Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                --------->ANAC58                                                                              --------->ANAC58                                                                           --------->ARR14(2)                                                                           <---------ARR14(2)                                                                         --------->ANAC58                                                                         --------->ANAC46           -                                                                    ----------->HVH21           -----                                                               ------>ZmHOX2a(2)              -------                                  --------->ATHB12             =================================HOX2a_HOX2a                                 --------->ICU4              --------->ARR11(3)               -------   <---------HSFB2a(2)    ---------->DOF2 ---------->DOF2    <---------ARR11(3)       <-----------RAV1(2) ------YAB1   --------->At4g35610<---------YAB1          <---------AtLEC2--------->ANAC58<------ZmHOX2a(1)   tgataccagaaaactcacctcaagaacacaaagacatgattagaaaaagaaggtaacctgcatgatctctcggacacgatactcaacatcaggagcaagc  1407100                       <------MYB83                       <------MYB46(1)            --------->ANAC55(2)            --------->ANAC46        <-----------HVH21      --------->ZAT2  --------->MYB59                          ------>ZmHOX2a(1)             <-------      <---------At4g35610                                      <---------MYB52(1)            <-------      --------->At4g35610                                  --------->ARR14(2)               <-------- --------->DOF2      <--------P                   --------->TOE2(3)                   <-----------RAV1(2) ---->YAB1  ----------->GT1                       --------->TOE1(3)  <-------TEIL     =============== -->ANAC58  <---------At4g35610           <---------At4g35610 --------->TOE2(3)--------->At4g35610 -->ANAC58<-----------RAV1(2)        <----------DOF2      <---------MYB52(1)   <---------At4g35610   ataagagcagcttcaggtaacaagttggtaatcccaatactttgagctattacctcaaccgtttccttaggtacaatgctcatcttccccaggctgctta  1407200                                                                                   ------>MYB83                                                                                --------->MYB46(3)                                                                                --------->HSFC1(2)                                                                                <---------HSFB2a(1)                                                                        -------->ATHB1                                                             <----------ID1     --------->HSFB2a(1)    --------->ALFIN1                                       <---------------AtSPL8  ------>MYB46(1)  <-----------RAV1(1)                            <---------ANAC55(2)    <---------ICU4     <--------- --ANAC58                              <---------MYB46(3)  --------->DAG2       <---------HSFC1(2) --ANAC58 --------->CCA1(2)            ----------->GT1    ---------->DOF2     --------->ARR14(2) <--- -At4g35610     <------ZmHOX2a(1)----------->RAV1(1) ----------->GT1    --------->ATHB12 --------->AHL20(2) =============RAV             --------->TOE2(3)  --------->ANAC55(2)   <---------YAB1   <---------ATHB12   tccactgtggcgatacaaggacacagaagaaacatcaacagtggttatattaagtaagaaaaaagcacaaaaaatcattggaacctcccaattaaaccat  1407300                                                                 --------->DAG2                                 <-----------RAV1(2)            ---------->DOF2                                 <---------HSFB2a(2)         --------->LBD16             --------->TOE2(3)                  --------->ANAC58                          <---------ANAC55(2)       <---------DOF5.7(2)             <---------ATHB12------->GAMYB                  <---------ANAC46         --------->WRKY38(1)  <---------ANAC46--------->ANAC58       ---------->DOF2   <---------LBD16          <---------MYB52(1) --GT1  --------->ANAC46   <---------At4g35610  <---------At4g35610            ---------->ID1 --------RAV1(1)------->TEIL--------->MYB46(3)  --------->At4g35610 ----------->GT1 --------->DOF5.7(2)   tgttgggcatacacaatgaatcgcaattcaacagcccagaagacaaaggctgcttccatactccgtaaaagtgtgaaatttgtcccgttaaccaaaattc  1407400                                                                      <---------ZAT14                                                           --------->AGP1                                                           --------->ARR11(3)                                                   <----------ID1     --------->ZAT14                                               --------->WRKY38(1)  --------->bZIP60(2)                                               --------->WRKY12     --------->ANAC46             <---                                             <-------GAMYB <---------ARR11(3)           --------->ZAT2                                            <---------ANAC58<------ZmHOX2a(2)           --------->At4g35610                                            <---------ANAC58--------->CCA1(2)           --------->HSFC1(2)                                        --------->GLK1(1)  <---------ARR14(2)           <---------HSFC1(2)                               --------->LBD16<----------CDC5      *TSS                 --------->HSFB2a(1)                             <---------LBD16<---------ANAC46============================HOX2a_HOX2a                            ------->TEIL<---------GLK1(1)  --------->ARR14(2)           <---------HSFB2a(1)                       <---------AtLEC2<---------ARR14(2) --------->GLK1(1)       ---------->DOF2----      --------->YAB1 <-----------GT1   --------->ARR14(2)----------->ARR10       <------ZmHOX2a(1) --   gagcacaaaaataagttggaaatttacatgaaccggagagggatttgcgttgagcgacgaagatccagacacttcacttgagaggaaagaagctccgatt  1407500                                                                                          <---------AHL20(1)                                                                                          --------->AHL20(2)                                                                                          <---------AHL20(2)                                                                               <---------ANAC58                                             <---------AHL20(2)       <------MYB83        --------->AHL20(1)        --------->ANAC58             <------NtERF2                    <------MYB46(1)    --------->AHL20(2)        --------->ANAC58             --------->LBD16                <--------P <---------ANAC46    ------>NtERF2                   <---------ANAC46               <---------MYB52(1)    <---------AHL20(2) --------GT1                      ------>NtERF2 <---------WOX13(1) <-------GAMYB ----------->GT1 ----->MYB52(1)----------->GT1  --------->LBD16<------------CBF <---------LBD16<---------ANAC58 ------->MYB46(3)             <---------LBD16<---------YAB1  <-----------GT1  <---------LBD16     <--   aaccgatgccaagcctcttgttaatataagaagccgggccgggttttttaattgctgtcaaattcacccggttggactatttcgggttaaattaaatttg  1407600                                                                                         <------ZmHOX2a(1)                                                                                        <----------ID1                                                                                     ---------->DOF2                        --------->ANAC58                 ------>NtERF2            --------->HSFB2a(2)            <---------------AGL15              --------->AHL20(2)             --------->TOE2(2)            --------------->AGL15              <---------AHL20(2)             --------->TOE1(2)           <-----------------AGL2           --------->AHL20(1)           --------->AHL20(2)--------->ANAC58         <---------ARR11(3)                 --------->AHL20(2)  ---------->DOF2------>ZmHOX2a(1)        <---------CCA1(2)        --------->YAB1<---------AHL20(1)        <---------AHL20(2)--------->ANAC58 -------At4g35610       --------->ANAC58    <---------AHL20(1)<---------MYB52(2)  <---------HSFB2a(2)   ggctgtctctatatctattttgggccaaggcccaataagagcgaaatattttatttctctgccaactaaagacaattaatcctacgagaaaggacgaaac  1407700                                     <----------DOF2                                    --------->At4g35610                                  <---------ARR11(3)                              ---------->DOF2                                <---------MYB46(3)      --------->YAB1        <----------ID1                <---------AGP1 <--------P         --------->ANAC46         ---------->DOF2   --------       --------->ANAC46   <-----------RAV1(1)<-----------GT1      ------>ZmHOX2a(2)--------->DAG2   aaatgtttcaagacagtagttctgtcttctgtggtagttctttctattttctacacaaacaaaattgatccaaacacaaaaggaaaaaggagcacaaaag  1407800                                --------->TOE1(3)                                --------->TOE2(3)                       --------->AHL20(2)                           ---------->DOF2                              <---------YAB1             <-                       <---------ANAC55(2)                              <---------AHL20(2)      <----                       <---------ANAC55(1)                             <---------AHL20(1)       <----                      <-----------------------TaNAC69(2)               --------->AHL20(2)       <----       <---------ATHB12--------->ANAC55(2)       <----------DOF2      --------->YAB1           <-----     --------->WOX13(1)<---------ANAC46      <----------DOF2        ------>MYB46(1)         <--------   <---------ATHB12 --------->TOE2(2) --------->YAB1                ------>MYB83         ------>MYB46(1) -->DOF2--------->YAB1<-------TEIL    <-----------GT1    --------->YAB1--------->AHL20(1)------>MYB83   tccaaatcaatgaagacatcaacatacgtgaaagccttaatcacactctttctttacaaacatcaagaccaaatataattaggggcaaaccaaattgttg  1407900                                              <---------ICU4                                              -------->HAHB4                                              --------->ATHB12                                              <--------ATHB1                                              --------->ATHB51                                             --------->ICU4                                             <---------YAB1                                   <---------AtLEC2 --------MYB46(3)                <-----------GT1<---------WOX13(1)       <----------ID1 --MYB83--------->AHL20(2)   <----------DOF2 --------->AHL20(2)     --------->GLK1(2)        <------- --MYB46(1)            <-----------GT1       <---------AHL20(2)    <---------GLK1(2)--------->ANAC58 -----MYB46(3)     <---------ARR11(3)        <---------ATHB51   <-----------------AGL3    <---------ARR11(3) ----AtMYB61       --------->ARR11(3)      --------->YAB1----------------->AGL2     --------->ANAC46 ---RAV1(1)        <---------GLK1(2)     --------->AHL20(2)     --------->YAB1      --------->ANAC58   gtggatgcaataacatatgtagatttttcttctttttacatgaaaaaataattgccagtcccagtatcagaatttgggacgaatacaagcaatttctttg  1408000  Previous    Next  AGI:  At1g04950.1    Description:  TAFII59 (TBP-ASSOCIATED FACTOR 6); transcription initiation factor. similar to TAF6B1/TAF6B2/TAF6B3/TAF6B4 (TBP-ASSOCIATED FACTOR 6B1), DNA binding / RNA polymerase II transcription factor/ transcription initiation factor [Arabidopsis thaliana] (TAIR:AT1G54360.4); similar to unnamed protein product [Vitis vinifera] (GB:CAO23965.1); contains InterPro domain TATA box binding protein associated factor (TAF); (InterPro:IPR004823); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Protein of unknown function DUF1546; (InterPro:IPR011442) Range:  from: 1403084    to: 1407467    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g04960.1    Description:  similar to bZIP family transcription factor [Arabidopsis thaliana] (TAIR:AT1G27000.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73938.1); contains InterPro domain Protein of unknown function DUF1664 (InterPro:IPR012458) Range:  from: 1407800    to: 1410867    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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