Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             <------ZmHOX2a(1)                                                                                          -----------               <-------TEIL                                                        --------->TOE2(3)              --------->CCA1(2)                                                    --------->TOE1(3)             <---------ARR14(2)                                                  <---------TOE2(3)    --------->AHL20(2)  --------->ZAT6    ---------->DOF2                   --------->TOE1(3) ---------GT1--------->ARR14(2)         <---------YAB1                      --------->TOE2(3) -------   ttacaatttaagacagatacatacttacactatatcacaaatatcaaagaaaaaaaaaacgttttccaaattccaaaactttaaacgttaagaggaataa  1847500                  ---------->DOF2              <---------ANAC58              <---------bZIP60(1)              --------->bZIP60(1)              <---------ANAC58              ----------->GT1              --------->ANAC55(2)              <---------ANAC55(2)                                           ------->TEIL           ----------->HVH21                                              ------->MYC3           ----------->TGA1                                               ------->MYC4         <---------ANAC58                                                 <-------MYC3         <---------ANAC58               ------>ZmHOX2a(1)                 <-------MYC2     <---------ANAC58                  --------->TOE2(3)                  ------->MYC2     <---------ANAC46                  --------->TOE1(3)      <---------TOE2(2) >GT1<---------ANAC58     ----------->GT1 ---------->DOF2     <---------TOE1(2)     <---------YAB1 -->AHL20(2)  <---------ANAC46 <-----------GT1               <-----------RAV1(2)  --------->YAB1   atatgtgtcttgtgtgacgtaaaagcattggtaaaaccattccttaaaacaaatacaaatgtctcaggtttatacatgtgcctattatgcttaactctta  1847600               <---------AHL20(2)               --------->AHL20(2)              <---------ATHB12            --------->WOX13(1)       <---------AHL20(1)          --------->MYB46(3)         --------->AHL20(1)         -------->P               <---------CCA1(2)       --------->AHL20(2)                       --        --------->MYB52(1)    --------->ANAC58            <---------AHL20(2)                      <--  --------->TOE1(1)           <---------ANAC46     <-----------GT1                        ---------->ID1 <---------HSFB2a(2)          --------->ANAC58--------->AHL20(1)                      <---------ANAC58 --------->HSFB2a(2)    --------->GLK1(2)     <---------AHL20(1)  <---------AHL20(2)  <---------ANAC58 <---------LBD16       <---------GLK1(2)  <---------AHL20(2)      --------->AHL20(2)  <---------ANAC46   attctcggactaaccaattaatcgagattcttacgcatatatattaaaaatattatctatttttttaaaaaaataggccaactaaatggcttgttgtttt  1847700                     ---------->DOF2            <----------ARF1                                            <---------ICU4            <----------ID1                                             --------->ATHB12   --------------->AGL15                                               -------->HAHB4   <---------------AGL15                                               --------->YAB1  <-----------------AGL2                                              <---------YAB1  ----------------->AGL3                                              --------->ICU4              ---  <-----------------AGL3        ---------->DOF2                       <---------ATHB12           ---- ---->ZmHOX2a(1) --------->ANAC58                                  --------->ICU4                ---- -------MYB59    --------->ANAC58--------->DAG2        <-------GAMYB--------->YAB1         ----------   cctaactaaatttggagacaaggcaaagacgatgtaaagtgtccaagtttatgttttcgttgttaagtagtaatgattactcaattccaccgatacaatc  1847800                    ------------>CBF                                           <---------CCA1(2)         ----------->RAV1(1)     <---------GLK1(2)                     <-----------GT1      --------->ANAC46     ------->TEIL                           --------->YAB1--------->ARR11(3) --->ZmHOX2a(1)    <----------DOF2                             --------->WOX13(1)          <--------- ----->TOE1(3)   --------->At4g35610                         ------------>CBF--------->YAB1--------->YAB1 ----->TOE2(3)   <---------At4g35610          <---------AHL20(2) <---------ATHB12 *TSS  --------->YAB1 -->CBF --------->ANAC46 <---------ZAT18    ----------->TBP  --------->WRKY18(1)<---------ARR11(3)   cttaatctccacaacattcagcttcaatgcaccaagattagcccctatataatcaaacctttggtcaatcatataactctcatatctcaaaaataacaat  1847900                                                                     ----------->GT1                                                                <---------ANAC58                    -                                                                <---------ANAC46                    -                                                                <---------ANAC58             <------ZmHOX2a(1)                                                                --------->ALFIN1             ========                                                               --------->MYB55(2)            ========                                                               <-------TEIL                 ---------                                                               <---------MYB46(3)    <----------DOF2<                                                              --------->ALFIN1       ================             ----------------->AGL1     <---------MYB46(3) <---------DEAR3(1)        <---------------AGL15          <---------DEAR3(2)      <------ZmHOX2a(1)     --------->DAG2               --------------->AGL15     ------>ZmHOX2a(1)<---------ATERF1(1)              ---------->DOF2    ---------->DOF2 <---------LBD16 --GT1----------->HVH21       ---------->DOF2     ---------->DOF2 --------->ALFIN1  <----------------   cccattcctcgacggtccaatgggggacaccacaaaggacgatgggtctagccaaagtaaagcggtgcgtggggaaaaaagagcattctttttcaggaaa  1848000                                                                                                <----                                                                                                <----                                                                                                <----                                                                                                <----                                                                        <---------------AGL15   <----        ------>ZmHOX2a(2)                                               --------------->AGL15   <----      --------->ARR14(2)             <---------DEAR3(1)                <-----------------AGL2  ------    --------->LBD16            <---------MYB52(1)                      ----------------->AGL3  <-----  <---------LBD16              --------->ALFIN1                        ----------------->AGL2<------- -------->TCP16(1)            <-------GAMYB                            <-----------------AGL3<------- ------>TEIL---------->DOF2  --------->MYB55(2)                 <---------ANAC46             -------- ==============HOX2a_HOX2a   <---------MYB46(3)                <------NtERF2         <---------ARR11(3) =============HOX2a_HOX2a    <-----------RAV1(1)         <---------MYB52(1)          --------->ARR11(3) >LBD16<------ZmHOX2a(2)     <----------DOF2            <-------GAMYB<-----------GT1--------->At4g35610 ---------ARR14(2)  <---------ARR11(3)     ------->TEIL<---------MYB46(3)           <---------At4g35610 =======================================================================================MADS_MADS   - -AGL1<---------ARR14(2)   <---------At4g35610         <-----------RAV1(1)<---------YAB1 <---------LBD16   tggacccggatcgatatagcgagagcttcggctgttggggctgtgcatctattgtgtctgttggctccgtttaactataaatgggaagctctccggttcg  1848100 --MYB83  <----------DOF2 -----ANAC55(1) --MYB46(1) -----ANAC46                                                                                 <------- -----ANAC58                                                                   ------>ZmHOX2a(1) -----ANAC58                                                                  --------->TOE2(3) --->MYB52(2)                                                            --------->At4g35610 <------- ----DEAR3(1)                                                            <---------At4g35610 -------- --ARR14(2)  --------->YAB1                                      --------->ARR11(3)   <---------ANAC46 --MYB52(1)<---------ZAT14                                       <---------ARR11(3)   <---------ANAC58 ->ARR14(2)--------->ZAT14                        --------->ARR11(3)    <---------TOE1(3)    <------- ---------->ARR10     <---------ZAT6             <------ZmHOX2a(1)  <----------DOF2   <---------ANAC58   gtgtgattctcgctatagtgactagtcttagcattacattttcataccataggaacttgactcacaagagctttaagcttcctaaatggcttgaatatcc  1848200                                                         <---------AHL20(2)             <----------DOF2                                                         <---------YAB1               <---------YAB1                                                         --------->AHL20(2)          --------->ARR11(3)                         <-----------RAV1(2)            --------->TOE2(3)            <---------ARR11(3) --ARR14(2)            <-----------HVH21              <---------AHL20(1)            --------->YAB1 ----GT1  ------>NtERF2<----------DOF2                --------->AHL20(1)      --------->ANAC46     <- ->ARR14(2)   <---------DAG2                         --------->YAB1    --------->AHL20(1)         <-- --ARR11(3)   <----------DOF2                    --------------->AGL15 <---------AHL20(1)      ------   attcgcttactctgcccttttcgcgcttcaggtaaacatatatcgttttgaccaaaaatattaatagaactaatatatatccacaattatctttgaatca  1848300                                   <---------ZAT18                                                 --                                   --------->ZAT14                            <---------ALFIN1    ---                                   --------->ZAT18                         --------->PCF2        <---                            <---------ANAC58                     <-------TEIL ----------->RAV1(1)<---         --------->LBD16    <---------ANAC58                   <---------GLK1(2)                 ----        <---------LBD16     <---------ANAC46                   --------->ARR14(2)               <---- ---------DOF2         --------->ATHB12  <---------TOE2(2)     <---------ARR14(2)       ------>ZmHOX2a(1) -------ICU4<-----------HVH21      <---------ZAT14       --------->ZAT14 ----------->HVH21    <------ --->YAB1<---------TOE1(2) <---------MYB46(3)            <---------ZAT14<-----------HVH21     <------   tcttttcttcccagggtcatccaatagattgggtgagtacacataggttccatcaccagttcacagattcagaccgtgacccacatagtcctatcgaagg  1848400  Previous    Next  AGI:  At1g06090.1    Description:  fatty acid desaturase family protein. Identical to Delta-9 desaturase-like 1 protein [Arabidopsis Thaliana] (GB:Q9LND9;GB:Q8LDI2); similar to fatty acid desaturase family protein [Arabidopsis thaliana] (TAIR:AT1G06120.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62719.1); contains InterPro domain Fatty acid desaturase, type 1, core (InterPro:IPR015876); contains InterPro domain Fatty acid desaturase, type 1; (InterPro:IPR005804); contains InterPro domain Fatty acid desaturase, type 1, C-terminal; (InterPro:IPR001522); contains InterPro domain Fatty acid desaturase, type 1, N-terminal; (InterPro:IPR010257) Range:  from: 1847882    to: 1849692    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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