Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   ----                                                                                               ------                                                                                    <---------ZAT2                                                                                    --------->ZAT2           ------->TEIL                 <---------MYB52(1)<---------ALFIN1          --------->ZAT14         <-------TEIL         --------->ANAC58         --------->AtMYB61       --------->At4g35610        --------->AtLEC2      --------->ANAC58 ------>ZmHOX2a(1)               <---------At4g35610   gataaactacatgcatccacaataaccttctccagcaatacggtttgtcctgaaacaccaccatcttccttcaaatgctggagcagagcaggcttcataa  1807100                                                                                              <------                                                                                              -------           --------->ANAC58                                                                  --------           --------->ANAC58                                                          ------->GAMYB          <---------LBD16                                                         ===================      ----------->ARR10                                  <-----------RAV1(1)      ----------->RAV1(1)      --------->ANAC58                              <----------DOF2               --------->MYB52(1)      --------->ANAC58                        --------->ARR14(2)             ----------->RAV1(1)  --------->At4g35610  ---------->DOF2        <---------ARR14(2)             ======================== ----->ZAT6<---------ANAC55(2)               <------ZmHOX2a(1)       <---------REM1(1)      ------->TEIL --->MYB52(1) ---------->DOF2               <---------YAB1       --------->ICU4  --------->ANAC46 XXX   cagtagctaagctacggaaagactcaaaagacaaacattcaagatgaggattgtcttttctgtggtaatagttgtagagcaacacaacagcatgaacctg  1807200 ---LBD16 -->TOE1(2)                                       --------->ANAC58 --->RAV1(2)                                      --------->ANAC58 ====RAV                 ----------->GT1<----------DOF2  --------->ZAT14        --------->AHL20(2) <- ====RAV            ---------->DOF2     --------->TOE2(3)<---------ZAT14  >>>>>>>>>MYB2 --------->GLK1(1) XXXXXXXXXXXXXXXXXX>MIR2935     --------->MYB52(1)--------->ANAC46   <---------TOE2(3) --------->ARR11(3)   gaatcaaacaaacaccatttttgaaagaagaaaaaaacagaactttaaaaacaaggcattgcagtctaattaagaaaaccaatttaagagatttcgaagt  1807300                   --------->MYB52(1)                  <-------TEIL                 --------->CCA1(2)                --------->ARR14(2)                 <------MYB83            <---------At4g35610                    <------MYB46(1)           ----------->RAV1(1)            <------ZmHOX2a(2)       ---------->DOF2 <---------ZAT2 <---------ARR14(2)       --------->ARR11(3)    --------->ANAC58 ----------->RAV1(2)<---------LBD16      <---------ARR11(3)    --------->ANAC58   <----------DOF2 ======================RAV     --------->ALFIN1  <---------MYB52(1)        <---------------------WRI1 --------ALFIN1 <---------GLK1(2)      ----------->ARR10<---------YAB1   <---------ETT(2) ---------->DOF2   cccacctgtttggcaacagattcacggatagaagtggaaggaagatcatcagttggttttgatggaagcaaagggtcgactaagctttctaataaagctc  1807400                          --------->LBD16                         <---------ANAC46             --------->ETT(1)           <-----------HVH21          <-----------RAV1(1)        <---------At4g35610        ------>ZmHOX2a(1)<---------ANAC58        --------->At4g35610     <------NtERF2       <---------ANAC58    <---------SPL7    --------->GLK1(2)   <---------ANAC46   --------->ARR14(2)                                    ---------->DOF2   <---------RAP2.6(2)<---------ARR14(2) ----------->GT1                 --------->ANAC46    --------   <---------ANAC58--------->ANAC58    <---------ANAC46            ---------->DOF2    ---------->DOF2   <---------ANAC58--------->ANAC58 ----------->HVH21         ------>ZmHOX2a(1)    >>>>>>>>>TBF1 ----   gaatggcgtcctctgtcggacaagaatccgtggtcttcgtgactggtaaactgcaatctacttcctccataaaacccgaaaagaagaagaaagagaaaag  1807500                                                                                   <---------MYB52(1)                                                                                 --------------->AGL15                                                                                ----------------->AGL2                                                                                <-----------------AGL2                                                                                <-----------------AGL1                                              --------->LBD16                   <-----------------AGL3                                             =====================================================MADS_MADS                                             <---------LBD16                    ----------------->AGL3                             --------->DAG2  --------------->AGL15              ----------------->AGL1                      <---------ETT(2)      ----------------->AGL1              ----------------->AG                      --------->ETT(2)      <-----------------AGL1              <-----------------AG                  <---------MYB46(3)    <---------DAG2                         <---------At5g28300                 <---------ANAC46       <----------DOF2                       <-----------GT1 -->DOF2       --------->ATHB12  --------->ZAT18 ---------->DOF2         ------------>CBF ------>DOF2  <---------ZAT6---------->DOF2 <---------LBD16     <---------GLK1(2)<---------------AGL15   aaagttgcgatttttagtgatgggtagacagaaagtgaacaactttaccgggaaaggaaaaccctagatttgttctccaattaccgtttttggtaaatga  1807600                                                                                     <------------CBF                                                                                    --------->ATHB51                                                                                   <---------YAB1                                                                                 --------->YAB1                                                                                 <---------ICU4                                                        <---------ANAC46        <---------YAB1                <---------At4g35610                     <---------ANAC58        --------->ICU4                --------->At4g35610                     <---------ANAC58      <---------ICU4                --------->ZAT2                 --------->At4g35610           <---------YAB1                <---------ZAT2              <------ZmHOX2a(2)              --------->YAB1            <-----------HVH21              <---------ARR11(3)             --------->AHL20(2)  ----------->GT1                          --------->ARR11(3)  <-----------GT1--------->YAB1    -----   gagagagtgatatgtgtcagctctctctctctctctctctctcaagatcatctaaacttcgtgtttttcatttccatttattattattattgtttagtta  1807700                          <---------ANAC58                          <---------ANAC58                 ------------>CBF                                                         --------->ATHB51                 <------NtERF2                                                            --------->ATHB12                ------>NtERF2                                                            <---------YAB1               --------->RAP2.6(2)                                                  <---------SPL7          --------->ARR14(2)                                                       <---------ANAC58          <---------ARR14(2)                                                       <---------ANAC58   <---------GLK1(1)      <---------LBD16                                          <---------ANAC46   --------->GLK1(1)      <---------ANAC46                                        --------------->AtSPL8   <---------HSFB2a(1)   <---------LBD16                       <----------DOF2    --------------->AtSPL3 ---->MYB52(2) --------->ANAC46 <----------DOF2      <----------DOF2            <-----------RAV1(1) <   gtgggaaattcgaataggcgccaatatttcggggctttactgtaatactgtgtctcttttgagggcatttttggaaaattttctgtcgtacattattgga  1807800                                       <---------HSFB2a(1)                             --------->TOE1(2)                             <---------SPL7                            <---------ANAC46                            ======================================bZIP_DOF  -------->HAHB4                            <---------bZIP60(2)                             --------->YAB1                            <---------TGA1a<---------DEAR3(1)               <---------ICU4                            <---------ANAC58                               --------->ICU4                            <---------ANAC58 <------NtERF2                 <---------YAB1                            --------->TGA1a--------->ETT(1)              <---------ICU4                ======================bZIP_DOF    ----------->GT1     --------->ANAC55(2)                <----------DOF2      --------->MYB52(1)---------->DOF2--------->YAB1 ------ZmHOX2a(1)           <---------O2 <-----------HVH21           <-------TEIL   taggactgttcaatttgacttttgagtttgacgtgcgaagaacggtcggagaacgtttaaagactaatacatacataatgatgacatttggattttgttt  1807900                                                        --------->AHL20(1)                                                        --------->ARR11(3)                           <---------ANAC58             <---------ARR11(3)                      -----                 <---------ANAC46                     --------->AHL20(1)                        -----                 ----------->GT1                      <---------AHL20(1)              <---------AHL20(2)               ----------->GT1                 --------->ANAC46                      <---------AHL20(2)           <---------AHL20(2)        <---------YAB1   <---------ARR11(3)         <---------AHL20(2)          --------->AHL20(2)   ---------->DOF2 --------->ANAC58           <-----------GT1   <--------       --------->HSFB2a(2) <---------ANAC58    --------->ANAC58        --------->YAB1--------->AHL20(2)       <---------HSFB2a(2) <---------ANAC46<-----------GT1   --------->YAB1      --------->AHL20(2)   caaatgtttctataaaattgtgtaaatttgcgttaaaccacgattatacaagtcaatatatattcagaactaattgtaactcatttattaattcagataa  1808000  Previous    Next  AGI:  At1g05950.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO64784.1); contains domain dsRNA-binding domain-like (SSF54768) Range:  from: 1804572    to: 1807470    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g05960.1    Description:  binding. similar to cyclin-related [Arabidopsis thaliana] (TAIR:AT2G41830.1); similar to binding [Arabidopsis thaliana] (TAIR:AT5G21080.1); similar to hypothetical protein OsJ_004318 [Oryza sativa (japonica cultivar-group)] (GB:EAZ14493.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64787.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23570.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024) Range:  from: 1807972    to: 1815473    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version