Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 ------                                                                                               ------                                                                                             ========                                                                                            <--------                                                                   <---------ZAT18        <---------At4g35610                                                                   <-------TEIL           --------->At4g35610                                                                   --------->ZAT18        --------->LBD16                                                              --------------------->WRI1--------->MYB46(3)                                                              ------->GAMYB            ------>MYB46(1)                                                             --------->MYB46(3)      <---------ALFIN1                                                             <---------ATHB12        --------->AtMYB61                                                            ------>MYB46(1)         --------->MYB46(3)                                                            -------->P           --------->MYB46(3)                                                            ------>MYB83        --------->CCA1(2)                                                           --------->MYB55(1)   <------ZmHOX2a(2)                                                          <---------MYB111(2)  <---------ARR11(3)                                                          <---------MYB46(2)   --------->AGP1<-------GAMYB                                                    --------------->AtSPL3     --------->ARR11(3)                                             <-------TEIL --------->MYB46(3)   <---------ARR14(2)                                       <----------DOF2    <---------MYB111(1)  --------->ARR14(2)             ------>MYB83             --------->TOE2(3)   <---------MYB59XXXXXXXXXXXXXXXXXXXX>MIR842- -----DOF2   ------>MYB46(1)    <------ZmHOX2a(1)  --------->At4g35610--------->ANAC46 ------>MYB83 -   tgcaaacttagaaccaaatgaaatcgaagaacgaggattacctttgatacatgagcagtaccaaccaagtacacatcgcaagatccaccatccgctgttg  1534000      --------->TGA2(2)                                                          --------->YAB1     <-----------HVH21                                                          --------->ICU4    --------->O2                                                             <------NtERF2    ============================bZIP_DOF                                    <---------ATERF1(1)    --------->ANAC46                                                       --------->DREB2C(2)    --------->ANAC58                                                       --------->RRTF1(2)    =============================================MYC_MYB                   --------->DEAR3(1)    --------->ANAC58                                                       --------->RRTF1(3)    <---------O2                                                           --------->RAP2.3(3)      <    --------->bZIP60(2)                                                    --------->RAP2.3(2)     --    <---------TGA1a                                                        --------->ATERF1(2)  -----    --------->TGA1a                              <----------DOF2           <---------ATERF1(2)  -----   <---------TOE1(2)                          <---------ALFIN1             --------->ANAC46     -----   --------->SPL7                         --------->At4g35610              --------->RAP2.6(2)  -----  <---------ALFIN1                        <---------At4g35610             --------->RAP2.3(1)   ----- --->WRKY12                             <--------P--------->ZAT14         --------->ERF1      <------ --->WRKY38(1) --------->ANAC46        <---------MYB52(1)                <---------ATERF1(1) <------- =============MYC_MYB<---------DAG2   --------->LBD16                   --------->ANAC46  --------->ANAC46 -MYB46(3)   --------->YAB1    --------->ARR14(2)<---------DAG2     --------->ZAT6 <---------YAB1---- -------->ANAC58     <----------DOF2<---------LBD16           --------->At4g35610<---------ICU4------ -------->ANAC58  <---------ALFIN1 ------>ZmHOX2a(1)     --------->ATERF1(1)------>NtERF2--------->At4g35610   actcgcacgtcagaatcacaacacttttcgccaattcctccggtagctccactttagtagcctccgatgaacactcgccgccatcatcatccgctccacc  1534100         <---------At4g35610        --------->DEAR3(1)        --------->RAP2.6(2)        --------->RAP2.3(2)        --------->RRTF1(3)       --------->ATERF1(1)       --------->RRTF1(1)       --------->RAP2.3(1)       <------NtERF2      --------->ABI4(1)      ------>NtERF2      <---------RAP2.3(1)      <---------ATERF1(1)     --------->ANAC46     --------->RAP2.3(2)     --------->RAP2.3(3)     --------->ATERF1(2)     <---------DEAR3(1)     --------->DEAR3(1)     <---------ATERF1(2)    --------->ATERF1(1)    --------->RAP2.3(1)    --------->DEAR4(2)    --------->ORA47(2)    --------->ERF1   <---------ATERF1(1)                               <---------ANAC46  --------->DEAR3(1)                               <----------DOF2 ---------ATERF1(1)                              ------>NtERF2 ------->DEAR3(1)                               --------->DEAR3(1) ---->DREB2C(2)                                 --------->RAP2.3(2) ---->DEAR3(1)             ------>NtERF2       --------->RAP2.3(1) ---->RAP2.6(2)           <---------ARR14(2)  <---------ATERF1(1) -->GAMYB--------->At4g35610                  ------>NtERF2 ---->ANAC46         --------->ARR14(2)       --------->LBD16 ---ATERF1(1)        --------->GLK1(2)       --------->DEAR3(1)                                  ---- --ALFIN1------>NtERF2    --------->ARR14(2) <---------ALFIN1                             <---------- -->NtERF2          <---------GLK1(2)        --------->ANAC46              <---------ALFIN1    <----- --->MYB46(3)    --------->ANAC46          ------>ZmHOX2a(1)          ------>ZmHOX2a(1)  <-----------RAV1(1)   gccatcgccgccgctaaacacagaatcggagcctctaaattcttcctccgccgcttcgtcgagcagttcatccttctccacattaactatgctgtcgctt  1534200                                                                                        <------NtERF2                   <---------STY1(1)                                                    --------->At4g35610                   --------->STY1(1)                                                   <---------DEAR3(2)               <------MYB46(1)                                            <---------DEAR3(1)               <------MYB83                                        <------NtERF2       <---------RAP2.3(1)             <--------P                                           ------>NtERF2        ------>NtERF2           <---------DEAR3(2)                                    --------->ARR14(2)   <---------DEAR3(1)          --------->ATERF1(2)                                    <---------ARR14(2)  --------->ATERF1(1)    --------->GLK1(1)                                           --------->ATERF1(1)<---------ANAC58    <---------GLK1(1)      <---------------------WRI1          ------>NtERF2       <---------ANAC58   --------->ARR11(3)    <---------WRKY12                      --------->LBD16 <-------GAMYB   ------   <---------ARR11(3)  <-----------HVH21                     <---------LBD16  <---------MYB46(3)<---- ------>DOF2<---------MYB52(1)                            --------->MYB46(3)<------NtERF2 <----------DOF2 -HVH21  <---------LBD16 <---------WRKY38(1)             ------->TEIL--------->LBD16<-----------HVH21 -----DOF2<---------ATERF1(2)                ------>ZmHOX2a(1) <---------ATERF1(1) <---------ANAC46   aaagagatatcgccggtaggcctagggtcatcgatgtgaacgaagtcctctccagagtgaacctccggctccgaagacggcgattgcgtcggctctatcg  1534300                                                                                   --------->YAB1                                                                            --------->ANAC55(1)                                                                            --------->ANAC46                                                                            --------->ANAC55(2)                                                         --------->ARR11(3) --------->ANAC58                                                   <---------------------WRI1      ----------->GT1                                                 <---------DEAR3(1)         --------->AtLEC2                                          --------->GLK1(2)                 --------->ANAC58                                 --------->ICU4 --------->SPL7           <------ZmHOX2a(2)    -------                        --------->ARR14(2)<---------ARR14(2)       --------->CCA1(2)      ---------->DOF2                        <---------ARR14(2)--------->ARR14(2)      <---------ARR14(2)    --------->ANAC58 --->YAB1  <------ZmHOX2a(1)----------->GT1 <---------LBD16---------->DOF2  <---------ANAC55(2) -------TGA1   --------->ICU4   <---------YAB1--------->LBD16     --------->ARR14(2)    --------->ANAC58   tcatcgaaatcgaggagatgatggcagatttagtaatattgaagaatccggagggcgaagataaagaagatagggatcacgcaaatggtaacgaaagaaa  1534400                                                                              <---------AHL20(2)                                                                              --------->AHL20(2)                                                                             <---------AHL20(1)                  --------->MYB52(1)                    --------->ANAC58     <---------AHL20(2)                 --------->MYB46(3)                     --------->ANAC58 <---------AHL20(2)          <---------ARR11(3)                      <---------TOE2(3)      --------->AHL20(2)         <------MYB46(1)                      <---------At4g35610 --------->ZAT6           <---------         <------MYB83      ---------->DOF2    --------->ZAT2   <---------AHL20(2)          <---------ICU4         ----------->GT1 <------NtERF2        --------->At4g35610 <-----------GT1    --------->TOE2(3)    --------->ANAC58    ------>NtERF2         <---------ZAT2   <---------ICU4--------->AHL20(2)    --------->ANAC58 ------->GAMYB          <---------ALFIN1   --------->AHL20(2)    --------->TOE1(3) --->DOF2*TSS  <-----------GT1             --------->LBD16    --------->AHL20(2)  <-----------GT1 ---   gaaggcaaggaaggtattaacaacggtggcaaagtcgtctaatcccccagctaatgttacgctaattaatactacttaattaatttaccttaatcacttc  1534500                                                  <------NtERF2                                    --------->GLK1(1)                 <---------DAG2    <---------ARR14(2)    <----------DOF2                --------->ARR14(2)        <-----------HVH21   <---------ANAC58            <---------LBD16    --------->LBD16   <---------ANAC58          <-----------GT1     --------->ANAC58    --------->AHL20(2)          <--- --GT1 ------------>CBF ----------->GT1          --------->ANAC58    --------->YAB1       <---------- --->ZmHOX2a(1)  <----------DOF2 --------->LBD16<---------LBD16      <---------AHL20(2) <---------YAB1   ctattactttccaatttcgctttaactggtttaaccggatttgtatttggcccgcatcaatacggtcgcatttatatttcaaatagcattattttcggtt  1534600                                                                        --------->ANAC58                                                                        --------->ANAC58                                                               >>>>>>>>>ARR2       --------->DAG2                                                               >>>>>>>>>ARR1      ---------->DOF2   -                                                      <---------ANAC58  --------->ANAC46           --           <<<<<<<<<TBF1                              <---------ANAC46 --------->ZAT18         ------ --------GT1                             --------->ALFIN1    <---------YAB1    --------->YAB1-------- -GT1  ---------->ID1          --------->AHL20(2)     <---------ANAC58 <---------ZAT18       xxxxxxxx   tactattttgttcttcttcattttttgaacaaaataaacaagagtgtgtgaatgtgacttgatacgattgtagcacgctaatcgtaaagggaatcaactg  1534700                                <---------ANAC58                                <---------ANAC46                                <---------ANAC58                        <---------GLK1(2)                        --------->ARR14(2)                 --------->ARR11(3)                                                                 <                 <---------ARR11(3)                                                 <---------REM1(1)                <---------GLK1(1)                        --------->TOE2(3)       --------->ICU4     <                <---------RVE1(1)                    --------->YAB1            ---------->DOF2      - -------->DAG2  <---------CCA1(1)                   <---------YAB1        ---------->DOF2           - -------->DOF2  --------->GLK1(1)                  <-----------GT1     --------->TOE2(3)            - ->GAMYB       --------->ARR11(3)   <---------YAB1--------->YAB1     <---------ARR11(3)             < ->At4g35610   <---------ARR11(3)--------------->AGL15 <---------YAB1--------->ARR11(3)       ------- xxxxxxxx>smallRNA(i)  <------ZmHOX2a(1)   ----------->GT1          <---------CCA1(2)    --------->MYB46(3)   caaaagtgagcgactgagatatctaggattcttagcttgtaatagaagtaaattatcattcttagtttttatatcttaaagtaaagatgtaaccaataga  1534800                          <------MYB46(1)                          <------MYB83                         --------->MYB111(2)                         --------->MYB46(2)                         --------->MYB59     <---------AHL20(2)  --------->MYB55(2)    --------->AHL20(2)   --------->MYB111(1) ---------AHL20(2)       <---------MYB46(3)                                                 <-------TEIL ---------AHL20(1)      <---------MYB55(1)                                              <---------AHL20(1) -------->AHL20(1)      <--------P                                                      --------->AHL20(1) -------->AHL20(2)    <------MYB83                                                     --------->AHL20(2) -------->ARR11(3)    <------MYB46(1)                                          --------->ANAC46 ---------ARR11(3)   --------->MYB59       --------->YAB1                    <---------ALFIN1       - -->YAB1     ----------->GT1    <---------MYB59                             <-------TEIL<---------AHL20(2)   aatatattaaatctagggtgaatttggtaggtagcctaattttaagtataatgtcattttcatcaatttcagtgaaggtccaccctagattatattcatg  1534900  Previous    Next  AGI:  At1g05270.1    Description:  TraB family protein. similar to TraB family protein [Arabidopsis thaliana] (TAIR:AT2G32340.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24159.1); contains InterPro domain Pheromone shutdown-related, TraB (InterPro:IPR002816) Range:  from: 1531640    to: 1534409    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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