Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 ------                                                                                               ------                                                                                               ------                                                                                              -------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                             <-------                                                       --------->ANAC58                      ------->GAMYB                                                       --------->ANAC58                      <-------                                                   ------>NtERF2                             <-------                                                   --------->LBD16                           --------                                                  <---------LBD16                            --------                                              --------->GLK1(1)                              <-------                                              <---------GLK1(1)                             ---------       --------->At4g35610          <---------ICU4<---------ETT(1)                   --------->HSFB2a(1)       --------->CCA1(2)      <------ZmHOX2a(1)  <---------LBD16                     <---------HSFB2a(1)   <------ZmHOX2a(1)     --------->LBD16     --------->ARR14(2)                    ---------->DOF2 ------>CCA1(2)         <---------LBD16      <---------ARR14(2)        --------->At4g35610  --------- ----ZAT6 <-------TEIL <---------LBD16       <---------GLK1(2)      <---------MYB52(1)    <---------ALFIN1   atagaggagagatgcatactctaacaccgggaggacaattctgaccagatttccggcaagaccagaacccattagctcgagcgtcgaaagtcccaccgac  1695700     <---------ARR14(2)     --------->ARR14(2)    <---------GLK1(2) >MYB46(1) >MYB83                                                                             --------->ANAC58 -->P--------->GLK1(2)                                                              --------->ANAC46 -->ORA47(1)                                                                    <---------ARR14(2) ->DEAR3(1)                                                                   <---------MYB46(3) ->DEAR4(1)                                                                   <---------DEAR3(2) ->DREB2C(2)                             <---------GLK1(2)                 ------------>AtMYB77 --MYB46(2)                              --------->ARR14(2)                --------->MYB52(1) --MYB111(2)                --------->ARR14(2)                            ----------->HVH21 --MYB55(2)    --------->TOE1(3)   --------->ANAC58                --------->LBD16  --------->ANAC58 ->MYB46(3)    <---------DAG2  --------->HSFB2a(2)                <---------HSFB2a(2) --->HVH21     --------->TOE2(3)   --------->ANAC58               --------->HSFB2a(2)    --------->O2 --MYB111(1) <---------TOE1(3) <---------HSFB2a(2)      ------>ZmHOX2a(1) <---------ATHB12 >DEAR3(2)  <-----------GT1 <---------ARR14(2)      --------->ARR11(3)    ----------->TGA1      ----- >MYB46(3)<---------MYB52(1)--------->GLK1(2)   ---------->DOF2  <---------LBD16--------->ARR14(2)   cagtgagaatctgttaaccttattgaagagaatccagaagccagaattgccaaaggtcctgtaatcttccggagcaatgacggttccagccacttgaaat  1695800                                                                    --------->DEAR3(1)                                                                 --------->AtMYB61                                                                 <---------ALFIN1                                                                 --------->DEAR3(1)                                                                --------->MYB46(3)                                                                <---------MYB55(2)                                                              --------->AtMYB61                                                              <---------ALFIN1                                                             --------->MYB46(3)                                                           --------->PCF2                           --------->TOE2(3)      ----------------->AGL1                          ----------->GT1 ------->GAMYB    <---------PCF5                   ---------                    ------>ZmHOX2a(1)  ----------->RAV1(1) <---------TCP16(1)               ---------            <---------ANAC58       --------->TOE2(3)  <---------STY1(1)                     ---------            <---------AtLEC2       --------->TOE1(3)  --------->STY1(1)          --------->At4g35610 ------>GT1 <---------ANAC58    <-----------GT1   <-----------------AGL1       --------->ARR11(3)   gtgattttgctcttgcatggtcctccaaacgttattaccttcaacagaaatgtccccttggggaccaccaccgtggctgaagatgctgagacacaagccc  1695900                                                             <---------DOF5.7(2)                                                     --------->ANAC58                                  <---------ATERF1(1)<------NtERF2                                 ----------->HVH21   --------->ANAC58                      --------->LBD16     --------->SPL7  --------->At4g35610      --------->RAP2.3(1)                    <---------LBD16     <-----------HVH21 <---------At4g35610      <------NtERF2       <---------ANAC58     --------->GLK1(2) --------->ARR14(2)                  <---------RAP2.3(1)       <---------ANAC58<---------MYB52(1)<---------MYB52(1)<---------MYB52(2)    <---------DEAR3(1) >ANAC46        --------->HSFB2a(1)     <---------SPL7--------->DEAR3(1)         <---------RAP2.3(3) >ANAC58        <---------HSFB2a(1) ------------------>SPL14 --------->MYB52(1)  <---------RAP2.3(2) >ANAC58     <------ZmHOX2a(1)  <-----------HVH21   ------>NtERF2           --------->TOE1(2)       -   cttgccatgccttgaggaatgctccggtagaatcggtgactccgtccggtttggcaccgaagctaacgacgttgaaaacgttggaggcgctaatcgagac  1696000                                <---------ARR11(3)                                --------->GLK1(2)                           ----------->GT1                          ----------->GT1               --------->ALFIN1 --------->ARR11(3)  <---------ATHB12--------->REM1(2)    <-----------GT1 -------->WOX13(1)<---------ZAT14     <---------YAB1                                 <------------CBF   atcaatgaaggtgagaagtgtgaagagaagggaaaatcttataactgattttgtcatttcttatatgtgagtttgagtttgtgtttgaattgattttgat  1696100                                                                                          <---------ANAC58                                                                                          <---------ANAC46                                                                                          <---------ANAC58                                                                                          <---------ANAC55(1)                                                     <------------CBF                     <---------ANAC55(2)                                                    --------->ATHB12                   <---------MYB52(1)                                                   <---------MYB52(1)                 <-------GAMYB                                                  <-------GAMYB                      <---------ANAC58                                                 --------->MYB52(2)                  <---------ANAC58                         --------->DAG2         <-------TEIL                      ------->MYC2                        ---------->DOF2      <---------MYB46(3)                   <-------MYC2                   --------------->AGL15     <------MYB46(1)                      <-------MYC3                --------->ARR11(3)           <------MYB83                         ------->MYC4                <---------ARR11(3)         <---------WOX13(1)                 <-------TEIL--------->ANAC55(2)               <---------CCA1(2)          <------------CBF               --------->AHL20(2)     <---------AtLEC2<-----------TBP     --------->ATHB12           ------------>CBF<-------TEIL   --------->AtLEC2<---------------AGL15--------->ICU4           ----------->GT1  ------->MYC3     --   <---------YAB1 ----------------->AGL3<---------YAB1          <---------------AtSPL8<----------DOF2   gcatcatgcatgggtatatatctatataaagcgagagagagcatgattggttcgttattggagtctatggtacaattaagtacatgtgcgttacgttttt  1696200                                                                                                   <-                                                                                                  ---                                                                                                  <--                                       --------->DAG2                                             ---                                    >>>>>>>>>>GATA-3                                              ---                              --------->AHL20(2)                                                 ----                            <-----------TBP                          >>>>>>>>>GATA-1             <---                      ------->MYC4  >>>>>>>>>>GATA-1              <---------WOX13(1)          -------                      ------->MYC3  >>>>>>>>>>GATA-4            --------->ATHB12              <------                      ------->MYC2  >>>>>>>>>>GATA-2           <---------YAB1                <-------                      <-------MYC3 --------->YAB1            --------->YAB1  --------->ARR11(3)  <---                      <-------MYC2<---------YAB1           <-----------GT1   <---------ARR11(3)------ ------->YAB1------------>CBF <---------AHL20(2)      <---------AHL20(2) ---------->DOF2 ------------   atcaaaaaaaaaaaaaacaatacatgtgcgatttatatgataaggggtttgtgtatttttttttcatgatagataaaaagagcttaacatttccaattaa  1696300 -----------CBF                           <-------PIF5 ------>ATHB12                            ------->PIF5 -------ICU4                             <---------ANAC46 ----->ATHB1                             <---------ANAC58 ------>YAB1                             <---------bZIP60(2) ----->ICU4                              <---------ANAC58 ------YAB1                            <------ZmHOX2a(1) -->AHL20(2)                       ---------->DOF2                               <---------AHL20(2) ---AHL20(2)                --------->HSFC1(1)                                  <---------AHL20(1) --ATHB12<-------MYC3       --------->HSFB2a(2)                              --------->YAB1       --- ------ATHB12<---------WOX13(1)<------ZmHOX2a(1)        --------->YAB1      <---------YAB1        <-- --->WOX13(1)<--------P     <---------HSFC1(1)       --------->YAB1       <-----------GT1         <-- >CBF    ------->MYC3       <---------HSFB2a(2)    ------------>CBF       --------->YAB1          ---   tcattgggacacatggttgatatcgaatttctaggagcaaaggacgtggtatcaacaatgacatttttgcacatatttatcatatatttgtatatatgaa  1696400                          <---------AHL20(2)                      <---------AHL20(2)                       <---------ANAC46            --------->ZAT14                     <---------YAB1                           <-----------------------TaNAC69(2) <-----------GT1    <---------AHL20(2)                     --------->At5g28300             --------->At4g35610 ------>AHL20(2)  <---------YAB1                          ------->GAMYB        ----------->GT1 -------AHL20(2)<---------AHL20(2)                     --------->MYB52(1)--------->TOE2(3) <---------ZAT14 -------ICU4   <---------YAB1                       --------->ANAC46    --------->YAB1    ------->GAMYB ------>ATHB51<---------AHL20(2) ---------->DOF2  <-----------GT1  <---------YAB1       --------->At4g35610   ttatttctatttctatttttatttttattttttcttgaagcgcgtccaaaatttactcaacggtgacttatgaaacataaatagaaaatcaactgcagac  1696500                                                                                         ---------->DOF2                --------->AHL20(2)                                                   ---------->DOF2-            ----------->GT1          <-----------HVH21                     ---------->DOF2       <---           <---------TOE2(3)        <---------ZAT6                    <---------------AGL15--------->ANAC58           <---------TOE1(3)   <----------DOF2                        ===============================     --------------->AGL15    <---------ANAC58             --------->AHL20(2)  <---------ICU4  ------    <-----------------AG      <---------ANAC58     <---------AHL20(2) --------------->AGL15--------->ANAC58    ==================================================================================MADS_MADS------   ccaaaaacctgttatggataaaatgttctattgctttagtgtcatagcatcaatttatcgataaaatacgaactcttaaaagaattacaaagaaagcaag  1696600  Previous    Next  AGI:  At1g05660.1    Description:  polygalacturonase, putative / pectinase, putative. similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT1G05650.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68140.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 1694285    to: 1696057    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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