Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    ------->MYC3                                                  -------->ABF1                                                  <-------MYC2                                                  ------->MYC2                                                  <-------MYC4                                                  ------->MYC4                                                  <-------MYC3                        --------->ARR14(2)       --------->TGA1a                        <---------ARR14(2)       --------->ANAC46                       <---------CCA1(2)         <---------ANAC55(2)                  ----------->HVH21      ---------->DOF2<---------ANAC58            --------->O2                 <------NtERF2     <----------DOF2 --------->ANAC55(2)         --------->ANAC55(2)         ------>NtERF2   --------->At4g35610 --------->GLK1(1)         <---------TGA1a         --------->DEAR3(1) ---------->RAV1(2)  <---------ANAC58            <---------O2            ----------->HVH21 --->ZmHOX2a(2)    <---------ANAC46        --------->YAB1               --------->DEAR3(2) ---ZmHOX2a(2)  --------->GLK1(1)         <---------ATHB12           --------->MYB46(3)  ------------ ---->ARR14(2) <---------ARR14(2)       --------->WOX13(1)<------ZmHOX2a(1) <---------DEAR3(1)     <- -----ARR14(2) --------->ARR14(2)  ------>ZmHOX2a(1)   --------->HSFB2a(2)--------->MYB52(1)      <--   tcgcctgcttaagcgcagatttcgcgtatccaaactcctcttcaatcatacacgtgtccaggacaaaaacaaacaccgacggcgaaggctgaccagaaac  1635300                                                                         <---------ANAC46                                                                       <---------ZAT14                                                                     --------->ZAT18              <---------ICU4                                         <---------ZAT14             <---------YAB1     --------->At4g35610                  --------->ZAT14               <x    <-----------HVH21   ----------->RAV1(1)       <------NtERF2      <---------ZAT18      --------->ANAC46 ----->AGL2--------->YAB1       <---------At4g35610<---------ANAC46 <---------ZAT6   --------->ZAT18 --------ALFIN1        <---------ALFIN1      --------->MYB46(2)------->GAMYB       --------->At4g35610 -------ABI4(2)    ----------------->AGL1    --------->MYB59--------->MYB52(1)     <---------At4g35610   agcaccggtctgatcaaaattgccaacaccagtaggctgagaagggttaggcagagtgtattcaacggtagtgtactgtggatagagctcacaagggaca  1635400                                                                         <---------ANAC46                                                                         <---------ANAC58                                                                    =================================                                                                    ================HOX2a_HOX2a                                                                   ==================================                                                                   <------ZmHOX2a(2)                                                                   =================HOX2a_HOX2a                                                                  --------->AGP1                                                                  <---------AGP1                                                                  --------->ARR14(2)                                                                  <---------ARR14(2)                                                                  <---------ARR11(3)                                                                  --------->ARR11(3)                                                                  <-----------ARR10                                                                  --------->ARR14(3)                                                            <---------ARR14(2)                                                            --------->ARR14(2)                                                            --------->ARR11(3)                                                            --------->AGP1   <------ZmHOX2a(1)                                                       =============HOX2a_HOX2a                                                       ===================HOX2a_HOX2a                                                       <------ZmHOX2a(1) <---------ANAC58                                                       ====================HOX2a_HOX2a                                                      <----------ID1------>ZmHOX2a(2)        --------                                              --------->ANAC58    <---------ARR14(3)     --------->ANAC58                                              --------->ANAC58   <---------CCA1(2)       --------->ANAC58                                          --------->HSFB2a(2)=======================HOX2a_HOX2a                         <------ZmHOX2a(1)<---------HSFB2a(2)<------ZmHOX2a(2) <---------GLK1(1) xxxxxxxxxxxxxxxsmallRNA(s)              <---------LBD16   --------->At4g35610 --------->GLK1(1) <---   ttagtctcggacataacatggtagtgaggagggaagtggtttctctggaagcaaataggacagatccagatcttggcgaggaaatcaacacgagcaaaag  1635500                                                             <---------MYB52(1)                                                            --------->LBD16                                                           --------->LBD16                                                          <---------LBD16            --------->ANAC58                                                       --------->ARR14(2)            --------->ANAC46                                                       <---------ARR14(2)         <-------TEIL                                                      <----------TaMYB80 ------>ZmHOX2a(2)                                             --------->MYB46(3)   --------->MYB52(1) --------->ANAC58 ===HOX2a_HOX2a                            ----------->RAV1(1) <---------MYB46(3)--------->CCA1(2) <- ===HOX2a_HOX2a                  <------ZmHOX2a(1)    --------->GLK1(1) <------ZmHOX2a(2)  ---------- -->DOF2--------->At4g35610    --------->ALFIN1      ---------->TaMYB80--------->ARR14(2) ----------- ---ZmHOX2a(1)      <----------ID1   <---------KAN4(2)<---------GLK1(1)<---------ARR14(2)--------->At4g35610   gattaagagcagcggtacaaatgcgacaacgaagaggagcatattcaacagatgggatatcccggtggtaacggatcggagagatacaagcagcgacagg  1635600                                                 <---------SPL7                                              <-----------TGA1                                              <-----------HVH21                                             --------->ANAC58                                             --------->bZIP60(2)                        <---------ANAC58     --------->TGA1a                        --------->ANAC58                        <---------ANAC58     <---------O2                           --------->ANAC46                     <----------DOF2       <---------ALFIN1                         --------->ANAC58              <---------ANAC58        <---------HSFB2a(1)                    ------>ZmHOX2a(2)              <---------ANAC58        --------->HSFB2a(1)                    <-------TEIL          <---------ANAC46      ------>NtERF2--------->ANAC46               <------ZmHOX2a(2)    <---------ALFIN1 ==================================bZIP_DOF            --------->ARR14(2) -----ZmHOX2a(2) --------->REM1(1)  --------->MYB52(1)                     <---------ARR14(2) ->RAV1(1)<---------ANAC58  <---------ANAC58 --------->O2               <---------HSFB2a(2)     <---- >HVH21   <---------ANAC58  <---------ANAC58 --------->ANAC58           --------->HSFB2a(2)  --------   gatcacacacttgcttgcttcaactttggtgcgaggccaaacgttccacgtcatacgaactccatcgattccttctggatccatactcgccatctctgac  1635700                       <------------CBF                    --------->LBD16                  <-----------------AGL2                  <-----------------AGL3                  ----------------->AGL2                  ------>ZmHOX2a(2)                  <-----------------AG                  ----------------->AGL1                 --------->ARR14(1)                 <------ZmHOX2a(2)                 --------->CCA1(2)                <---------ARR14(2)                <---------ARR11(3)                --------->ARR11(1)                                 <---------PCF5                --------->ARR14(2)                              <---------At4g35610            ---------->DOF2                        --------->GLK1(2)      --------->At4g35610         ----------->GT1                    <----------DOF2     --------->LBD16       <---------TOE2(3)                <------MYB46(1)        <---------LBD16               --------       <---------TOE1(3)      ----------->GT1   <---------YAB1<---------LBD16      ---------->DOF2 -----bZIP60(2) --------->ARR11(3)      <------MYB83          <-----------RAV1(2)--------->YAB1 --->HVH21*TSS----------->ARR10        --------->MYB59----------->GT1   <-----------RAV1(2)  --------   atggtttttaagggtaaagatccgaaattggaatgaaaaatttggtctttgtgattctgtaaattcaggggacctcagaagaatcaaaagcagagacgaa  1635800                                                                                                 ----                                                                                            ---------            ------>ZmHOX2a(2)      <---------YAB1                                     <---------ZAT6           <------ZmHOX2a(2)    <---------AHL20(2)                                    ----------->GT1    ---------->DOF2          --------->ARR11(3)                         <-------TEIL <---------TOE2(3) ->ANAC58 <---------ARR11(3) <---------ARR11(3)                     <-------TEIL     <---------TOE1(3) ->ANAC58 --------->ARR11(3)<---------RVE1(1)               --------->YAB1    <----------DOF2--------   actgtggaaagggatctatctatgtgagagagattttatgagtagagagagtcgtctgtctctaataacatacatacatgcttttttagggttaaaaagt  1635900                                                                                    <---------ARR11(1)                                                                                    <---------ARR14(2)                                                                                    --------->ARR11(3)                                                                                    <---------ARR11(3)                                                                                    --------->ARR14(2)                                                                                   <---------CCA1(2)                                                                                   <---------ARR14(1)                                                                                   ------>MYB83                       --------->ICU4                                              ------>MYB46(1)                       <---------YAB1                                         >>>>>>>>>>WRKY43        --------->AHL20(1)                                                    <-----------GT1        --------->AHL20(2)                                                    >>>>>>>>>>WRKY26  ----------->GT1 ----------->GT1                                  <---------YAB1<---------MYB59  --- ----->MYB52(1) ---------->DOF2                          <---------ICU4       >>>>>>>>>>WRKY38<------ ->DOF2 <---------AHL20(2)                               --------->YAB1      --------->WRKY38(1) ---- ->DAG2 <---------AHL20(1)            <----------DOF2 --------->YAB1         --------->WRKY12--------   aacagagtaattaattgcaaaagttataatggattttgggttttttggcaactaattcatcatcaacttatgttaacaattgaccaaatcttctattaaa  1636000                                                                             <-----------HVH21                                                             --------->WOX13(1)                                                      <---------O2 <---------CCA1(2)                                                   <------ZmHOX2a(2)      <----------DOF2                                                  --------->ARR11(3)<---------ARR11(3)  --------->AHL20(2)                              <---------ARR11(3)--------->ARR11(3) ------>AHL20(2)                                 --------->At4g35610<---------ARR14(2) ---AHL20(2)                                     <---------At4g35610<---------ARR11(1) ----->AHL20(2)                                  --------->bZIP60(1)--------->ARR14(2) ->AHL20(2)                                      <---------bZIP60(1)<-----------ARR10     --------->ATHB12   taaaaaaaattcaaaatactgttttgtttttctcacattttagaatatgtgagatcacttggccaatccaaatcttctttgtcagagttgtttcattgaa  1636100                                                                                   --------->ANAC58                    --------->ATHB12                                               --------->ANAC58           --------->AHL20(2)                                                      --------->ANAC46           <---------AHL20(2)                                                    ---------->DOF2           --------->YAB1                                                      <---------YAB1        <---------ICU4                                                       --------->YAB1       <---------AHL20(2)                                                   <---------ATHB12        <       <---------ATHB51                                              <---------ARR14(2)            --       --------->ICU4 <---------WOX13(1)                             --------->ARR14(2)  <---------DAG2       --------->AHL20(2)  ------>ZmHOX2a(2)                        <---------GLK1(1)    <----------DOF2     --------->YAB1<---------YAB1      <----------DOF2   ----------->GT1    --------->ICU4   --------   aaaacaaaaataattaaaactgtgattgatcgtatatttgcctttatctgtgtattagacagaaaaaaacatatcccaattatcaaagcaactttatgta  1636200  Previous    Next  AGI:  At1g05520.1    Description:  transport protein, putative. similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT4G14160.2); similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT4G14160.1); similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT3G23660.1); similar to At1g05520/T25N20_16 [Oryza sativa (japonica cultivar-group)] (GB:AAX96396.1); similar to hypothetical protein OsI_034747 [Oryza sativa (indica cultivar-group)] (GB:EAY80788.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66988.1); contains InterPro domain Sec23/Sec24 trunk region; (InterPro:IPR006896); contains InterPro domain Zinc finger, Sec23/S Range:  from: 1630899    to: 1635710    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version