Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     <-------TEIL                                                <---------At4g35610             --------->YAB1   <---------ANAC55(2)                          --------->At4g35610          --------->WOX13(1)   ----------->GT1                         <------ZmHOX2a(2)    <---------At4g35610 ------ZmHOX2a(2)               ---------->DOF2 --------->ZAT2  --------->ZAT2 --------->ICU4 ------->ARR11(3) <---------ARR11(3)      <---------ARR11(3)    <---------ZAT2 <---------ATHB12 --------ARR11(3) --------->ARR11(3)      --------->ARR11(3)    --------->At4g35610           -------   agatcatgtgaaattcccaacatctccaaatgccgaaagagagagatcacagcttcatacttattcagcttagcaatggcaatcagtaatctactgaaat  2015700                                         ---------->DOF2                                ----------->HVH21      --------->TOE1(3)                               <-----------HVH21       --------->TOE2(3)                              ======================bZIP_DOF --------->TOE2(3)  --------->O2                              --------->bZIP60(2)     ----------->GT1         <---------ALFIN1                              --------->O2        <-------TEIL               <---------ZAT18 -->GLK1(1)--------->ALFIN1   --------->TGA1a     --------->ZAT18            --------->ZAT18   caacaatggaagggaggggatgagactcagccatgtcacagaacaaagtaagtgcatcgttaaacttaatagagtgaagcccacttctcaatctctctcg  2015800           --------------->AGL15           --------->HSFB2a(2)           <---------HSFB2a(2)          ----------------->AGL3          ----------------->AGL2         ------>MYB46(1)                                                 --------->LBD16         -------->P    --------->HSFB2a(2)         ----------->GT1      <---------HSFB2a(2)         ------>MYB83 <---------LBD16--------->ANAC55(2)                --------->HSFB2a(2)         --------->MYB52(1)          <---------ANAC55(2)               <---------LBD16        ------>ZmHOX2a(1)  --------->GLK1(1)     <---------ZAT14  <----------DOF2  <---------ICU4---------->DOF2      <---------ANAC58            <---------DAG2            <---------GLK1(1) <---------ATHB12--------->DAG2      <---------ANAC58         <-----------GT1--------->At4g35610   gtaatcactcctaccagaaaaagctcgggaattgcaaatgcgtaatgagagagcagttacaagattacctttctccagaagatgccgatgaagaaacccc  2015900              --------->YAB1             <---------ATHB12               <---------ARR11(3)         --------->WRKY38(1)           --------->WOX13(1)               --------->ARR11(3)         --------->WRKY12        --------->ANAC58                    <---------GLK1(2)      <-------TEIL       ------>ZmHOX2a(1)        --------->ANAC46                  ----------->ARR10      <---------GLK1(2)    --------->LBD16        --------->ANAC58                --------->LBD16          --------->ARR14(2)   <---------HSFB2a(2)      ---------->DOF2               --------->ARR14(2)           <---------ARR14(2)   --------->HSFB2a(2)      <---------DOF5.7(2)     ------>ZmHOX2a(2)            --------->ATHB12           ===============    <---------MYB52(1)      <---------ARR11(3)          <---------At4g35610           ===============    --------->DOF5.7(2)     --------->ARR11(3)        <---------HSFB2a(2)            <---------LBD16   <-------GAMYB    --------->YAB1  <---------ARR14(2)--------->HSFB2a(2)   --------->GLK1(2)      --   ttcgccgttaacgcaatcacaatcacaatcgatcttcgcatccgaagatttttgtttcagaagattggattcgttgacaatctaattcctggaagaaccc  2016000                   ------>NtERF2                  --------->DEAR3(1)                 <------NtERF2               <---------DEAR3(1)        ------>ZmHOX2a(2)       --------->CCA1(2)       <------ZmHOX2a(2)      <---------ARR14(2)      --------->GLK1(2)      <---------AGP1      --------->ARR14(3)            --------->ZAT2      <---------ARR14(3)       --------->LBD16      --------->ARR11(3)       ------>NtERF2      --------->ARR14(2)      <---------DEAR3(1)      <---------ARR11(3)     <---------LBD16                    <---------ALFIN1    ----------->ARR10     <---------ZAT14             <---------At5g28300             <---------MYB52(1) ==============HOX2a_HOX2a--------->ZAT14            *TSS<---------SPL7             <---------MYB46(3) =============HOX2a_HOX2a --------->ZAT18 --------->ALFIN1     <---------REM1(2)  --------->At4g35610 -------->DOF2--------->ATERF1(1)   <---------ZAT2   <-----------GT1              <---------At4g35610   tgaaagaagatctgaagtcgccgagtagtgctccggcgagcagggaggggtctgtttaccgtcccaacacggttttggggtttgagctgttgtttcattc  2016100                                        --------->ICU4                                     <---------YAB1                                  <---------WOX13(1)             <---------MYB52(1)                                 <---------ANAC58               <-------GAMYB                                 <------------CBF        <----------DOF2                                 <---------ANAC58      <---------YAB1                            ----                                --------->ATHB12      <---------ARR11(3)                      -------                             --------->TOE2(3)        --------->ARR11(3)  ------->MYC3      ---------                             <---------ANAC58        --------->YAB1       <-------MYC3      <--------                             <---------ANAC58       --------->ICU4     <-----------GT1      <--------      ------>NtERF2      <---------GLK1(1)     ----------->GT1 <---------MYB46(3)       <xxxxxxxxxxxx     --------->DEAR3(1)  --------->GLK1(1)     <---------ZAT6  <-----------RAV1(1)     <----------DOF2   caaaacgacgacgtttttggcaaatgggtttccttgattgtcattagtagagtaattatctttgtctgttgtttcacatgctcaattgtctttatcgtga  2016200                                                                    --------->YAB1                                                                    <-----------GT1                                  --------->ANAC46         --------->ATHB12                                  --------->ANAC58         <---------ICU4                                  --------->ANAC55(2)     <---------YAB1 ----->ZAT6                       <---------ANAC55(2)     --------->ICU4 ---->HVH21         <---------ANAC58                    <---------ICU4 >YAB1              <---------ANAC58 --------->MYB52(1) --------->YAB1                              - -ANAC58       <-----------RAV1(1)--------->ANAC55(1)  <---------ATHB12                 ---------->DOF2 -ANAC58      <---------TOE2(3)   --------->ANAC58   --------->WOX13(1)             ---------->DOF2 < xxxxxxxxxxxxsmallRNA(si3)       --------------->AGL15 --------->ICU4   --------->GLK1(2)        <---   cactaaacgacttgataatgttgctcgatcgataacaagtaatggaaactaatatcaatcatgattgtattcacaatcttgtttcacaaagaaagagacg  2016300                                  --------->YAB1                                --------->ARR11(3)                                <---------ARR11(3)        --------->REM1(1) ---------->GT1                --------->YAB1           ------>ZmHOX2a(1) ---------ANAC55(2) --------->ARR11(3)         ------>ZmHOX2a(1)            ----------->GT1     <---- ------MYB52(1)     <---------ARR11(3)        --------->TOE2(3)   <---------ZAT6   --------->ANAC46   ttatgtaaaatgtcaattgcgaaatcttcacaattatcttgatgacttcctcagtctcctacattttagagttatacaaggttacaagttacacaatctc  2016400          --------->ZAT6     <-------TEIL                                                                               <----    --------->CCA1(2)                                                                       ---------    --------->ARR14(1)                                                                   <-------TEIL    --------->GLK1(2)                          <----------DOF2                       <---------------AtSPL8   --------->ARR11(1)                 --------->ATHB12                               <---------TOE2(3)   <---------GLK1(2)                  --------->YAB1                                 --------->DAG2   --------->ARR14(2)                 <---------ICU4         <----------DOF2         <---------TOE1(3)   <---------ARR14(2)                <---------YAB1       --------->ANAC58      <---------AHL20(2) ----------->ARR10                   --------->ICU4       --------->ANAC58     <---------AHL20(2) -----ETT(2)    <<<<<<<ZML2     <------ZmHOX2a(1)     <-----------GT1          --------->AHL20(2)   gacaagattcggacactagaacgagtcttggtaaggaccatgattacaactttaagttacaagctttgcacaataagcttattaaataaggttcacaaca  2016500                                                                      <---------GLK1(2)                                                                     <---------At4g35610                                                                     --------->ZAT2                                                                     <---------ZAT2                                                                     --------->HSFB2a(1)                                                                     <---------HSFC1(2)                                                                     --------->HSFC1(2)                                                                     --------->At4g35610   <---------                                                                    ------->TEIL           <---------RAP2.6(3)  --------->ANAC58  <---------ARR11(3)      --------->YAB1       --------->ANAC58          <---------SPL7  --------->ANAC58  --------->ARR11(3)     <---------YAB1        --------->ANAC46         --------->DEAR3(1) -----ARR11(3)   <---------ALFIN1--------->HSFB2a(2)             --------->ANAC58         --------->RAP2.6(2) >ANAC46   --------------->AtSPL8<---------HSFB2a(2)        ---------->DOF2          ---------->DOF2   tctcatgccatgttttgttccacatcttgagggttctcgagagctatgatatgtttcttaaacaaagacgcagcttcttccctctcatcaagccgtccca  2016600  Previous    Next  AGI:  At1g06580.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G64580.1); similar to hypothetical protein [Brassica rapa] (GB:ABQ50546.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 2014002    to: 2016053    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g06590.1    Description:  binding. similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA99493.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO69986.1); similar to hypothetical protein OsI_037933 [Oryza sativa (indica cultivar-group)] (GB:EAY83974.1); contains domain PTHR12830:SF5 (PTHR12830:SF5); contains domain PTHR12830 (PTHR12830) Range:  from: 2016307    to: 2024661    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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