Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                      --------->ARR11(3)                                                                                      <-----------ARR10                                                                                      <---------ARR14(2)                                                                                      --------->ARR14(2)                                                         <------NtERF2          --------->YAB1    ---                          --------------->AGL15  --------->ARR14(2)        --------->AHL20(2)<-------       ---------->DOF2 <-----------GT1           <---------ARR14(2)    <---------YAB1 <---------ARR11(3)      --------->AHL20(2)  <----------DOF2    --------->HSFB2a(2)    <---------TOE2(3)<---------GLK1(1) ------>YAB1         <---------AHL20(2)<---------ICU4   ------>NtERF2  --------->ICU4--------->RVE1(1)   tcagaaaattaaagcgattgcaatttatctttattttggaaacattaccagaatacggtgccaagggattgagataattgaataagaatatctgcctcgg  1944700                                                                                            ---------                                   --------->ANAC58                              ------>NtERF2                                   --------->ANAC46          ---------->ID1      --------->At4g35610    <---------ARR14(2)             --------->ANAC58      <---------ANAC46        <---------At4g35610    --------->ARR14(2)          <---------REM1(2)        <---------ANAC58       --------->DEAR3(1) ------ZmHOX2a(2)               --------->ZAT14          <---------ANAC58    --------->ANAC58 ------>GLK1(1)                 <---------ZAT14     <---------At4g35610      --------->ANAC46 --LBD16                  <-----------HVH21         --------->At4g35610      --------->ANAC58      <-   agatcgaattcgctctgatttagaagagcgtcactacacgaatcagcgttcttccgcttccttgttgccattgaagaagacgcagcctacaatgagttga  1944800                                                                                          <----------                                                                                         <---------MYB46(3)                                                                                         <---------DEAR3(2)                                                                                        <---------DEAR3(1)                                                                                       --------->ATERF1(1)                                                                                       <------NtERF2                                                                                      --------->LBD16                                                        ------>NtERF2                 ------>NtERF2                                                        --------->LBD16               <---------RAP2.3(1)                                                       <---------DEAR3(1)             <---------ATERF1(1)                             --------->ARR14(2)        --------->DEAR3(1)             <---------DEAR4(2)                             <---------ARR14(2)        <---------ATERF1(2)            <---------ERF1                         <-----------------AG----------->ARR10    ---------->DOF2    <---------ATERF1(2)                         <-----------------AGL1        --------->ATERF1(2)           <---------RAP2.3(2)                         <---------LBD16  --------->DEAR3(1)    <------NtERF2        --------->DEAR3(1)              --------->ARR11(3)      --------->At4g35610<------NtERF2               --------->ATERF1(2)          ---------->DOF2----------------->AGL1       <---------LBD16                <---------DEAR3(1)         <------ZmHOX2a(1) --------->LBD16<---------ANAC46     <---------LBD16      --------->ATERF1(1)   <-------TEIL        --------->MYB52(1)--------->At4g35610 --------->ALFIN1       <---------LBD16 >At4g35610   <---------ARR11(3)      <---------ZAT2 <---------RAP2.3(1)           <---------RAP2.3(1) --------------AtSPL8  <-----------GT1<---------At4g35610<---------MYB52(1)----------->ARR10<--------   agaggtacagaggaaagctcttaattaaccggaaacgggaagcagcgtcgattttcgccggcagtcggggaagcgcgaagagtttcgccggcggtcagag  1944900                                                      --------->TOE2(3)                             --------->LBD16         --------->ATHB12                            --------->HSFB2a(2) <---------ANAC58               ------------>CBF                 <---------ANAC46             ----------->HVH21           ---------->DOF2    <---------AHL20(2)           --------->At4g35610        <------ZmHOX2a(1)<---------YAB1           <---------At4g35610    ---------->DOF2    <--------HAHB4   --------->AHL20(2)   <------------CBF    <---------At5g28300   --------->ALFIN1   --------->ANAC58  --------->ATHB12    <-----------GT1<----------ID1  <---------ICU4   <---------AHL20(2) -HVH21 <---------At4g35610 <---------HSFB2a(2) <---------ANAC58--------->ANAC58 -WRKY12--------->At4g35610--------->LBD16--------->DAG2 --------->YAB1  <---------YAB1       -------   aaaacgattgagcagatgacaattttacccccagaaaaaaggataaagtggcgcatcattaataaaacgcatataatttttgagttttacaaaaaaaaaa  1945000                                                                                       --------->TOE2(2)                                                                                 --------->ANAC55(2)                                                                                 --------->YAB1                                                                                 --------->ANAC46                                                                                 <---------ANAC55(2)                                                                                 --------->ANAC55(1)                                       --------->YAB1                            --------->ANAC58   <                  ----------->GT1      ----------->GT1                           --------->ANAC58   -           --------->ETT(2)  <----------ID1                                 --------->LBD16    <-----    <---------AHL20(2)       ----------->GT1          <---------ICU4       <---------ANAC55(2)-------    --------->AHL20(2)     ---------->DOF2           <---------YAB1       <---------LBD16    <------- -->AHL20(2)     ------------------------>ANAC81   --------->YAB1  --------->TOE2(3)<---------ARR14(2)   atcgaataaaatgtcgaaagaagaaaaaaaaaagaaaaaaatcgtaaaccctataatttttgctcagaaccctaattccgcaaacgtaacctgtgttcat  1945100       <---------At4g35610   ------>NtERF2                                       ----------->HVH21  --------->RAP2.3(3)                                 --------->At4g35610  --------->DEAR3(1)                               <---------At4g35610  <---------ANAC46                                 --------->At4g35610  --------->RRTF1(3)                               --------->LBD16            --------->LBD16  --------->RAP2.3(2)                             --------->ANAC46           --------->ANAC58      -- --------->ORA47(2)                              <---------LBD16             --------->ANAC58      -- <------NtERF2                              <---------ALFIN1             <---------WRKY18(1)      <-- --------->ATERF1(1)                       --------->ZAT14              --------->WRKY38(1)       --- --------->DEAR4(2)                        --------->ZAT18          <---------TOE2(2)            ---- --------->RAP2.3(1) <---------------AtSPL3<---------ZAT18          <---------TOE1(2) --------->DOF5.7(2) ---------RAP2.3(1)  --------------->AtSPL8<---------ZAT14--------->REM1(1)  ----------->RAV1(1)<---- ----->NtERF2        <---------------AtSPL8<------NtERF2----------->RAV1(1) <---------LBD16     <---- -------CBF   --------->LBD16           --------->At4g35610         <---------TOE1(3)--------->TOE2(3) -->ATHB12  <---------LBD16             <---------At4g35610------>NtERF2--------->WRKY12        <---- --YAB1--------->At4g35610           <---------LBD16  <------NtERF2 <---------TOE2(3)--------->TOE1(3)   tgcgccgtcttctcaccggagaatgagtactactactactacggctgcacttccgcagcgacaccagtcgaaggttgacccgcagaacgttaacagagcc  1945200                                                                           <---------CCA1(2)        <---------At4g35610                                            <---------ANAC58        --------->At4g35610                                            <---------ANAC58 ------->ZAT14                                                         <---------ANAC46 ------->REM1(2)                                                    --------->ARR14(2)             -- -------MYB52(1)                                                    <---------ARR14(2)      --------- -------->HVH21                                                   <---------DEAR3(2)        <-------- ----->LBD16                 --------->ARR14(2)                   <---------MYB46(3) ----------->HVH21 -----ANAC58                 <---------ARR14(2)          --------->HSFB2a(2)       --------->YAB1  -- -----ANAC58         <---------PCF2                      <---------HSFB2a(2)      <---------ATHB12 <- -----ANAC46      --------->ALFIN1         <---------GLK1(1)   ------------>AtMYB77<---------ICU4 <--   gtgaagtctctgctaaaatggtgggactccaaatccaagaccgagaactctgaatcactcgagaacgacggtttcgtctatctaatcgtgacactgaaga  1945300                                                                                  <---------At4g35610                                                                                  --------->GLK1(1)                                                                                  <---------GLK1(1)                                                                                  --------->At4g35610                                                                          ------>ZmHOX2a(2)                                                                         --------->ARR14(1)                                                                         <------ZmHOX2a(2)                                                                         --------->CCA1(2)                                                                        --------->ARR11(3)                                                                        <---------ARR11(3)                                                                        <---------ARR14(3)                                                                        <---------ARR14(2)                                                                        --------->ARR14(2)                                                                        --------->ARR14(3)                                                                        --------->ARR11(1)                                                                       --------->GLK1(1)                                                                       <---------HSFB2a(1)                                                                       --------->HSFB2a(1)                                                           ------>ZmHOX2a(2)      <---------ZAT2                                                         --------->ARR14(2) --------->LBD16                                                         <---------ARR14(2) ------>NtERF2                                                 =================HOX2a_HOX2a --------->DEAR3(1)              ------>ZmHOX2a(2)                  ===============================HOX2a_HOX2a              ====================================HOX2a_HOX2a         ----------->ARR10             --------------->AtSPL3              ================================HOX2a_HOX2a    <---------MYB52(1)                           ------>ZmHOX2a(1)<------NtERF2 <------NtERF2 ------->ARR14(2)                          =====================================HOX2a_HOX2a >ZAT14      --------------->AtSPL8        =======================HOX2a_HOX2a<---------LBD16 -ZAT14--------->At4g35610        ======================HOX2a_HOX2a--------->DEAR3(1) --------------- ------->GLK1(2)                  ================HOX2a_HOX2a   <---------DEAR3(1)--------->ZAT2    - --------ARR14(2)    -------->P   ------>ZmHOX2a(2)      <---------AGP1<---------GLK1(1)     <------- -------GLK1(2)     <-----------GT1        ------>ZmHOX2a(1)  <-----------HVH21--------->LBD16     <-   gaatccctcagttggatcgtactaaccccttgatgatccctcttcctcatcctctcatcgatctggtcgccgaagatccgccggagctctgtttgatcat  1945400                                                              --------->GLK1(2)                                                            <---------HSFB2a(1)                                                            --------->HSFB2a(1)                                               <------ZmHOX2a(2)     --------->YAB1                                              <---------ARR11(3)    <---------ATHB12     ------------------------>ANAC81          --------->ARR11(3)    --------->MYB46(3) ------>NtERF2                      <----------DOF2         --------->HSFC1(2) ------>WRI1                    <---------RAP2.6(2)         <---------HSFC1(2)    ---------->DOF2 -------->ANAC46               <---------At4g35610  --------->At4g35610         <---------YAB1 --YAB1                 ---------->DOF2       <-----------ARR10   --------->WOX13(1)              <-- --------------------WRI1      --------->ATERF1(1)  <---------At4g35610 <---------ALFIN1          ---   cgacgacaaacacaagaacaaaatcacaaaggaagcggctttgaagaagatcgaagcagagaagattccaatcaccacagttattaaagtctccaaattg  1945500                                                                                       <---------ANAC46                                                                                      <---------LBD16                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        <------ZmHOX2a(1)           <---------MYB52(1)                                                      --------->ALFIN1              --------->ALFIN1                                                   <------NtERF2                  <---------MYB46(3)                                                  --------->LBD16                 <-----------RAV1(1)         --------->ANAC46                        <---------ANAC46               <---------At4g35610         --------->ANAC58                       <---------HSFB2a(2)             <---------ZAT2         --------->ANAC58                       --------->HSFB2a(2)            --------->GLK1(2) -------GLK1(1)         <------ZmHOX2a(1)       <---------LBD16            <---------HSFB2a(2) ------ ------>GLK1(1)      <------ZmHOX2a(1)         <---------ANAC46       <-----------RAV1(1) ---------->DOF2   aaatccgatttacgcaaattagaggaggagaagcgattcgagttgtatttcgcggagaggaggctaatgccgatgttgccgaagctgttggggaaagagt  1945600  Previous    Next  AGI:  At1g06380.1    Description:  ribosomal protein-related. similar to 60S ribosomal protein-related [Arabidopsis thaliana] (TAIR:AT2G42650.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70027.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65947.1); contains InterPro domain Ribosomal protein L1; (InterPro:IPR002143) Range:  from: 1945123    to: 1946075    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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