Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      --------->YAB1            <------ZmHOX2a(1)                                   <---------YAB1            <------MYB46(1)                                 --------->YAB1              <------MYB83                           -                                <---------ATHB12           <--------P                               -                                --------->ICU4           <------MYB46(1)                            -                           <---------At4g35610           <------MYB83                             <--                       <---------REM1(1)                --------->MYB111(1)                       ---     --------->ATHB12  --------->ALFIN1                 <---------AtMYB61                         <-- -------->ZAT14      <---------At4g35610                --------->MYB111(2)                       <-- -------TEIL         <------MYB83<---------ICU4         --------->MYB46(2)                        <-- ---------ZAT14      <------MYB46(1)<---------ICU4      --------->MYB59                  *TSS     <-- -----MYB46(3)       --------->At4g35610                <---------MYB46(3)             <---------At4g35610 ->RAV1(2)         <-----------RAV1(2)          --------->ALFIN1---------->DOF2   <----------DOF2----   ggtacagtcattgagaaaatggcaggtgaagctaatcatcatcacaaggagagggggtttggtaggaaaagactctcatcaaaccttttagcttcttcta  2007200          <-----------GT1    <----------DOF2   --------->TOE2(3)   <---------DAG2 ----->MYB46(1) -------->MYB52(1) ----->MYB83                --------->TOE2(3) -------MYB59               --------->TOE1(3)                    <---------WOX13(1) ------>AtMYB61          <-----------GT1    --------->AHL20(2)<---------YAB1 -------MYB111(2)   ----------->TBP     --------->AHL20(2) ------->TEIL -------MYB52(2)<-----------TBP  --------->TOE2(3)--------->ANAC58 -------MYB111(1)   <---------AHL20(2)----------->GT1 <---------At4g35610 -------MYB46(2)--------->AHL20(2)  ---------->DOF2   --------->At4g35610             ---------->DOF2 ----->ANAC46 <----------DOF2   --------->REM1(1) --------->ANAC58  ------->TEIL    --------->TOE2(3)   cctaaccttttttgacctttatataaaaaaccttacatcaaagtaaataaacaagcagatgaatatgatggacttattctttgcaacctaaggcccatat  2007300                                      ------->GAMYB                                    --------->ANAC58                   --------->CCA1(2)    ------->GAMYB                                    --------->ANAC58               <---------WOX13(1)     --------->ANAC58                             <---------ICU4              ---------->DOF2        --------->KAN4(2)   ---------->DOF2           --------->ATHB12          <---------YAB1--------->YAB1       --------->ANAC58   accattaaagctctgaatgtgatgggcttattcattgcaacccaaggcccatctgtcattaaagctctgaatgatatgggcttattctttgcaacccaag  2007400                                              ------->GAMYB                                         -                                            --------->ANAC58                   --------->CCA1(2)  ---                                            --------->ANAC58               <---------WOX13(1)     ---           ---------->DOF2           --------->ATHB12            ---------->DOF2           --------->ATHB12     -------->P                      <---------ICU4            <---------YAB1--------->YAB1<---------ICU4   gcccatctaccattaaagctctgaatgagatgggcttattcattgcaacccaaggcccatctactattaaagctctgaatgatatgggcttattcattgc  2007500                                              <------------CBF            --------->ANAC46     --------->CCA1(2)  --------->ANAC58                  ----------->GT1 ------>GAMYB                  --------->YAB1--------->ATHB12                        --------->DAG2 ------>ANAC58               <---------WOX13(1)     --------->ANAC58     ---------->DOF2       ------ ------>ANAC58     ---------->DOF2           <---------ICU4        -------->P      ---------->DOF2   aacccaaggcccatacaccattaaagctctgaatgatatgggcttattcattgcaacccatggcccatctaccattaaagctctaaaaaggtaaaaaccc  2007600      <---------ANAC58                                                     <---------At4g35610      <---------ANAC58                                                     --------->At4g35610  <---------HSFC1(2)                                                   --------->ARR14(2)  --------->HSFC1(2)               --------->ZAT14                     <---------ARR14(2)  <---------HSFB2a(1)<---------ARR11(3)                       --------->DAG2  --------->HSFB2a(1)--------->ARR11(3)        <---------ALFIN1      --------->HSFB2a(1) --->TOE1(2)  *TSS  --------->At4g35610     ------>ZmHOX2a(1)---------->DOF2                    <----   aagaagtttcttcccttgaagaagctctctctatctctccagtctccttccaccttgaatgagtaaagcgagggttctgctaaaaccctcttccctcacc  2007700                                                                                                  <--                                                                                           <---------                                                                             ------>ZmHOX2a(1)  <----                                                            <-----------RAV1(2)   <---------ARR14(2)                                             --------->ANAC58                ========================  <---------ANAC58                           --------->ANAC58 --------->At4g35610 --------->ARR14(2)  <---------ANAC58                       <-----------HVH21 <---------At4g35610    <---------GLK1(2) -----ALFIN1                  ------>ZmHOX2a(1)          --------->YAB1  <---------PCF2    <-------GAMYB   acttgcttaaccagagccaaggccttcttctcctctgtttctcagtcacgctctatctctcatcagatggagatgggtccttccgattcggagcgttact  2007800         --------->ARR14(2)         <---------ARR14(2)        <---------MYB52(1)     ===========================HOX2a_HOX2a                                                       <--     ------>ZmHOX2a(2)                                                                            <--     <---------LBD16 <---------GLK1(1)                                                          -----    --------->ARR14(1)                                                    --------->ANAC58   -------- <---------YAB1      <---------ARR14(2)                                   --------->ANAC58   <------- -------MYB52(1)     --------->ARR14(2)        ---------->DOF2          <---------ANAC58     -------- -DOF2 --------->LBD16                    --------->ZAT14           <----------DOF2          -------- -----ZAT6--------->SPL7           --------->ZAT6               <------ZmHOX2a(2)           --------- ===========HOX2a_HOX2a  ------>ZmHOX2a(1)<---------ZAT14 ------->TEIL  <---------ANAC58    <--------   gttatgatccggtactgcgatggaatcctgaagttgaagactacttcactaaagcttatggacccgatcactttgctcgcatttcaaaggctctcacgta  2007900      --------->YAB1     <---------ATHB12     <---------YAB1                                                    --------->TOE2(3) -------DAG2                                                           <----------DOF2 --------DOF2                                                          <---------DAG2 -->TEIL                                                     --------->ARR14(1) ->ANAC55(2)                                           <---------At4g35610 --ANAC55(2)                                           --------->At4g35610 ->ANAC58                         <---------ZAT18 <----------DOF2 <----------DOF2 ->ANAC58                   ----------->RAV1(1) <-------TEIL<---------GLK1(2) <---------ANAC58 ------>AtSPL3           --------->ANAC58 <---------MYB52(1)--------->ARR14(2)<---------ANAC46 -TOE1(2)                --------->ANAC58<----------DOF2    <---------ARR14(2)<---------ANAC58     --   cttttctatcattctcatctacttctgaagcaacattgccctcctttaggcgcatttagctggattcgctttgccttattgcttattcattctctaatct  2008000                <---------AHL20(2)               --------->AHL20(2)            --------->AHL20(2)           <---------YAB1         <---------ICU4         --------->YAB1                        ------>ZmHOX2a(1)         -------->ATHB1                        <-----------HVH21         --------->ATHB51               <---------GLK1(2)         <--------HAHB4         --------------------->WRI1        --------->ICU4       >>>>>>>>>>>>>>>>>LFY             <---------REM1(1)        <-----------GT1 ---->ZmHOX2a(1)--------->AHL20(2)     <---------At4g35610  <-------GAMYB  --------->YAB1<-----------   cctaaatcgaattattatttaattgcattttccccaatgttagcttctccttcacatgtttcagttgtagtctgccatcgtaactaaattaacaaacttt  2008100  Previous    Next  AGI:  At1g06550.1    Description:  enoyl-CoA hydratase/isomerase family protein. similar to CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1), 3-hydroxyisobutyryl-CoA hydrolase [Arabidopsis thaliana] (TAIR:AT5G65940.1); similar to unknown [Populus trichocarpa] (GB:ABK93660.1); contains InterPro domain Crotonase, core; (InterPro:IPR001753) Range:  from: 2003626    to: 2007189    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g06560.1    Description:  NOL1/NOP2/sun family protein. similar to nucleolar protein, putative [Arabidopsis thaliana] (TAIR:AT4G26600.1); similar to Os08g0365900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061645.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69989.1); contains InterPro domain rRNA subunit methyltransferase (InterPro:IPR006174); contains InterPro domain PUA; (InterPro:IPR002478); contains InterPro domain PUA-like (InterPro:IPR015947); contains InterPro domain Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678) Range:  from: 2007614    to: 2012005    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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