Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       <------ZmHOX2a(1)                                                                                   <---------TOE2(3)                                                                        <---------TOE2(3)                                                                        <---------TOE1(3)                                                             <----------ID1<---------MYB52(1)                                 >>>>>>>>>RAP2.2       <---------MYB52(1) --------->TOE2(3)         ----------->GT1       <---------ARR11(3)      <---------YAB1  <---------DOF5.7(2)       ---------->DOF2    --------->CCA1(2)         <-----------------AGL3--------->TOE1(3)     --------->ANAC58    --------->ARR14(2)       --------->GLK1(2)    --------->MYB52(1)     --------->ANAC58    <---------ARR11(3)   --------->ANAC46       --------->ARR11(3) <-----------HVH21  -------->P<---------CCA1(2)  <---------GLK1(2)  --------->YAB1 <---------TOE1(3)   acatgtcaagaaagtaaaactctaccagatatatatctaaaccaatacacagaaactgttattggaacaaagataacgttagattaaggaagagaaacat  1503400                                                      --------------------->WRI1                                                   <-----------GT1                                               <----------DOF2                                               <---------DAG2     --------->LBD16                                        <---------ARR14(2)       <---------ANAC46                                        --------->GLK1(2)       <---------LBD16                  <---------AtLEC2      --------->ARR14(2)    --------->ARR14(2)        <----------DOF2                <---------GLK1(2)      <---------ARR14(2)     <---------ARR11(3)             <---------HSFB2a(2)      --------->GLK1(1)  <---------HSFB2a(2)               --------->HSFB2a(2)     ----------->ARR10               ---------  --------->HSFB2a(2)       <-----------GT1 ------>ZmHOX2a(1)<---------GLK1(1)             --------->AHL20(2)   tcttgtagaactttcagtttccatggctaaaaacccctctagaatcctgctttttacacagtgagttccgcataacacattcaaattcccaaaataaaaa  1503500                                                          <-----------GT1                                                       --------->YAB1            <---------YAB1                                                     --------->AHL20(2)       ------>ZmHOX2a(1)                                                 ----------->GT1             --------->TOE2(3)                                                ----------->GT1              <---------ANAC46                                              ---------->DOF2             --------->GLK1(2)  <-------TEIL                                           <---------AHL20(2)            <---------GLK1(2)<---------ATERF1(1) >YAB1                       <---------ICU4--------->AHL20(2)      ---------->DOF2       <---------DEAR3(1)   tccacaatttcaagagtccataaccaattcaacattgccatcgatttaaaaagataaaaataacccattcaaagagattccttatacttgggaggctcat  1503600                                              --------->ANAC58                                              --------->ANAC46                                     <-                                              --------->ANAC58                                     --                                      ---------->DOF2                                             ---              --------->ARR11(3)   --------->ANAC58                                          --------              <---------ARR11(3)   --------->ANAC58    --------->MYB52(1)     <---------ANAC46   ----              <---------GLK1(2)  --------------->AGL15<---------STY1(1)    <---------TOE2(3)---------   gaacacagtttatagagatttttgagtagaaaatgccaagtaaagaaaacgaaaccctagcggaatgaagaagctctatggtttgtagtatatgaaaagt  1503700                                                                                ---------------------   <-------GAMYB                                                      --------->HSFB2a(2) --------LBD16                            --------->CCA1(2)           <-----------RAV1(2) ------->TOE1(2)                       ----------->ARR10              <---------HSFB2a(2) -------->RAV1(2)                  --------->YAB1                 --------->At4g35610 ->DAG2                     --------->ANAC58          --------->At4g35610      <------ZmHOX2a(1) --->TEIL --------->ICU4    --------->ANAC58          <---------At4g35610   <------ZmHOX2a(1) ->DOF2 ---------->DOF2   <------ZmHOX2a(1)    <---------YAB1     <---------At4g35610      >>>>>>>>>TBF1   acctgggttgaaaagatgagacgagtgaggaagccattgataagatttgatgatggagctctaagctctgctccagaaggaggatgaagagaagaagaag  1503800                                                                    --------->DEAR3(1)                                                                   --------->ANAC58                                                                   --------->ANAC58                                                                   --------->ANAC46                                <---------GLK1(2)                 <---------At5g28300      ----------                               --------->At4g35610            <----------DOF2              ------>NtERF2                               <---------ZAT2           --------->YAB1         --------->ZAT18                               <---------At4g35610      --------->ATHB12       <---------ZAT18         --------->LBD16     *TSS   --------->HSFB2a(2) <---------ICU4       --------->At4g35610        --------->HSFB2a(2) <---------MYB52(1)         <---------ATHB12      <---------At4g35610        <---------HSFB2a(2)<-----------HVH21           --------->ICU4     <---------MYB52(1)        < --->ANAC81 ---------->DOF2<-----------TGA1     <----------DOF2<-----------HVH21       <-----------GT1   agcgttttatccagaaaagacttatccatcgtcagcttctgtaatcccctctttcaaatcattactttcacggcccattagctcactattttcggcccat  1503900                                                                                                   --                                                                                                  <--                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                -----                              --------->ATHB51                                                 <-----                 --------->ALFIN1                                                             -------               <-----------RAV1(1)                                                           --------            ------>ZmHOX2a(1) <---------ICU4                                                 <-------         ------>MYB46(1)      --------->ATHB12                                               <-------         ------>MYB83        <---------YAB1                 <---------ICU4                   --------       ------->GAMYB         --------->ICU4              --------->YAB1                     <--------    <-----------GT1  ------------>CBF            <<<<<<<<<GATA-1                            --------- >ID1 --------->MYB46(3)  --------->AHL20(2)    <-----------GT1  <---------ANAC46   --------->HSFB2a(2) ----------DOF2<---------ANAC46        <-----------GT1--------->YAB1                <---------HSFB2a(2)   tacttttaaccatccttctgtgggacaattcattatttgtgtaacccatttatctatattgatcatggcctattatctcactgtttctaggcccattatt  1504000  <-----------GT1 ------->YAB1 -------YAB1 ------AHL20(2) ----->AHL20(2) ------AHL20(1) ----->AHL20(1)                --------->ALFIN1 ---->YAB1                    ------->MYC2 ----YAB1                     <-------MYC2 -->AHL20(2)                  <-------MYC3 ->ATHB51                     ------->MYC3                                   <---------ANAC58 --ICU4                     ------->TEIL                                     <---------ANAC58 -HAHB4                  <---------ATHB12                                    <---------ANAC46       < ->YAB1              --------->MYB46(3)                                     <-------TEIL         ---- -YAB1              --------->ANAC46                           <---------GLK1(2)        <---------YAB1 >ICU4            <-----------GT1 <---------ANAC46<---------TOE2(3)<---------YAB1    <------ZmHOX2a(2)   ataataactgttcacaaaatttacccaatgaacgtggagtttggattagattaatgaagtcaatagattattagtagatgcgtttggatcaaaattgtgc  1504100                                    ---------->DOF2                                <---------------AGL15           <---------ANAC55(2)  --------------->AGL15     --------->LBD16           <-----------------AGL3    --------------->AGL15    ------->TEIL    ============================================MADS_MADS    <---------------AGL15    --------->ARR14(2)   ----------------->AGL1    <---------ARR14(2)   <-----------------AGL1    --------->GLK1(2)                            --------->AHL20(2)   <-----------------AG      <---------ARR11(1)                           <---------AHL20(2)   =============================================MADS_MADS        ------->GAMYB ----------DOF2             <---------ARR14(1)                --------->MYB52(1)        <---------PCF2 --->TEIL  <---------TOE2(3)<---------CCA1(2)       <-----------GT1      --------->AHL20(2)   -------   atctttcccgattaagtatgttttcaagtcgaatcttttaaaggcatggattttaaactactcttaacagacaaatttaaaaatgaaatgggcccttacc  1504200                                                                                              -------                                                                                              <------                                                                                            <--------                                                                                            <--------                                                                                           --------->ARR14(2)                                                                                           <---------ARR11(3)                                                                                           <---------ARR14(2)                                                                                           --------->ARR11(3)                                                                                           <---------ARR14(3)                                                                 ----------->RAV1(2)       --------->ARR14(3)                                         ---------->DOF2       <-----------GT1           ----------->ARR10                                ---------->DOF2            <---------AHL20(2)         --------->WRKY18(1)                              <-------TEIL                 --------->AHL20(2)       <------MYB46(1) ->P       --------->ANAC46  --------->CCA1(2)     ----------->GT1 ------>ZmHOX2a(1)<------MYB83   ctcagaaaaatccaaacaacaaattgagaagattcaaagaaaaaaaagatgaactgtatatttattttcctggttcacatttcatttggtcaagatattc  1504300  Previous    Next  AGI:  At1g05190.1    Description:  EMB2394 (EMBRYO DEFECTIVE 2394); structural constituent of ribosome. Identical to 50S ribosomal protein L6, chloroplast precursor (RPL6) [Arabidopsis Thaliana] (GB:O23049); similar to ribosomal protein L6 family protein [Arabidopsis thaliana] (TAIR:AT2G18400.1); similar to Os03g0751400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051292.1); similar to Os03g0356300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050139.1); similar to hypothetical protein OsJ_010435 [Oryza sativa (japonica cultivar-group)] (GB:EAZ26952.1); contains InterPro domain Ribosomal protein L6, conserved site-1; (InterPro:IPR002358); contains InterPro domain Ri Range:  from: 1502343    to: 1503829    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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