Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       <---------At4g35610                                                                               --------->ANAC58                                                                               --------->ANAC58                                               ----------->RAV1(1)           --------->MYB52(1)  <---                        <---------ANAC58      --------->ANAC46      <------NtERF2    --------->ZAT2                        <---------ANAC58--------->GLK1(1)         <---------ANAC46   --------->At4g35610                  <---------YAB1        <---------GLK1(1)         <---------ANAC58   <---------ZAT2             --------->At4g35610  <------ZmHOX2a(2)               <---------ANAC58----------->RAV1(2) ----MYB83 <-----------RAV1(2)   <---------ARR11(3) --------->ARR14(2)     --------->AtMYB61    ----- ----MYB46(1)<---------At4g35610 --------->ARR11(3) <---------ARR14(2)--------->HSFB2a(2)    <------ZmHOX2a(1)   tggtcttcaagtagcagatgatgatgccttgagaagatcaagaattccacaacagttcttccaccatggcgtctcgacctcacgacctgctgctaggagt  2003000                                                <---------------AGL15                                                --------------->AGL15                                               <-----------------AGL3       <---------AHL20(2)                      ----------------->AGL3       <---------AHL20(1)                      <-----------------AGL2       --------->AHL20(1)                      <-----------------AGL1      --------->YAB1                        ------>ZmHOX2a(1)      --------->AHL20(2)               ---------->ID1                    --------->GLK1(2) <------NtERF2                         ---------->ARF1           --------->ARR11(3)          <------- ------MYB46(3)                    <---------ANAC58              <---------ARR11(3)      <---------AtMYB61 ---->ALFIN1                       <---------ANAC58 <---------ICU4--------->CCA1(2)   <----------DOF2   ggctgcaattatattgaataagagtattagactcttgtcttgtctcctaactaattttggcacaagagatataagaatatgaagttttcttttggtgttt  2003100                                                     --------->At4g35610                                                     <---------At4g35610                                  <---------At5g28300<---------ZAT2                                 --------->MYB52(1)  --------->ZAT2       --------->DAG2                            <--------P             <---------RAP2.6(2)   --------->ZAT14                        <---------ANAC55(2)     <---------RAP2.6(2)      <---------ZAT14                        <---------ANAC46     --------->ALFIN1            ---------->DOF2     --------                     <---------ARR14(2)     <-------GAMYB            --------->ZAT6          <-------                     --------->ARR14(2)    <---------MYB46(3) --------->At4g35610            <-------                     --------->ARR11(1)   <---------ANAC58  <---------WRKY12                <--------                   <---------MYB46(3)     <---------ANAC58  <---------WRKY38(1)       --------->ZAT2                 <---------At4g35610      <---------RAP2.6(2) <------NtERF2           <---------At4g35610             <-----------HVH21--------->ANAC58<---------MYB46(3)   -------->P         --------->At4g35610        <---------YAB1--------->CCA1(2)  <---------LBD16  <-----------HVH21       <-----------GT1 --MYB46(3)<---------WOX13(1) --------->ANAC58--------->ALFIN1<---------At4g35610----------->HVH21 <-   ggattggaacctgattgtcagtggatacgggtaagtcacggtttgcggttgtggctgctgagtcagcgctaccagtaaagtgtgtaacagctcccatgat  2003200                                     ----------->RAV1(1)                            ------->GAMYB                                    ----------->HVH21                             --------->At4g35610                                  --------->AtLEC2                            <-----------HVH21------                                 --------->LBD16                        <---------ALFIN1       ------ ->ICU4                         <---------ANAC46                       --------->ANAC58        <----- --YAB1                         <---------ANAC58                       --------->ANAC58        ------ --ATHB12                    ------------------>SPL14                --------->bZIP60(1)    --------- -TOE1(2)      <----------DOF2  <---------ANAC58   xxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------At4g35610 --------HSFB2a(2)       ------>ZmHOX2a(1)       ---------->ID1      --------->ANAC46     --------->TOE2(3)   tttggaagagacttcatctttcttctcctctaatccgtgcaacagggttttggctccatctatgcctcttgacaccacattgtcaactgcatccttgacg  2003300                     --------->At4g35610                  --------->ZAT2                  <---------ZAT2             <---------ARR14(2)            <-------GAMYB          <---------DEAR3(1)                                      <----------DOF2          <---------RAP2.6(2)                                    <---------DAG2 --->ETT(2)<---------MYB46(3)                                --------->ALFIN1 --->bZIP60(1)    --------->At4g35610         --------->REM1(1)<------NtERF2                  <------ ----bZIP60(1)    <---------At4g35610  <-----------GT1     <---------O2          --------->ATERF1(1) --->ANAC46<---------DEAR3(2)     <---------MYB52(1)      <---------AtMYB61--------->DAG2 <---------AHL20(2) -->HVH21 <---------ANAC46   --------->MYB52(1)       --------->At4g35610---------->DOF2  --------->AHL20(2)   acattggtcttggcggtttcagcagaggccataacagtttgtttcgcttcaccaagagcagaggtggccttttgcaaaagggagtctgccatttttttac  2003400                <---------AHL20(2)          <---------ANAC58                                     <-----------TBP          <---------ANAC46                                     --------->CCA1(2)                 ----       <---------MYB52(1)                        ---------->DOF2                               ------      <-------GAMYB                      <---------YAB1       --------->ARR11(3)         --------->CCA1(2)     <-----------RAV1(1)               --------->YAB1         <---------ARR11(3)<------------CBF----- -----GT1 <---------ANAC58            --------->ICU4     <------ZmHOX2a(1) ----------->GT1 ----------   tccgtctctgttgcttgttttattcgacaagacgctggaaattataagaaaaaaagagaggagagatatatagtgagaagaaaattgagagataaaaggg  2003500                             <---------MYB46(3)                          ------>NtERF2                         <---------DEAR3(1)                         <------NtERF2                        <---------LBD16                        --------->LBD16                        --------->ATERF1(1)                        <------NtERF2                        --------->At4g35610                        <---------At4g35610                        ------>NtERF2                       <---------RAP2.3(1)        <---------At4g35610<---------At4g35610   <---------AHL20(2)  <---------ATERF1(1)                                                   --------  --------->AHL20(2)  <---------DEAR3(1)      --------->ANAC55(2)                          <--------P  <-----------TBP     <---------RAP2.6(2)     --------->ANAC46                             <---------MYB52(1) ----->At5g28300      <---------RAP2.3(2)--------->AtMYB61                 --------->YAB1 <-------GAMYB ----->GT1       <------------CBF     ------->GAMYB               --------->TOE1(3)      <---------MYB46(3) ------>GT1 <-----------------AGL1   --------->MYB46(3)           --------->TOE2(3)      --------->MYB55(2) >DOF2  --------->At4g35610<------NtERF2 <---------MYB59<----------DOF2--------->ZAT6  <---------MYB52(1)   gtaaatttatagctgtccaaattggccgcggctgtttcaacgacctaaacgtgacttcctttgtctaaccttaacactaatattaaactggtggttagtt  2003600                                                 <------------CBF                                                --------->ATHB12                                                --------->ATHB51                                                -------->ATHB1                                             --------------->AGL15                  --------->ATHB12           <---------------AGL15            ------>NtERF2         <---------ANAC46                   <-----------------AGL1           <---------ANAC58      --------->ALFIN1                 <------------CBF                      <---------ANAC58    <---------ANAC58                 <---------YAB1 ----------->GT1          <---------ETT(2)    <---------ANAC46            <---------ICU4 <---------YAB1      <---------AHL20(2)               -    <---------ANAC58         --------->YAB1 <-----------------AGL3 --------->AHL20(2)            <--- ->MYB52(2)<------ZmHOX2a(1)<---------YAB1  <-----------------AGL2 --------->YAB1  <---------TOE2(2)-   ttgtttgtgtggaggagacatcatttgaaaatgataactactattgactattattggtaaaaactctaattatatcatggcgacccatgttttacatata  2003700                                                                  --------->ALFIN1                                                                 <-------MYC2                                                                 ------->MYC3                                                                 ------->MYC2                                                                 ------->PIF5                                                                 <-------MYC4                                                                 ------->MYC4                                                                 <-------MYC3          <---------ICU4                                         <-------PIF5                   <----          --------->YAB1                                        --------->O2                   <-----         <---------ATHB12                                       <---------TGA1a                ------      <---------AHL20(2)                                        <---------O2             ----------->GT1      --------->AHL20(2)                <---------ALFIN1        --------->TGA1a         --------->DAG2     --------->AHL20(2)               ----------->RAV1(1)       ==================================bZIP_DOF -------->TOE2(3)                  --------->ANAC58          ------->GAMYB             ---------->DOF2 --------GT1                       --------->ANAC58          =============MYC_MYB   <------ZmHOX2a(1) -------->TOE1(3)                  --------->ANAC46         <---------ALFIN1      <---------TOE2(3)   aaccttatttaatcatcgctgcatgagtttgagtctcaagcaacacattatgtagcaatacaacacacgtggagtttcagtttttaggataaagtattaa  2003800                                                                             <---------O2                                                                             <---------ZAT2                                                                             <---------TGA1a                                                   <---------ANAC46          --------->TGA1a                                                   ----------->RAV1(2)       --------->O2                                              <---------ANAC55(2)            --------->ZAT2                                              --------->ANAC55(2)           ------>NtERF2                                              <---------ANAC46             <---------ALFIN1                                              <---------ANAC58         ------>NtERF2                                              <---------ANAC58       <---------ANAC58                                             <-------TEIL            <---------ANAC58                                          --------->At4g35610   <---------ARR14(2)                                    --------->TOE2(1)           --------->ARR14(2)          <---------ARR14(2)        --------->TOE1(1)        <---------ANAC46----------->RAV1(2)<---- -----YAB1--------->ARR14(2)       ------>ZmHOX2a(1)         --------->ANAC55(2)            <-------- ----AHL20(2)                  --------->ARR14(2)<---------ARR14(2)<-----------GT1     <<<<<<<<<<<<<< --->AHL20(2)             <---------ZAT14 <---------At4g35610<---------ANAC55(2)       >>>>>>>>>>>>>>   aattggaacacatatatggtctagagtctatactatcctcgtacagatgcgtagcctgaagtctcgtatttgcctccccacctgtgaatttccaatggta  2003900  Previous    Next  AGI:  At1g06540.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G30930.1) Range:  from: 2002876    to: 2003392    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g06550.1    Description:  enoyl-CoA hydratase/isomerase family protein. similar to CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1), 3-hydroxyisobutyryl-CoA hydrolase [Arabidopsis thaliana] (TAIR:AT5G65940.1); similar to unknown [Populus trichocarpa] (GB:ABK93660.1); contains InterPro domain Crotonase, core; (InterPro:IPR001753) Range:  from: 2003626    to: 2007189    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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