxxxxxxxxxx>smallRNA(le3)                                                       xxxxxxxxxxxxxxx>smallRNA(si3)                                                       *TSS------->TEIL---------->DOF2                                                       xxxxxxxxxxxxxxxxxx>smallRNA(si3)             <                                                       xxxxxxxxxxxxxxxxxxx>smallRNA(si3)           <-                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <-                                                       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <--                                                       xxxxxxxxxxxxxxxxx>smallRNA(si3)           ----                                                       xxxxxxxxxxxxxxxxxxx>smallRNA(se3)         ----                                <------------CBF       xxxxxxxxxxxxxxxxx>smallRNA(se3)          <----                     --------->AHL20(2)                xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxx                     <---------AHL20(2)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxx                    <---------AHL20(2)                 xxxxxxxxxxxxxxx>smallRNA(se3)        xxxxxxxxx                    --------->AHL20(2)                 xxxxxxxxxxxxxxxx>smallRNA(se3)       xxxxxxxxx                    --------->AHL20(1)                 xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   xxxxxxxxx                 --------->AHL20(2)                    xxxxxxxxxxxxxxxxxxx>smallRNA(le3)    xxxxxxxxx                 <---------AHL20(2)                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxx                <---------AHL20(2)                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxx                --------->AHL20(2)                    xxxxxxxxxxxxxxxx>smallRNA(s)          xxxxxxxxx               <---------AHL20(2)                    xxxxxxxxxxxxxxxx>smallRNA(s)           xxxxxxxxx           <---------CCA1(2) ------------>CBF     <---------LBD16      xxxxxxxxxxxxxxxx>smallRNA(se3)   <---------ZAT14  <---------AHL20(1)       <-----------HVH21   <---------At4g35610  <---------ANAC58 --YAB1  <---------ANAC46  <-----------GT1   <-----------TGA1  <-----------RAV1(2)    <---------ANAC58   actagtatagttcgtatattaatttattttgaccaattgtacattttcgtcatcggggatgtagctcagatggtagagcgctcgcttagcatgcgagagg  2025400                  --------->At4g35610                  --------->GLK1(1)              --------->ANAC58              --------->ANAC46        xxxxxxxxxxxxxxxx>smallRNA(s)      ===============================HOX2a_HOX2a                           ------->MYC2      xxxxxxxxxxxxxxxx>smallRNA(i)                                         <-------MYC3      ------>ZmHOX2a(2)                                                    ------->MYC3     xxxxxxxxxxxxxxxx>smallRNA(s)                                          <-------PIF5    <---------ARR14(2)                                                     <-------MYC2    --------->ARR14(2)                                                     ------->PIF5 ---------LBD16  ------->TEIL                                              ------->MYC4 --------TOE1(1)<---------ALFIN1                                          --------->PIF3(3) --------ANAC46--------->LBD16                                            --------->O2 -----TEIL   --------->ANAC46                         <---------ANAC58    <---------TGA1a ----->ALFIN1<---------LBD16                      <---------AHL20(2)      --------->TGA1a ----->CCA1(2)--------->ANAC58                  <---------YAB1            <---------O2 -----SPL7 xxxxxxxxxxxxxxxx>smallRNA(le3)     <---------ICU4              <---------PIF3(3) xxxxxxxxx>smallRNA(se3)                     <---------YAB1             <---------ALFIN1 xxxxxxxx>smallRNA(se3)                      --------->ICU4            ---------------->PIF3(2) xxxxxxx>smallRNA(s)                       <--------HAHB4       --------->ARR14(2) xxxxxxx>smallRNA(se3)                     <---------ICU4      <---------MYB52(1)         --------->AHL20(2) xxxxxxx>smallRNA(si3)                     --------->YAB1     --------->LBD16      ----------->GT1 xxxxxx>smallRNA(se3)                     --------->ICU4     --------->LBD16--------->ALFIN1 xxxxxxx>smallRNA(le3)        ------>ZmHOX2a(1)<---------AHL20(1)    <-----------------AGL1   ------- xxxxxx>smallRNA(le3)         <---------------AGL15   <---------ANAC58----------------->AGL1 <------- xxxxxxxxx>smallRNA(le3)      --------------->AGL15 <-----------GT1<-----------GT1 <---------ANAC55(2) xxxxxxx>smallRNA(i)       <-----------GT1<---------YAB1    <---------LBD16<-------MYC4   --------->ATHB51   tacggggatcgataccccgcatctccattttcctattttttgttatcattattttttcttgtcccggtttttccccacgtgggaaacgtgaataatttaa  2025500                                                                                     ------>MYB83                                                                                     ------>MYB46(1)                                                                                    --------->MYB52(1)                                                                                  <---------MYB55(2)                                                                                  --------->MYB46(3)                                                                      <------ZmHOX2a(2)                                      ----------->GT1                 --------->CCA1(2)                                 --------->WRKY45                    --------->ARR11(3)        ------->TEIL             --------->WRKY38(1)                 <---------ARR14(2)    <---------    --------------->AtSPL8       --------->WRKY12                    <---------ARR11(3) ------------>CBF    <---------------AtSPL3      --------->DOF5.7(2)                  --------->ARR14(2)------->GAMYB -->AHL20(2)                   <-------GAMYB                  <---------ZAT6      <---------MYB52(2) --AHL20(2)                   <---------MYB46(3)  <-----------GT1    --------->AGP1--------->AtMYB61*TSS   ctaagacatgtacttcttctcatctatcttcgtcgttgactcgtgaaacttttgacaacttgtagtattaagatccaacttcaaaccaacggcaattgca  2025600                                         <---------ALFIN1                                        --------->ZAT14                                        --------->ZAT18         --------->ANAC58               <---------ZAT14                                       -------         --------->ANAC58               <---------ZAT18                                   <---------ANAC58         --------->ANAC46            --------->At4g35610                                  <---------ANAC58   <---------At4g35610        --------->LBD16                   ---------->DOF2           <---------ANAC46   --------->At4g35610       <---------HSFB2a(2)        --------->ZAT6     --------->ANAC46 --------- ---CBF---------->DOF2       --------->HSFB2a(2) ------>ZmHOX2a(2)   <----------DOF2  --------->DEAR3(2)   ttttcagctaaaagcaatggagtcatcacttccccaagttgctgcacttgatcgttcaactctactcaaagctttcgacgagactaaaaccggcgtgaaa  2025700                                                  --------->LBD16                                                  ------>NtERF2              --------->ARR14(2)                <---------LBD16                          --------->GLK1(1)             <------NtERF2                    --------->AtMYB61                     ------>ZmHOX2a(1)            --------->LBD16                   --------->DEAR3(1)                    =================           --------->RAP2.6(2)              ------->TEIL                            <---------At4g35610           --------->LBD16                 <---------ALFIN1                      ====================          <---------LBD16              <---------ANAC58                          ------>ZmHOX2a(1)        <---------DEAR3(1)             <---------ANAC46 --------->TOE2(3)     ------>MYB46(1)        --------->DEAR3(1)             <---------ANAC58 <----------DOF2       ------>MYB83        --------->ANAC46    --------->TOE1(2) <---------ALFIN1              --------->AtMYB61 --->DOF2 <------NtERF2  --------->GLK1(2)<---------ZAT18                <---------ALFIN1<---------GLK1(1) -->HVH21------>NtERF2  <---------GLK1(2) --------->ZAT18               --------->MYB46(3)  <--------   ggccttatcgacgccggaatcacagagattccttcgatatttcgtgcacctccggctactttaacaagtccaaaaccaccttcctcctctgatttctcca  2025800                                                 <---------ANAC58                                                 <---------ANAC58                                                --------->ZAT2                                                <---------ZAT2            <------NtERF2                                               --------->ARR14(2)        ----------->RAV1(1)                                               <---------ARR14(2)       --------->ANAC58                                              <------NtERF2             --------->ANAC58                                             --------->LBD16           <---------LBD16                                            --------->ALFIN1          <---------bZIP60(2)                                            <---------ANAC46          <---------TGA1a                                           <---------LBD16            <---------O2                           --------->ANAC58<------NtERF2              --------->O2                           --------->ANAC58--------->ATERF1(1)        ===============================                         <---------ANAC46  ------>NtERF2           --------->ARR14(2)                        <------NtERF2     <---------ATERF1(1)      ----------->HVH21                        <---------SPL7   <---------DEAR3(1)    <------ZmHOX2a(2)                      <---------------AtSPL3<---------DEAR3(1)--------->ARR11(3)                      --------->ALFIN1  <---------LBD16       <---------ARR11(3)                 <---              ---------->DOF2          <---------bZIP60(2)    <---------ARR14(2)                ----- --------->ANAC46   <---------bZIP60(2)--------->ANAC46       --------->ARR14(2)               <----- <---------ALFIN1  --------->ALFIN1    --------->O2 <------MYB83------>ZmHOX2a(2)--------->CCA1(2) =================HOX2a_HOX2a          <---------O2 <---------ANAC46 --------->ATERF1(1)       <----- =================HOX2a_HOX2a       <------ZmHOX2a(2)       ----------->ARR10<------NtERF2  <-------- ---GT1    ------>ZmHOX2a(2)       <-----------HVH21<------MYB46(1)<---------ARR14(2)   <---------ARR14(2)   tccccacaatcgatctcaaaggaggtggcacggactcgatcacgcggcggagcttggtggagaagatcggagacgcggcagagaaatggggatttttcca  2025900  Previous    Next  AGI:  At1g06610.1    Description:  pre-tRNA. tRNA-Ala (anticodon: AGC) Range:  from: 2025355    to: 2025427    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g06620.1    Description:  2-oxoglutarate-dependent dioxygenase, putative. Identical to 1-aminocyclopropane-1-carboxylate oxidase homolog 1 [Arabidopsis Thaliana] (GB:Q84MB3;GB:Q9SHK4); similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT3G61400.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66433.1); contains InterPro domain 2OG-Fe(II) oxygenase (InterPro:IPR005123) Range:  from: 2025600    to: 2027270    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version