Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            <---------ATHB12              <----------DOF2                  <---------ARR11(3)              <---------WOX13(1)               <---------ARR11(1)            --------->ATHB12   <-----------GT1 --------->ARR14(2)                                  >>         <---------ANAC58------>MYB46(1)      <---------CCA1(2)                                 -----   <---------YAB1      <---------MYB59   <-----------GT1      <---------------AGL15            <----- ----GT1 <---------ANAC58------>MYB83 <----------DOF2   <----------DOF2            <---------AHL20(2)   aacttactatagcttgatttatggaccaaacattcaccatcttttaccatatctaatacttttgatatttttagtatcagagtatatttttgatattttg  1529400                                  <---------HSFB2a(2)                                  --------->HSFB2a(2)                           <---------ANAC58                           --------->ANAC55(2)                           <---------ANAC58     <---------AHL20(1)    --------->O2     --------->AHL20(1)    <---------ANAC46                                       <---------------AGL15   <---------AHL20(1)      <---------ANAC55(2)                                --------->AHL20(2)-----   --------->AHL20(1)      <---------ANAC55(1)                           <------ZmHOX2a(1)      <---- >>>>>>>GT-1       --------->ARR14(2)                           --------------->AGL15      ---------- ------>GT1        <---------GLK1(2)                         <-----------GT1  <---------AHL20(2)----- ----TOE2(3)       <---------ARR14(2)           <-----------GT1 ==================================MADS_MADS   gttaatatatattagaaaacaaattcgctacgtgttttagaacatacaaattacaaattagttttacaaattacaggaaaataaatataagtggaaagac  1529500          <-----------GT1     <---------AHL20(2)     --------->AHL20(2)   <----------DOF2   --------->TOE2(3)                                        --------->TOE2(3) ---->ANAC58 <----------DOF2                             <-----------GT1                          --- -----ANAC55(2)                                       ----------->GT1  --------->TOE2(3)  <---------- >DOF2   --------->AHL20(2)                         <---------ANAC46  --------->ATHB12<---------AHL20(2) ---->ANAC58 <---------DAG2                   --------->ATHB12 <---------ARR11(3)     --------->AHL20(2)   gtaaactttaattaacttttttttataaaaaaactcttccaaattgcctcattgaagtgtaacattatctcttcattagtaagagtattaaaaaaccatt  1529600                                                                                        <---------At4g35610                                                                                        --------->At4g35610                                                                                   --------->MYB46(2)                                                                                   --------->MYB52(2)                                            <---------ICU4                         --------->MYB111(1)                                        --------->ICU4                          ------------>MYB.PH3(2)           --------->YAB1              <------NtERF2                          ------->MYC3    --------->YAB1                    <---------At4g35610                     <-------MYC2    -------->HAHB4                   <---------DEAR3(1)                   <---------ZAT18    <---------ICU4                   <---------ANAC46                     --------->ZAT18           -   --------->ICU4                 <-----------RAV1(1)         ----------->GT1 <-------MYC4        ---   <---------ATHB51             <-----------RAV1(1)          --------->DAG2   ------->MYC2        --- -------->GT1 <---------ICU4<---------YAB1 --------->ICU4   ---------->DOF2   <-------MYC3        <-- -GT1 <---------YAB1        <---------AHL20(2)      ----------->GT1  ---------->DOF2 <---------MYB52(1)   ttgtaattatgaataaaaatttctcaaatttttattgtggcgctgattatgagccagaaaaataaagtagaaaaagagcacatgttagttagcttagatg  1529700                <---------ATHB12               ------>MYB46(1)             <---------MYB46(2)             <---------MYB111(2)                                   ----------->RAV1(1)  ------>MYB46(1)  --------->ANAC58                               *TSS  ------>MYB83 ------>MYB83                    <---------DOF5.7(2)--------->ANAC46 <---------ALFIN1  --------->AtLEC2          --------->DOF5.7(2)--------->ANAC58 -------->MYB46(3) --------->ANAC58         --------->YAB1      --------->ANAC46 ---->TEIL   <---------MYB59              <---------TOE2(2)     --------->ANAC58 ------>PCF2 <---------MYB111(1)        --------->TOE2(2)  --------->ANAC46       --------->MYB52(1) -------TCP20--------->MYB46(3)  ----------->TBP     ------------>CBF        ------>ZmHOX2a(1)   gacccacttctactaccaaacatgcaaactcttctatataaacctatgttaacgtctcaatacatcacacaacataatcctcccaaacagagagagtctc  1529800                   <---------TOE2(3)                  ---------->DOF2                 <---------AHL20(2)                 --------->AHL20(2)                                        <-----------RAV1(1)          ------>MYB46(1)                                           <---------ANAC46          ------>MYB83                                          <---------ANAC58         ----------->RAV1(1)   <---------WOX13(1)               <---------ANAC46      <------ZmHOX2a(2)       --------->MYB46(3)     <---------ANAC58               <----------DOF2         --------->ARR14(2)      >>>>>>>>>>MYB80         <---------ANAC46           <----------DOF2   --------->ATHB12   --------->AHL20(2)         <---------ANAC58 <----------DOF2  <---------ANAC58     <---------ARR14(2)   aaaaattaaaccaacaaatttaaagatgaattgcttgatagctatagctctttcagtctctttctttcttgtgggaattgttggaccgatccaagctcaa  1529900                                                    <---------ARR11(3)                                                    <---------GLK1(2)------->MYC3               -----                                                    --------->ARR11(3)                          <----                                                    --------->ARR14(3)                       <-------                             ------>ZmHOX2a(1)      <---------ARR14(3)                       <-------       ------->TEIL       ---------->ID1  <---------GLK1(2)          <-------MYC3            --------  <---------At4g35610 <---------ANAC58  --------->ICU4              --------->O2            <--------  --------->At4g35610 <---------ANAC58---------->DOF2          --------->ANAC46    ------>ZmHOX2a(1)   ttgcagatgaatttctatgccaattcttgtcctaatgctgaaaagattgttcaagattttgtttcaaaccacgtttctaatgctccttctcttgctgctg  1530000                                                                                            <--------                                                                                       --------->HSFC1(2)                                                                                       --------->KAN4(1)                                                                                       <---------HSFC1(2)                                                                           --------->AHL20(2)                                                                         --------------->AGL15     --                                                                         <---------------AGL15   <--- ---->At4g35610                                                          <----------DOF2--------->KAN4(2) -----At4g35610                                                  <----------DOF2       <---------KAN4(1) --ZAT2                                                        ---------->ID1          <---------HSFB2a(1) --At4g35610       ----------->HVH21          <----------DOF2 <-----------GT1          --------->HSFB2a(1) ->At4g35610     <---------AtLEC2    <---------ZAT14      <------------------------ANAC81--------->GLK1(2) ---RAV1(1) ------->TEIL             --------->ZAT14   <----------DOF2<-----------GT1 <---------KAN4(2)   ctctcattagaatgcatttccatgactgttttgtccgagtaaactcttcttttccctctttttttttctttttttctttatatagtggaacattctgaat  1530100                                                                                    --------->ANAC58                                                                                    --------->ANAC58                                                                                 <---------ARR14(2)                                                                                 --------->ARR14(2)                             <-------TEIL                                  <-----------TGA1     -----                      --------->GLK1(1)                                    <-----------HVH21    -----  --------->ANAC58   --------->ARR14(2)                      <---------ANAC58   <------ZmHOX2a(1)  --------->ANAC58   <---------ARR14(2)                <------ZmHOX2a(2)  --------->ANAC46      -----  --------->ANAC46<---------ANAC46                     ================================HOX2a_HOX2a <- -YAB1      --------->AHL20(2)              <-------GAMYB    <---------ANAC58<-----------RAV1(2)<---- ------->TOE1(2)--------->MYB52(1) ------->TEIL    <---------WOX13(1)     --------->bZIP60(2)   ----- ------ICU4 <---------AHL20(2)     <-------TEIL <---------YAB1       --------->ANAC46         -------   aactacgaaactaattaatgacggatatatatacatgtacatgtagggttgtgatggatcagtgcttataaactcaacgtcaggaaacgcagagagagac  1530200           ------>MYB46(1)           --------->MYB52(1)          --------->MYB55(1)     ------>ZmHOX2a(1) ---->ANAC46                                                <---------At4g35610 ---->ANAC58                                --------->AHL20(2) ---->O2 <---------MYB46(2)           --------->ANAC58      --------->At4g35610                 <---- --------ATERF1(1)                    --------->ANAC58<---------ANAC58                        <------ -----O2 <---------MYB59      <----------DOF2<---------AHL20(2)                        -------------- ---->ANAC58         <---------TOE1(2)--------->ANAC46<---------ANAC58<---------LBD16  <---------At4g35610 -->CCA1(2)------>MYB83 --------->ALFIN1    <---------AHL20(2)       <---------ANAC46 <---------ANAC46   gcgactcctaacctaacggttcgagggtttggcttcatcgacgcaattaaatctgtgcttgaagctcaatgccctggaattgtctcttgcgctgatatta  1530300  Previous    Next  AGI:  At1g05260.1    Description:  RCI3 (RARE COLD INDUCIBLE GENE 3); peroxidase. Identical to Peroxidase 3 precursor (PER3) [Arabidopsis Thaliana] (GB:O23044); similar to peroxidase 30 (PER30) (P30) (PRXR9) [Arabidopsis thaliana] (TAIR:AT3G21770.1); similar to CBRCI35 [Capsella bursa-pastoris] (GB:AAT72298.1); contains InterPro domain Plant peroxidase; (InterPro:IPR000823); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016) Range:  from: 1529766    to: 1531438    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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