Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100     --------->ALFIN1                                                                     <-----------GT1 <---------ANAC46                    --------->TOE1(3)                   --------->TOE1(3) -------->HVH21                      --------->TOE2(3)                   --------->TOE2(3) ------>RAV1(2)           <---------YAB1                                --------->At4g35610 -----At4g35610         --------->YAB1                               ------>ZmHOX2a(1) <-------TEIL ---->At4g35610     <---------AHL20(2)                        <---------YAB1          --------->CCA1(2) ->TEIL        <---------ATHB12     --------->At4g35610     --------->YAB1           --------->ARR14(2) >RAV1(2)    --------->WOX13(1)  ------>ZmHOX2a(1)      <---------AHL20(2)           <---------ARR14(2)   ctgaagtggatggctcaatcaatttatcgtgattcctaagcttaatcggtagaatcaatttatcgtgattcctaagcttaatcggaagattcacaacttc  1629000                                                                                  --------->ANAC58                                                                                  --------->ANAC58                                                                                 <---------LBD16                                                                             --------->ZAT14                                                                             <---------ZAT18                                                                        --------->At4g35610                                                                        --------->ZAT2                        --------->MYB52(1)                             --------->GLK1(2)                    <-----------HVH21                                 <---------GLK1(2)                   <---------ANAC46                                <---------HSFB2a(2)   ------->TEIL    <---------ANAC58                       <---------AtLEC2   <---------ZAT14       --   <-------TEIL    <---------ANAC58          ---------->DOF2       <-----------RAV1(2)---------->TaMYB80   gaatgtacatgttgtctagtagcgtcaaacggatgtgttttgtcaaacaaagacgagtctgcatgtagcccagaagctgtggactcggaatatgagtttt  1629100                                                                                  <-------TEIL      <                                                                               <---------ANAC46     <                                                                               <---------ANAC58     -                                                                           <----------DOF2          <                                                                          <---------ICU4            -                                                               --------->DAG2  <---------ANAC58     -                                                             --------->ICU4--------------------->WRI1                                                      --------->At4g35610 ===========================HOX2a_HOX2a                                                      <---------At4g35610 ------>ZmHOX2a(2)        <- <----------DOF2                                    <-----------RAV1(2) --------->ARR11(3)         <- ---->ZmHOX2a(1)                  ------->TEIL   --------->At4g35610    <---------ARR11(3)    ------>ZmHOX2a(1)   cctctttttttctgaaaaccctagacaatactcgtgtacgtttgcctcataagctcagatgtcataaggggtttgatctttgcgtgcatcacaatccttc  1629200           <----------DOF2          <---------DAG2       <-----------GT1                  <-----------GT1   --------->AHL20(2)                 ------->TEIL   <---------AHL20(2)              --------->ANAC58                                     ============= ---------AHL20(1)                 --------->ANAC46                                    ============== --------ATHB1                     <---------ANAC55(2)                             --------->At4g35610 -------->AHL20(2)                 --------->ANAC55(1)                        <---------ICU4 ---------ICU4         --------->ARR11(3)                                    --------->ICU4 -------->YAB1<-----------GT1   <---------REM1(2)                            <---------YAB1 -------->ATHB51       <---------ARR11(3)     --------->ARR14(2)           --------->YAB1   --------- --------ATHB51  --------->TOE1(3) --------->ANAC58---------->ID1         <---------YAB1------>ZmHOX2a(2) --------ATHB12  --------->TOE2(3) --------->ANAC55(2)               <-----------GT1   <------ZmHOX2a(2)   aataattttttaccttttaccctaaaatctcgtctacacgtatcaccatatttgtcttcaccaagtttgtttcactatcataatcagcgatctcttgaca  1629300                            ------>ZmHOX2a(1)     --------->ANAC58                           --------->TOE2(3)      --------->ANAC58                      <---------YAB1              --------->AtLEC2                  <---------ANAC58                --------->ANAC46                               >>>>                  <---------ANAC46           --------->ANAC58                      ------->MYC3 -----                  <---------ANAC58           --------->ANAC58        ------------>CBF<-----------HVH21               ---------->ID1                --------->ANAC46   <---------ALFIN1   <-------MYC3 -----             <-----------RAV1(1)           =================================================bZIP_DOF ==================HOX2a_HOX2a             ---------->DOF2   ----------->HVH21    --------->O2  ----- ==================HOX2a_HOX2a      --------->ANAC58        <-----------HVH21     --------->TGA1a>>>> -->HVH21   ------>ZmHOX2a(1)       --------->ANAC58  <---------ALFIN1            <---------O2  -----   catattgactagtccttgttgcttattatcctcaagtgaagccaaataagccacgcacactcggtgacaccttcaatgtttgccatgtgtcatagtccat  1629400        --------->bZIP60(2)      <---------ALFIN1 >>>>>>ABI3 ---->ANAC46                                 *TSS  <---------YAB1 ---->AtLEC2   --------->AHL20(2)           <---------CCA1(2) ---->ANAC58   <---------AHL20(2)         --------->DEAR3(1) >>>>>>FUS3    <---------AHL20(1)      <---------ALFIN1                      --------->GLK1(2) ---->ANAC58   --------->AHL20(1)     --------->MYB46(3)<-----------GT1  --------->YAB1           ---   gcaaatgcccacttcattttattaagacgagagctatacaaacaccgtctcttcttattcacttgctgctagttataagaatcagacagaagttgcagag  1629500                                                                    <-----------RAV1(2)                                                                    <---------HSFB2a(2)                                                                    <---------LBD16                <------MYB83                                   <---------HSFB2a(1)                 --                <------MYB46(1)                                --------->HSFB2a(1)          ---------                ----------->GT1                 --------->AtMYB61   --------->HSFB2a(2)   --------->ARR14(2)            --------->ATHB12                   <-----------------AGL1                     <---------ARR14(2)           <---------AHL20(2)                  ----------------->AGL2         --------->MYB52(1)   <-          <---------WOX13(1)                   <-----------------AGL3  <------ZmHOX2a(1)  <---------GLK1(2)       --------->AHL20(2)                   --------->MYB46(3) --------->HSFC1(2)       --------->LBD16       <---------AHL20(2)                 <-----------GT1      <---------HSFC1(2)     <---------LBD16 ------->DOF2 <---------WOX13(1)  <---------At4g35610    ------->TEIL--------->LBD16 --------->MYB52(1)   aaaagagaattaattgattggtgtaatggagaaggcagttcatttatccaccaaaaatggacccaaggttccaggagagccaacgaagaccggaacctcc  1629600                  <---------At4g35610                  --------->At4g35610              <-----------HVH21            --------->ZAT2            --------->At4g35610            <---------ZAT2            <---------At4g35610       --------->TGA1a       =============================bZIP_DOF       --------->ANAC58       --------->ANAC58       --------->ANAC46                                 ------>MYB46(1)       --------->O2    --------->SPL7                   ------>MYB83  --------->SPL7       --------->ANAC55(1)  --------->HSFC1(2)         ----------->RAV1(1) --------->At4g35610       --------->bZIP60(2)  <---------HSFC1(2)        --------->AtMYB61--------->ANAC58    <---------REM1(2)<---------SPL7                  --------->MYB46(3)--------->ANAC58  ----------->HVH21 --------->RAP2.6(2)         <---------ARR14(2)  <---------SPL7 <---------WOX13(1)--------------->AtSPL3       --------->ARR14(2)<---------------AtSPL3 ------->ATHB12 <-----------RAV1(2)            ------>MYB83       --------->LBD16 >MYB46(3)  <------NtERF2---------->DOF2       ------>MYB46(1)   <---------ANAC46  ----------->GT1 --------MYB46(3)------------------>SPL14 <-----------GT1 <---------ARR11(3) --------->HSFB2a(2)<----   atggttgacacggcagcttcagccgtacaaagcttcgctccgattaaccaaatccaccaacatctctgcgcgtacgcttctgaaattgttaatcttctct  1629700                                                                                                  ---                                                                            <---------ALFIN1     <---                                                                         <---------ALFIN1       <----                                                           --------->ZAT6--------->REM1(1)      -----                                                         --------->MYB52(1)--------->ANAC46     -----                 --------->ANAC58  ------>ZmHOX2a(2)  <---------ICU4     --------->ANAC46       -----         --------->TOE2(3)       <---------ARR14(2)   --------->YAB1    ------>MYB46(1)         <----         <----------DOF2        <------ZmHOX2a(1)    <---------YAB1     ------>MYB83  <---------ANAC46    <---------AHL20(2) ---------->DOF2           <---------KAN4(2)      -------->P   ---------->ID1 < ------DOF2      --------->ANAC58--------->ARR14(2)--------->YAB1     --------->AtMYB61         <----   tttcattttatctttaaacaagaaataaagaagaggatcggaagaatgagggataatcataacagtataaaacctacaccacattttttcgtttaataga  1629800                                                                                                   --                                                                                                  <--                                                                                                  <--                                                         ----------->GT1                          ---                                                    --------->WOX13(1)                            ---                                                 --------->TOE2(3)                                <--     <---------GLK1(2)                          <---------ANAC55(1)                               --- --->ZmHOX2a(2)                                 --------->ANAC55(2)                              ---- ---ZmHOX2a(2)                                  <---------ANAC55(2)                              ---- -----ARR11(3)                                  --------->ANAC58                                 <--- ---->ARR14(2)                                  --------->ANAC58                                 <--- ---->ARR11(3)                                  <---------ANAC46                                 <--- ---->AGP1                                --------->ARR11(3)                                     ---- -----AGP1                                <---------ARR11(3)                                    ----- -----------HVH21      --------->AHL20(2)<---------GLK1(1)      --------->YAB1                 <----- -----ARR14(2)         <---------AHL20(2)<---------CCA1(2)   --------->WOX13(1)   <---------AHL20(2)-   tctgtcaaattcttgtagtttagatttaaaaaacattgtattgatatcttacgtaaatcaagttaatcaaattttcttgaatttttaatcgatgtgaaca  1629900  Previous    Next  AGI:  At1g05500.1    Description:  ATSYTE/NTMC2T2.1/NTMC2TYPE2.1/SYTE. similar to ATSYTD/NTMC2T2.2/NTMC2TYPE2.2/SYTD [Arabidopsis thaliana] (TAIR:AT5G11100.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69290.1); similar to unknown [Populus trichocarpa] (GB:ABK94033.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN84059.1); contains InterPro domain C2 calcium-dependent membrane targeting (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973) Range:  from: 1624954    to: 1629223    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g05510.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G31985.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45247.1); contains InterPro domain Protein of unknown function DUF1264 (InterPro:IPR010686) Range:  from: 1629445    to: 1630862    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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