Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 <-----------HVH21              <---------ZAT6          --------->ICU4          <---------YAB1        --------->YAB1        <--------HAHB4       <---------YAB1       <---------AHL20(2)     --------------->AGL15     <---------------AGL15    ----------------->AGL3          --------->YAB1              --------->YAB1    <-----------------AGL3          <-----------GT1   <---------ZAT6                             ----    <-----------------AGL2    --------->YAB1   <---------ARR11(3)                 <---------WOX13(1) --------->GLK1(1)---------->DOF2--------->YAB1--------->ARR11(3)           --------->ZAT6     <-----   gcgatttctataattagtgtcaaagcatctaataacaataaccattcaagttcttagtgtttaaaatcaaaagtttaaacactaattgatactcatttta  1965400                                                   <---------AHL20(2)                                             <---------AHL20(2)                                             --------->YAB1          ----------->GT1                                             --------->AHL20(2)     --------->ANAC58            -----                                          <---------ICU4            ----------->GT1       <------MYB83                                          --------->YAB1<---------AHL20(2)                <---------MYB46(3)                                         <---------AHL20(2)<---------DAG2                 <------MYB46(1)             --------------->AGL15       --------->AHL20(2)<----------DOF2--------->DAG2  ----------- ----->ANAC55(2)                 --------->ICU4  --------->ANAC55(2)--------->ANAC58   <---------ARR14(2) ------GT1   <---------------AGL15 <---------ARR11(3)   <-----------GT1  ---------->DOF2<---------WOX13(1)   catattaatctaatacttgtattggaagttttgccattatctattaattatatgtaatttactttttgggacggaaaaaggaaattgtggattggttaaa  1965500                                                                                                   <-                                                                                                   --                                                                                     <---------ARR11(3)                                                              --------->MYB52(1)     --------->ARR11(3)                            ----------->GT1                  ------>ZmHOX2a(1)     ----------->GT1 --  ----------->GT1          --------->DAG2             ------>ZmHOX2a(1)    ---------->DOF2         <- ----->DOF2----------->RAV1(1)  ---------->DOF2      <---------MYB59   --------->AHL20(2)         <-- >GT1 ---------->DOF2     ---------->DOF2      <---------GLK1(2)       <---------AHL20(2)         ---   aagagagtaaaagcaccatatagtagcaaaaagtaaaagataactacaagaatttcctaactcctaacgaaaattaaaaaagaagaagataatttctaaa  1965600               <---------AHL20(2)               --------->AHL20(1)     --------->YAB1                             --------->ATHB12               --------->AHL20(2)  --------->YAB1                               --------->AHL20(1)              --------->AHL20(2)  <---------YAB1                      --------->LBD16              <---------AHL20(2) --------->AHL20(2)                  --------->DEAR3(1)   --------->AHL20(2)           --------->YAB1             --------->ICU4       <---------AHL20(2) --------AHL20(2)           <---------AHL20(2)             <---------YAB1       --------->AHL20(2) ------->AHL20(1)           --------->AHL20(2)          <---------MYB52(1)     --------->AHL20(2) ------->AHL20(2)          <---------AHL20(2)          <-----------TGA1----------->GT1 --------AHL20(1)          --------->AHL20(2)          <---------RAP2.6(3)  <---------YAB1 -------AHL20(2)           --------->AHL20(1)          <-----------HVH21   --------->AHL20(2)-------- ------>AHL20(2)           <---------AHL20(1)      <-----------GT1<---------ALFIN1           --------   ttaaatttaacagaaattaaattaacaaataaaattataatcagagagaatataaaccgtcatgatcaacaccgcgttaaaattaattggagagcaagct  1965700                                       <---------HSFB2a(2)                                   --------->GLK1(2)                 --------->AHL20(2)                            ----------->GT1                          <---------AHL20(2)                       --------->AHL20(1)                           --------->AHL20(2)                       --------->AHL20(2)                           <---------AHL20(2)                       <---------AHL20(1)                           <---------AHL20(1)                   <---------AHL20(2)  --------->HSFB2a(2)          --------->AHL20(1)                   --------->AHL20(2)  --------->LBD16            ------->TEIL    <------ZmHOX2a(1)                 --------->TOE2(3) <---------ARR14(2)          --------->ANAC58   ----------->GT1                 <----------DOF2   --------->ARR14(2)          --------->ANAC46  ----------->GT1 --------->At4g35610   <---------AHL20(2)                      --------->ANAC58  <----------ID1 ->ANAC58     ------->TEIL --------->YAB1    ---------->DOF2<-------TEIL      ---------->DOF2 ->ANAC58    <---------CCA1(2)    --------->RVE1(1)    <-----------RAV1(2) <---------TOE2(3)   <-----   attagcttaagctatgtatctttaattaattagaaaaaatccgagaaaaaaggaaactcaggtacacgaatttatttaagaaaaggataaatactctctt  1965800                                       >>>>>>>>>>MYB80                                       *TSS                                    --------->YAB1                                   <---------ATHB12                                 --------->WOX13(1)                               <---------ATHB12                              --------->ANAC58                           ------------>CBF                          --------->ANAC46                                                     <-----                          --------->ANAC58                                                   <-------      ---------->DOF2     --------->ANAC58  ---------->DOF2                            --------->TOE2(3) <-----------TBP---------->DOF2------------>CBF                                 ---------->DOF2<----- -----DOF2   --------->TOE2(3)--------->ANAC58       --------->HSFB2a(2)   ------>ZmHOX2a(1)---------   tttttttataaagaaccctaatgctctcacacaatcaatcaaaccaaaaagacttctcgtattcatgcctctccctcctaagaaaagaaccctaattttt  1965900                  <---------ICU4                  --------->YAB1                 --------->ICU4                 <---------YAB1               --------->YAB1               <---------ANAC58               <---------ICU4               <---------ANAC58            <---------ICU4                  <---------ANAC46            --------->YAB1                 <------NtERF2    --------->At4g35610                --------->At4g35610                                    <------NtERF2 --------->At4g35610<---------YAB1    ------->GAMYB                                     --------->SPL7 ----YAB1  <---------ATHB12          --------->MYB46(3)                            <---------ANAC58 --ICU4    --------->ICU4           -------->P  <------ZmHOX2a(1)                  <---------ANAC46 ----AHL20(2) <---------YAB1      --------->MYB46(3)         --------->ANAC58      <---------ANAC58 >ICU4   --------->GLK1(1)    <-------TEIL------>NtERF2      --------->ANAC58 --------->CCA1(2)   attatctgcagaaatcatcatcatgaacgagattcatcaaccgctggcgaggagagtatggagaagcaacgtcgatgaagagatggctcgtatggccgaa  1966000                                                        <---------ALFIN1                                                       --------->LBD16                                              --------->ICU4                                     --------->ZAT18   <---------ZAT18                             --                <---------ATHB12     <---------ZAT14 <---------LBD16    ------>ZmHOX2a(1)        ----    --------->ANAC58               --------->ZAT14 <-----------GT1  --------->ARR14(2)           ----    --------->ANAC58   <----------DOF2 ----------->RAV1(2)     <-----------GT1     ------->TEIL------   tgtctcaagcgattcccactcatcgctttcgatacagagtaccctggcattattttccgcacttatttcgattcctctagcgacgaatgttacagagcca  1966100                            ------>ZmHOX2a(2)                          --------->ARR14(2)           <---------HSFB2a(2)    <---------AtMYB61                       <---------MYB46(3)           --------->HSFB2a(2)  --------->ALFIN1                         <---------ANAC46          <---------ETT(2)<---------ARR14(2)         ------->GAMYB ------>ZmHOX2a(2)  ----------->GT1     --------->ZAT2                --------->ANAC58  --------->ALFIN1 -------->DOF2        <---------ZAT2                --------->ANAC58  <---------AtMYB61 ------->HVH21        <---------At4g35610    <----------DOF2       <---------DEAR3(1) ----->AtLEC2        ------>MYB46(1)    <-----------GT1           <------ZmHOX2a(2)   <-----------GT1 --------->AGL15     ------>MYB83--------->ZAT14    --------->ANAC46  <---------DEAR3(1)     <-------   tgaaaggtaatgtcgagaacaccaagctgatccagtgtggtttcactcttttcaacgccaagggagagatcggtggtgtttgggagattaacttctccaa  1966200                   --------->ANAC58                   <---------ANAC55(2)                   --------->ANAC55(2)                   --------->ANAC46                   --------->ANAC58         <-----------HVH21       --------->MYB46(3)    <---------ATERF1(1)      <----------DOF2                         <---------At4g35610    ------>NtERF2  --------->ANAC55(1)                        <---------ARR14(2)   ----------->HVH21        --------->HSFB2a(1)               --------->ARR14(2)   --------->DEAR3(1)    ------->GAMYB                   <---------ANAC46 <---------RAP2.3(1)  --------->MYB52(1)           <------NtERF2   --------->HSFB2a(2) ----------AGL1  <---------ALFIN1               <------ZmHOX2a(1)  <---------HSFB2a(2)<------ZmHOX2a(1)   tttcggcgacccatcagacacacgcaacgagctttccatcgaattcttgaggaggcatggtttggatttgcagaagattagagacgaaggagttgatatg  1966300  Previous    Next  AGI:  At1g06450.1    Description:  CCR4-NOT transcription complex protein, putative. similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT3G44240.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45475.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Ribonuclease CAF1; (InterPro:IPR006941) Range:  from: 1965839    to: 1967218    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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