Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 --------->CCA1(2)                                                              <---------ARR14(2)                                                              --------->ARR11(3)                                                              <---------ARR11(3)                                                       --------->At4g35610                        --------->ARR11(3)             ----------->RAV1(2)  <-------TEIL                  --------->YAB1                       <---------At4g35610 --------->ARR14(2)          ----------->TGA1--------->TOE2(3)        <-----------HVH21    <---------TOE2(3)         <--     <----------DOF2<---------YAB1                 <-----------TGA1     --------->DAG2  <--------P--- <---------ALFIN1<---------ATHB12                 --------->YAB1        <---------TOE1(3)   <--------   cagacacctttagtgacgaatcataataccttgaaattcagagccgattgaatcgtcatctgaagatatagcataaggttcttcatcagggttgatacca  1475700                                                               ------->TEIL            --------->CCA1(2)                                  --------->ARR14(2)            <------ZmHOX2a(2)                                  <---------ARR14(2)           --------->ARR14(2)                   <---------AHL20(2)           <---------ARR11(3)                   --------->AHL20(2)           --------->ARR11(3)                  --------->AHL20(2)           --------->AGP1                   --------->AHL20(2) <-----------ARR10      =============HOX2a_HOX2a             <---------YAB1      <---------ARR11(1)      ------>ZmHOX2a(1)                 <---------YAB1        <---------CCA1(2) -------ARR14(2)                     --------->ICU4     --------->ETT(2) ------>ARR14(2)                   ---------->DOF2      <---------ETT(2)   ---------->DOF2 ---GT1    <---------ARR14(2)  >>>>>>>>>TBF1<---------AHL20(2)<---------ARR14(1)                  ---   gttccttcctcgagatccacaactacttgagaagaagaaaagattataaattaatctctcgaccgtatctaaggccctaaagtttcaatttctaccctca  1475800                                                       --------->ZAT14                                                       <---------ZAT18                                                       <---------ZAT14                      <------ZmHOX2a(2)                                                  --------->At4g35610               <---------ZAT6                                                  <---------YAB1              --------->AHL20(2)                                               <------ZmHOX2a(2)              <---------AHL20(2)          <---------ZAT18                     <---------ARR11(3)             <---------ATHB12 -------          --------->ZAT18              --------->MYB52(1)                    --------->AHL20(2)    <-----------HVH21         --------->YAB1 --------->GLK1(1)             --------->WOX13(1)------>ZmHOX2a(2) ------->DOF2               <---------ARR11(3)--------->ARR11(3)     --------->AHL20(2)   <---------At4g35610   caaagacatcagggcacaataccaaaactatatcatcaaattaacagagatcatcagagcacaatacccaaaaaaatcaattaatagagttcagatcgca  1475900                                --------->LBD16                               --------->ANAC58                               --------->ANAC58                               --------->ANAC55(2)                               --------->ANAC46                              ------>ZmHOX2a(2)                            <---------ARR14(2)                            --------->ARR14(2)                          ----------->ARR10                          <---------YAB1                    --------->ZAT14                                                           -------                    <---------ZAT18      <---------ANAC46                                     -------                    <---------ZAT14      <---------LBD16                                      -------                    --------->ZAT18     <---------LBD16                                       <------ -->ZAT18  <---------MYB52(2) <---------LBD16 <-------TEIL       <------ZmHOX2a(2)------->GAMYB -----   ctgaaacagagacactaacaagttcactatgatccgcaatttctcgggtacaatgggacgattagggatcaaacccaaaatcaacagcgagaaatcacga  1476000                                                   --------->DEAR3(2)                                                 --------->TCP20                                                 <---------PCF5                                                 <---------PCF2                                                 --------->TCP15(1)                                                ----------->HVH21                                                <---------SPL7     <---------ANAC46                          --------->LBD16   <---------ANAC46                           <---------ANAC58   <---------ANAC58                           <---------ANAC46   <---------ANAC58                           <---------ANAC55(2)                              ------ <-----------HVH21                            --------->ANAC55(2)                           <-------- -->ANAC58                                   <---------LBD16<---------ALFIN1               --------->ATHB12 -->ANAC46--------->ICU4               <---------DAG2   --------->ZAT2 ------>ZmHOX2a(1)  <---------YAB1 -->ANAC58<---------YAB1               <----------DOF2  --------->At4g35610             <------ZmHOX2a(1) ---ANAC55(2)                     ------->TEIL<---------ANAC58        <---------MYB59 <---------TOE2(3) ----->DOF2                       --------->ARR14(2)    <---------At4g35610  *TSS <------------CBF   aagggtcgtgtgaagattaccttcagtcgatggacgaatcgccttattgcgggaccgaagctccatctctgtcctaattcgcaaaattgaggataattgg  1476100                                                                              --------->LBD16                                                                             <---------ANAC46                                                                          <---------DEAR3(1)        =                                      <---------MYB46(3)                 --------->SPL7             =                                      <------MYB83                      <---------ARR14(2)          -                                      <------MYB46(1)                <---------HSFB2a(2)            <                                      <---------DEAR3(2)             --------->HSFB2a(2)            <                                     <---------DEAR3(1)         <---------WOX13(1)    --------->ANAC58                                    <---------ORA47(1)         <---------ANAC58       --------->ANAC46                          <---------HSFB2a(2)                  <------------CBF       --------->ANAC58             ----------->GT1      <---------MYB46(3)          --------->ATHB12------>NtERF2         -             <---------ZAT6      --------->ALFIN1            <---------YAB1 <---------LBD16         -      <---------TOE2(3)   --------->HSFB2a(2)      <---------------AGL15--------->MYB52(1)          < ----->GT1  <---------TOE2(3) --------->DAG2       --------------->AGL15--------->ARR14(2)          < ----CBF    <---------TOE1(3)---------->DOF2    <-----------GT1<---------ANAC58<------NtERF2        <   aaaattttaagtttagggttactatgttctataaagtggtcggttctatttttccattttttgttgattgtccagaacggcgggaaacacgacattatac  1476200           -------->P          --------->MYB52(1)         ------->GAMYB        <---------MYB46(2)        --------->MYB46(3)                                    ------>ZmHOX2a(2)        <---------MYB52(2)                                   <------ZmHOX2a(2)       --------->At4g35610                                  <---------ARR14(3)       <---------At4g35610                                  --------->ARR14(3)   <-----------HVH21                                        --------->ARR11(3) ================MYC_MYB                                    <---------ARR14(2) ===================MYC_MYB                                 <---------ARR11(3) -------->ANAC55(2)                                         <---------AGP1 ---------bZIP60(2)                                         --------->AGP1 <---------AHL20(2) ---------TGA1a                               --------->WOX13(1)           --------->AHL20(1) -------->TGA1a--------->MYB52(1)           <---------At4g35610            --------->AHL20(2) -------->O2   ------>MYB46(1)           --------->At4g35610--------->ARR14(2)       --------->ANAC58 ---------O2   ------>MYB83              --------->ZAT14   --------->RVE1(1)         --------->ANAC58 ---------ANAC58                         <---------ZAT14---------->DOF2   --------->AHL20(2) ---------ANAC58  <---------MYB46(3)<---------YAB1   --------->MYB46(3)   <---------AHL20(2)      ---   agacgtgtcaactaacctatcggttcgattagcaaattgtgactgcagcaatctaaccaaaagatcttgtatcaaattaaattggagaagcaatgctaaa  1476300                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                       <---------YAB1                 <---------ANAC46                                                                 <--            --------->ANAC55(2)                                                             ---------           <---------TOE2(2)                                            --------->YAB1    -------->P           <---------TOE2(3)       <---------ANAC46------->MYC3         <-----------GT1 --------->MYB46(3)           --------->MYB59         <---------ANAC55(2)          --------->ANAC46        <---------MYB111(1)     --------->AHL20(2)<---------AHL20(2)          <-------MYC3 --------->ANAC58    <---------MYB59 -------->GT1    ----------->GT1--------->ICU4 <-------TEIL     --------->ANAC58   --------->ANAC46   tggaaaattaacttaggtatcgtatattatagacattatgtgaaaccgatacatgtgtaatgtgagacgcaaaatcacaatctctacataactaccaaaa  1476400                      <---------ICU4                      --------->YAB1                      -------->HAHB4                     <---------YAB1                     --------->ICU4                     <---------ATHB51                    <---------AHL20(2)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   --------->YAB1    --------->ATHB12                  <---------YAB1     -------->HAHB4                 <---------AHL20(1)  <---------ICU4                 --------->AHL20(1) <---------YAB1                   <---------DAG2                 --------->AHL20(2) <---------ATHB12        =======================HOX2a_HOX2a                 <---------AHL20(2) --------->ICU4          ------>ZmHOX2a(2)       --------->ARR11(3)          <---------TOE2(3)      --------->ARR11(3)       --------->ARR14(2)  <---------ANAC58               <---------ARR11(3)    <-----------HVH21       <---------ARR14(2)  <---------ANAC58             <---------YAB1      ------>ZmHOX2a(1)-------- --------DOF2   --------->YAB1   <---------AHL20(2) <----------DOF2  <----------DOF2     ----------->GT1 >AtMYB61      <---------YAB1    --------->AHL20(2) <---------DAG2<-----------GT1      ---------->DOF2   cttttagtagatactgtattataataatggcttaattaatgatggaaactatagctttatgatctatttgactttatccttctgtccgataaagataaat  1476500                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                --------->PCF2                ---------->ID1         <---------AHL20(1)         <---------ARR11(3)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         --------->ARR11(3)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         --------->AHL20(1)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                         <---------ICU4     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                              --------->AHL20(2)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                <---------ATHB51     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                               --------->ICU4    <------ZmHOX2a(1)      --------->CCA1(2)                                <-----------GT1 --------->HSFC1(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->HSFB2a(2)    <xxxxxxxxxxxxxxxxsmallRNA(i)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------HSFB2a(2)  ---------->DOF2                                      <-----------GT1          < <---------HSFC1(1)----------->RAV1(1)                             <-----------GT1      <---------AHL20(2) ->AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)               xxxxxxxxxxxxxxxx>smallRNA(i)          -   tttctaggaaaaatatttgtcccacaaagatagaagttttatatttccaatgcaaattttaaaactgttttcccgttttacccttactaaataattagat  1476600  Previous    Next  AGI:  At1g05120.1    Description:  SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein. similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24011.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Helicase, superfamily 1 and 2, ATP- Range:  from: 1471405    to: 1476077    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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