Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   ----------->HVH21                                                                                --------->LBD16                                     ----------->HVH21                         <---------ANAC46 -------->ZAT2                 --------->MYB46(3)                              <---------ANAC58 ---------At4g35610          --------->MYB52(1)                                <---------ANAC58 ---------ZAT2            --------->ANAC58                           --------->ANAC58 -------->At4g35610       --------->YAB1                             --------->ANAC58      --------->TOE1(2) ------>DOF2              --------->ANAC58                           <----------ID1  ------>ZmHOX2a(2)   aaagctgactctgcgtcttctacttcaatcgcaacggctctaacaccgagaccatgtgaagagaagaaggaacgacaagagccgtgatcgaaacttggga  2013100                                                                                          <------MYB46(1)                                                                                         --------->MYB111(1)                                                                                         --------->MYB59                                                                                         --------->MYB46(2)                                                                                 <---------DEAR3(1)              <---------DEAR3(2)      --------->CCA1(2)                        --------->LBD16          <---------MYB46(3)    <------NtERF2                                <---------LBD16        <-------GAMYB         <---------DEAR3(1)                             <---------At4g35610       <---------MYB46(3)     <---------ANAC46                               --------->At4g35610      --------->ALFIN1       <---------LBD16                                --------->MYB52(1)      <---------AtMYB61     ------>NtERF2                                  <---------WRKY12        <-  --------->ZAT2            --------->LBD16                 ---------->DOF2<---------WRKY38(1)     <-  --------->At4g35610      <---------DEAR3(1)          ----------->GT1    ----------->HVH21        <- --------->GLK1(2)        <---------LBD16          <------ZmHOX2a(1)     <-----------HVH21<------MYB83   tagaagctgtggttgtcggtttaatctctccggcggagagagacggagagtaaggagcagtgaaaaggaatcggaggtcaccggaggtgagtaggtaaga  2013200                                                                                              <------                                                                                             ------>NtERF2                                                                                             --------                                                                                           --------->ATERF1(1)                                                                                           <------NtERF2                                                                                          <---------ATERF1(1)                                                                                          ------>NtERF2                                                                                          <---------RAP2.3(1)                                                                                        --------->ATERF1(1)                                                                                       <-----------HVH21                                                                                      <---------ANAC58                                                                                      <---------ANAC58                                                                                  <---------ANAC58                                                                                  <-------GAMYB------                                                                                  <---------ANAC58                                                                                 <---------DEAR3(2)                                                                                 --------->MYB55(2)                                         <-----------ARR10                       <------MYB46(1)                                        <---------GLK1(2)                        --------->MYB52(2)                                      ----------->ARR10                          <---------MYB46(3)                                     <------NtERF2                              <---------TOE2(2)                                    --------->LBD16                             <---------AtMYB61                                   <---------ANAC46                            <---------MYB52(1)                             --------->ARR14(2)                              <---------TGA1a---------                          ------>ZmHOX2a(2)                                  <---------ANAC46<-------                         <------ZmHOX2a(2)                                   <---------O2<---------DEAR3(1)                        --------->ARR14(2)                         <----------ID1<------MYB83<------NtERF2                        <---------ARR14(2)                   <------ZmHOX2a(1)--------------------->WRI1             <---------LBD16 <---------ARR14(2)            --------->LBD16   --------->O2--------->DEAR3(1) ----------->HVH21      <---------ARR11(3)                <---------LBD16    =============MYC_MYB --------ANAC58         --------->ARR11(3)           <---------ALFIN1     ----------->HVH21--------->RAP2.3(1) --------ANAC58       <---------HSFB2a(1)--------->GLK1(2)<-----------RAV1(2)--------->TGA1a--------- --------ANAC46--------->LBD16    <---------LBD16 --------->LBD16  ----------->HVH21  <---------ANAC46   ggcgtgaaccatgtttccggtggaaagatcggatttggcggagaatctcatccccagaccccaggagaagcgacgagcgacgttggttgcgtcgccgcac  2013300                                                                                                  ---                                                                                                -----                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                              -------                                                                                              <------NtERF2                                                                                             ------>NtERF2                                                                                             <-------                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                           <------NtERF2                                                                      --------->ARR14(2)   --------->RAP2.3(1) ---ALFIN1                                                           <---------GLK1(1)    --------->LBD16 ->ABI4(1)                                                   ------->TEIL--------->TOE1(2)<---------ATERF1(1) ----->RAV1(1)                   <---------AHL20(2)   <---------ANAC58--------->GLK1(2)   ------>NtERF2 >RAP2.6(2)               --------->TOE1(3)           <---------ANAC58<---------ARR14(2) --------->LBD16 --SPL7  ----------->HVH21--------->TOE2(3)    <---------GLK1(2)     <---------HSFB2a(1) <---------LBD16 >DEAR3(1)           <----------DOF2 --------->YAB1<----------DOF2   --------->GLK1(1)  <---------LBD16   cagaactcgatgtgatggaagcgcttaaccttgaatttatcagactttggattctttcttacgaacttggaaaatccgacgagcttgaatcccggcgacg  2013400        <------NtERF2       <-----------TGA1       <---------RAP2.6(3)      --------->bZIP60(2)      --------->bZIP60(1)      --------->RRTF1(2)      --------->RAP2.3(2)      --------->RAP2.3(3)      <---------bZIP60(1)      --------->DEAR3(1)      --------->RRTF1(3)     --------->RAP2.3(1)     --------->RRTF1(1)     --------->ERF1     <------NtERF2     --------->ORA47(2)    <---------ZAT18    <---------ATERF1(1)    ------>NtERF2   --------->DEAR3(1)                       <---------AtMYB61  <---------ABI4(2)                     <----------DOF2  <---------At4g35610                 <------NtERF2  <------NtERF2                      <---------RRTF1(1)  --------->At4g35610                <---------RAP2.3(1) <---------ATERF1(1)                 ------>NtERF2 ------>ANAC46                       <---------ORA47(2) ->NtERF2                            <---------DEAR4(2)                                             < --->DEAR3(1)                        <---------ERF1                                            <----- --->O2<-----------HVH21             <---------ATERF1(1)                                       ------ ----O2------>NtERF2                --------->DEAR3(1)                 --------->At4g35610  --------- ----->HVH21                        <---------DEAR3(1)                 <---------At4g35610  --------- ----DEAR3(1)         <---------GLK1(2)<---------ANAC46           -------->P                <-------- -->ATERF1(1)       <---------YAB1  <---------RAP2.3(3)           ------>MYB46(1)           --------- --ATERF1(1)--------->YAB1          <---------RAP2.3(2)           ------>MYB83              --------- -->HVH21   <---------ICU4          <---------RRTF1(3)       <-----------GT1               <---------LBD16 -DEAR3(1) --------->ICU4          <---------ABI4(1)    --------->ATHB12                --------->At4g35610 >DEAR3(1) <---------YAB1   ----------->HVH21    <------NtERF2  --------->MYB46(3)      <---------At4g35610   acgcagcgccgtcatcatggttttgattctctgaaacggcggcgttttggtggcccattgatttcaccaactctgctaaaactaaaactctgctacggaa  2013500                                                                                                    <                                                                                                   --                                                        <---------AHL20(1)                         <-                                                        <---------AHL20(2)                         <-       <---------ANAC58                              <---------AHL20(2)                            <-       <---------ANAC58                            <---------YAB1         --------->AHL20(1)       <-       <---------ANAC46   <---------TOE1(3)     --------->AHL20(2)        --------->AHL20(2)       -- ---------ANAC46          <---------TOE2(3)  --------->ARR14(2)         <---------AHL20(1)         -- ----ARR14(2)            <---------DOF5.7(2) <---------ARR14(2)         --------->AHL20(1)       ---- --->ARR14(2)            --------->MYB52(1) *TSS<---------AHL20(2)      <---------AHL20(2)     ------ >ANAC55(2)            <---------MYB52(2) --------->ANAC46           --------->AHL20(2)   ----------- >ANAC58     <---------At4g35610          --------->ANAC55(2)        <---------AHL20(2) ============= -ANAC55(2)  --------->At4g35610       <---------ARR14(2)           --------->AHL20(2)  ---------->DOF2 >ANAC58 <---------MYB52(1)            --------->ARR14(2)    <---------AHL20(2)  <---------TOE2(3)--- >ANAC46<-------GAMYB --------->At4g35610<---------LBD16--------->AHL20(2)<---------AHL20(1)   ======   ctgtgtgtttcgttgagctgtagaagctaacgatagacacatatacggattttattattttattttaaaattaaaatattttagaggttagaaagaaaaa  2013600      --------->TGA1a      =============================================MYC_MYB      <---------ANAC58      <---------TGA1a      <---------ANAC46                                             <-------MYC2      <---------O2                                                 ------->MYC2      --------->O2                                                 ------->MYC4   ------>ZmHOX2a(1)                                               <-------MYC3 ------>ZmHOX2a(2)                                                 <-------MYC4 ------ZmHOX2a(2)                                                  ------->MYC3 ------->ARR11(3)                          <-------GAMYB          --------->TGA1a --------ARR11(3)                          =================================MYC_MYB --------GLK1(2)               --------->MYB46(3)            --------->ZAT14 --------ARR14(2)             <---------At4g35610            <---------ZAT14 --------ARR14(3)            ----------->RAV1(1)             <---------ZAT18 ------->ARR14(2)           <---------WRKY38(1)              --------->ZAT18   <---------ARR14(2) ------->ARR14(3)           <---------WRKY12     <---------ZAT18  <---------TGA1a ------->ARR10             --------->WRKY18(1)   --------->ZAT18  --------->O2 --------->ARR11(3) ---->DOF2               --------->At4g35610  --------->MYB52(2)  <---------O2 <---------GLK1(2) >GT1 <---------ANAC58   <---------At4g35610<---------MYB52(1) <---------REM1(2)   <---------YAB1 ===============bZIP_DOF>>>>>>>GRF7   --------->ZAT18  --------->YAB1        ----------->ARR10------- ------>RVE1(1)      <-----------HVH21<---------ZAT14 <---------YAB1   --------->SPL7         <------ ===============bZIP_DOF--------->MYB59   <---------ZAT6    <---------ZAT6 <------ZmHOX2a(2) --------   agatcctctcgtgtgtctgagaatgtcaggtcaacagatgtggactgttagtggacatcatagtgtacacgtgtacgatcagattttgattacaaagata  2013700                                                              <-------MYC2                                                              <-------MYC3                                                              ------->MYC3                                                              ------->MYC2                                                             =========================MYC_MYB                                                             <---------TGA1a                                                             --------->ANAC55(2)                                                             <---------ANAC46                                                  --------->ANAC58             ------>ZmHOX2a(2)                    <---------ANAC55(2)           <---------ARR11(3)                     --------->ANAC55(2)           <---------ARR14(2)                  --------->ARR14(2)           --------->ARR14(2)              <-----------------AGL1           <---------AGP1                  ----------------->AGL1           ------->TEIL               <---------ANAC58       <---------O2    <---------At5g28300           --------->ARR11(3)         <---------ANAC58       <---------ANAC55(2)     ----------->HVH21          <---------WOX13(1)--------->ANAC58           -------->P    --------->LBD16             =======================================MYC_MYB   <---------ANAC55(1)          <--------P ----------------->AGL2        ------>MYB83   <---------ANAC46  <----------DOF2 ------>ZmHOX2a(2)       --------->TGA1a<-----------GT1   <---------ANAC58  ==================================================bZIP_DOF   <---------ANAC58 <------------------------ANAC81          --------->O2------>MYB46(1)   <---------ANAC55(2)         ========================================MYC_MYB   --------->ANAC55(2)     <----------DOF2 <-----------------AG        <---------MYB59 -->ARR11(3)--------->GLK1(1)  <-------GAMYB   <---------ARR14(2)    --------->ARR11(3)          <--- ---ARR11(3)<---------GLK1(1) <---------MYB46(3) <---------LBD16     <---------ARR11(3)  ----------->GT1 ->YAB1 <---------WOX13(1) ============================================bZIP_DOF  <---------MYB52(1)   atgttccgtgatggatctccctgctttctctttggttgatccttgtccagttacggaatgctcacgtgtaagacctatctaccgtttagaatagtatttt  2013800                                                  <---------TOE2(3)                                               --------->ICU4                                               <---------YAB1                                    <---                                           ------>MYB46(1)                                       <---                                           ------>MYB83                                        <-----                                      <-----------GT1                                        --------                              ----------->GT1--------->YAB1                                 <--------  <---------ALFIN1        --------->AHL20(2)<---------ATHB12          --------->ARR11(3) <---------ARR14(2)  --------->ANAC46        <---------AHL20(2)--------->MYB46(3)        <---------ARR11(3) --------->ARR14(2) --------GT1        <---------ANAC55(2)    -------->P           --------->YAB1      <---------ANAC46<   ttccccacaatatcaaactattacttaaaaaattgaaaattttccaaccattatggatagaggcaaacatgaaatctttggtaattcggtggatttgatt  2013900                 --------->AHL20(2)                                                     ----------->HVH21                 <---------AHL20(2)                                          <---------HSFB2a(2) ---MYB46(1)    --------->AHL20(2)                                           --------->HSFB2a(2) ---MYB83       <---------AHL20(2)      <----------DOF2      --------->WOX13(1) <---------ARR14(2) ----WOX13(1)   <---------AHL20(1)      <---------DAG2     --------->WRKY18(1)  --------->ARR14(2) ->ATHB12       --------->AHL20(1)   <---------ALFIN1     ----------------------->TaNAC69(2) -YAB1     <------ZmHOX2a(1)        --------->MYB46(3)--------->MYB52(1)    <---------LBD16    <----- ---------MYB46(3)        ---------->DOF2            ------>ZmHOX2a(1) <---------ALFIN1 <---------ATHB12   ggtgtttgaaacaggaaatttaatttgtaaaagactgaaccactttataagtttcctaatggtcaatcttctcacacttctggatttgcaatgacccgtt  2014000  Previous    Next  AGI:  At1g06570.1    Description:  PDS1 (PHYTOENE DESATURATION 1). Identical to 4-hydroxyphenylpyruvate dioxygenase (HPD) [Arabidopsis Thaliana] (GB:P93836;GB:O04330;GB:Q9SHK1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71143.1); similar to 4-hydroxyphenylpyruvate dioxygenase [Brassica rapa subsp. pekinensis] (GB:ABI63586.1); contains InterPro domain 4-hydroxyphenylpyruvate dioxygenase; (InterPro:IPR005956); contains InterPro domain Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360) Range:  from: 2011884    to: 2013544    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version