Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   -------->P                                                                                 ------>MYB46(1)                                                                           <---------ARR14(2)                                                     <---------At4g35610   --------->ARR14(2)                         <---------ANAC58            --------->At4g35610  --------->At4g35610                         <---------ANAC58          <---------ICU4       --------->YAB1                     <---------SPL7               --------->At4g35610  <---------ATHB12             -                    ============================HOX2a_HOX2a          --------->WOX13(1)             <       <---------ANAC58------->TEIL             --------->YAB1     ------------>CBF               ---     <-----------GT1------>ZmHOX2a(2)   --------->TOE2(3)         --------->ANAC46              <---- ->ANAC58          --------------->AtSPL3------>ZmHOX2a(1)        --------->ANAC58              ----- ->ANAC58       <---------ZAT6       <---------ARR14(2)           --------->ANAC58             ------ >DOF2 <---------ANAC58--------->SPL7--------->ARR14(2)  ----------->RAV1(1)     ------>MYB83  <-----   ctacaaattacatgcctagtgatcgtaccttgctcatggaatcctcagaatcatcagcacaacatttcaagcaatcagataccaactctgcaaacaagat  1718500 --------->YAB1                               --------->TOE2(3) ----------->CBF                              <----------DOF2         --------->AHL20(2) ---------ATHB12                   ------>ZmHOX2a(1)            <---------At4g35610 ------>WOX13(1)               <---------ALFIN1              ------>ZmHOX2a(2) --ZmHOX2a(2)           <---------ICU4      ------>MYB46(1)--------->ARR11(3) ------->CBF         ----------->GT1        ------>MYB83<---------KAN4(2)                          <- --->ARR11(3) <---------------AGL15=================================HOX2a_HOX2a                 ----- ----ARR11(3) ------------>CBF --------->ANAC46       *TSS <---------ARR11(3) --------->ANAC46 <-----   caatcaatataagataaccaatttagtaattccactcctcaaaaccaactttagagagaatgatctagctcataaaatacacaaaaactaaaatatagaa  1718600                                                                               --------->ANAC55(2)                          --------->At5g28300                      --------->TOE2(3)                       <---------ZAT14                            <---------HSFC1(2)                       --------->ZAT14                            --------->HSFC1(2)                   <---------ARR14(2)                             --------->HSFB2a(1)              --------->ANAC58                                <---------MYB52(2)  <---------ARR14(2)      ----------->GT1  --------->ZAT18          --------->ANAC58  <---------HSFB2a(1)   <---------LBD16 --------->ARR14(2)           --------->ANAC58 ------->TEIL<---------DOF5.7(2) ---------DOF2--------->ANAC58             --------->DAG2     --------->ANAC58<---------TOE1(3) ---->GLK1(2)--------->DAG2         <------ZmHOX2a(2)  ---------->DOF2     ------>ZmHOX2a(1) -------- ----GLK1(2)---------->DOF2--------->ICU4 ---------->DOF2     --------->ANAC58<---------TOE2(3)     -   tcttttgggggaaaaaaagcaaaactgcagtaattgagatcaaataaagcacgcatagaaaggcacgaaccttggtccttaacgtattcagagagtgagt  1718700                                      ------>ZmHOX2a(1)                                    ------>ZmHOX2a(2)           <----------DOF2                                   <------ZmHOX2a(2)     --------->At4g35610       ------>NtERF2                                  <---------ARR11(3)     --------->ZAT2    <------ZmHOX2a(2)                                  <---------ARR14(2)     <---------At4g35610------>ZmHOX2a(2)       --------->At4g35610        --------->ARR11(3)     <---------ZAT2   <---------ARR11(3)        <       --------->ZAT2             <---------GLK1(2)  <----------CDC5      --------->ARR11(3)       <-       <---------ZAT2             --------->ARR14(2)<---------At4g35610 ----------->ARR10        <---       <---------At4g35610        --------->AGP1    --------->ZAT14 --------->At4g35610        <----- ->ATHB12     --------->ZAT18   ----------->ARR10   <---------ZAT14 <---------At4g35610    --------->YAB1 -------->WOX13(1)    --------->At4g35610     <----------DOF2 <----------DOF2  <---------DEAR3(1)----   ggcaatcggagcagagtgcaagaccgctaaaccctagatcctcacattctttagtgctgagctgctcttttgctgagatcgtcgatgccaatatcaaaat  1718800                                                                         --------->ANAC58                                                                         --------->ANAC58                                                                         --------->ANAC46                                                                      ----------->HVH21                                                                     ------>ZmHOX2a(2)                                                                    --------->CCA1(2)                                                                    <------ZmHOX2a(2)                                                                   --------->AGP1                                                                   <---------ARR14(2)                                                                   --------->ARR14(2)            <---                                                                  --------->At4g35610            <--- ---------ICU4          --------->ANAC46                          --------->GLK1(1)          -------- --------YAB1     ------->GAMYB                                   <---------GLK1(1)         --------- ------ICU4      --------->MYB46(3)                         ----------------------->TaNAC69(2) ------ ----ARR11(3)   -------->P   <---------CCA1(2)      <------ZmHOX2a(2)--------->DEAR3(2)     <-------- ----->YAB1   --------->MYB46(3)              ----------->RAV1(1) <---------At4g35610   <-----------RAV1(1)   catcatcgctgataaaacaaccatcttcgccatctctctctgtttcatcaacagatcaaagtcttcgcagatccgacgctactctaactaatgtcgctgc  1718900                          <---------MYB52(1)                  <---------WRKY38(1)                 --------->WRKY18(1)                --------->YAB1                                  -                 ------------>CBF              ------------>CBF                                     -                <-----------HVH21             --------->ANAC58                                      -        *TSS   --------->LBD16                --------->ANAC58                                      -    ----------->ARR10  <---------LBD16       --------->DAG2                              ============    <---------YAB1<---------WRKY12          ---------->DOF2                           --------->AHL20(2) ------ANAC58  ----------->GT1           --------->LBD16                             --------->AHL20(2) ------ANAC58------>ZmHOX2a(2)       --------->GLK1(2)                           ----------->TBP    = ->ATERF1(1)<------ZmHOX2a(2)        --------->ARR14(2)                     --------->LBD16        -- >At4g35610<---------ARR14(2)        <---------ARR14(2)                     ----------->GT1        -- >NtERF2------>ZmHOX2a(2)--------->LBD16--------->ANAC46                  <---------LBD16---------->DOF2 -At4g35610--------->ARR14(2)     --------->ANAC55(2)           <------ZmHOX2a(1)<---------YAB1  ----   cttgctatgatccgatccggtcaattccggttttttaagtatccgaaaaagcaatcttggtatagaggaaaccatctccggttataaataaaaaagtctt  1719000            <---------ZAT6            ----------->GT1         --------->DAG2        ---------->DOF2   <---------TGA1a   --------->TGA1a   ============================================MYC_MYB   <---------O2   ================bZIP_DOF   <---------ANAC46   --------->O2  <-----------------------TaNAC69(2) -------->TOE2(2) -------->DEAR3(1) ---------->HVH21 ------>GAMYB----------->GT1 ============bZIP_DOF                         <------ZmHOX2a(2) ============MYC_MYB                       <---------ANAC58 ------->DEAR3(2)                          <---------ANAC58 ------->MYB46(3)                      <-------GAMYB  --------->TOE2(3)                   <------ZmHOX2a(2) ----->MYB52(1)                       <-----------RAV1(1)              --------->YAB1 <---------HSFB2a(2)   aaccgacgtgaaaagtgttaaaaccccaattcacattagcctgttgcgatctaaaacctctaaaaccctagaatcaaaatcgcccattcgagatcgagag  1719100                          <------ZmHOX2a(1)                    --------->At4g35610                    <------NtERF2                    <---------At4g35610                  <---------DEAR3(1)                  <-----------RAV1(2)                 --------->ATERF1(1)                 <------NtERF2               <---------RAP2.6(2)                                                     --------->ANAC58              --------->RAP2.6(3)      <---------ANAC46                                --------->YAB1             --------->MYB52(1)      --------->MYB52(1)                                --------->ANAC58       ==========================HOX2a_HOX2a  <------ZmHOX2a(1)                 --------->At4g35610 =       <------ZmHOX2a(2)--------->ALFIN1------->GAMYB                        <---------At4g35610    -   agacgatggatcacatagcggcagcggaggagcaaattgtaacggagaggattagaagaaaacttgaagaagttaatgcaactgctcaatcgcaactctc  1719200                                                    <---------------AGL15                                                    <----------DOF2                                                    <---------DAG2                                                    =================================================                                           <<<<<<<<<ARR2                      <-----------------AGL1--------->YAB1                  ------>ZmHOX2a(1)         <------ZmHOX2a(2)                 <---------ATHB12            ------>ZmHOX2a(2)            <        <---------ARR11(3)               --------->WOX13(1)          <---------ARR14(2)             -        --------->ARR11(3)<-----------HVH21<<<<<<<<<ARR1             --------->ARR14(2)            <- ===============HOX2a_HOX2a <-----------RAV1(2)    <---------DAG2  ------>ZmHOX2a(1)     ------->TEIL ----->ZmHOX2a(1)    <-----------GT1  <-----------GT1     ---------->ID1 ------>ZmHOX2a(1)         <-   tcctattcaagatcacatcaatttcacccttcaggtatattaacaatcatatacctttttgtagcattcctgatcctcctactcataggtgtatgttatt  1719300                                    ----------------->AG                                    ----------------->AGL1 <-----------GT1             <----------ID1                                    ================================================================= =====================================================MADS_MADS                        ----------->GT1 ---------ZAT18          ----------->HVH21           <---------RAP2.6(3)           ---------->DOF2 -------->ZAT18          --------->WRKY38(1)    --------->DAG2                   --------->MYB46(3) --------ANAC58      <---------ANAC46          ---------->DOF2                 ----------->RAV1(1) --------ANAC58 <---------YAB1    <-----------GT1   --------->RAP2.6(2)     --------->ANAC46      ---   tgtgtgctcgtgttgattttgattcgggtgaccaatttaccaattctgaaaaagccgaaattttccttcaacttgtaatcgcaacaaaagagaaaaactt  1719400  Previous    Next  AGI:  At1g05720.1    Description:  selenoprotein family protein. similar to putative 15kDa selenoprotein [Brassica rapa] (GB:BAF81524.1); contains InterPro domain Sep15/SelM redox (InterPro:IPR014912) Range:  from: 1717446    to: 1718908    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g05730.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G31725.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73933.1); contains InterPro domain Protein of unknown function DUF842, eukaryotic (InterPro:IPR008560) Range:  from: 1718554    to: 1720302    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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