Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    ====================HOX2a_HOX2a                                                 --------->At4g35610                                                 =====================HOX2a_HOX2a                                                 <------ZmHOX2a(2)                                                <---------ARR11(3)                                                --------->ARR11(3)                                                <---------ARR14(2)                                                --------->ARR14(2)                                                --------->GLK1(2)                                               <------ZmHOX2a(1)                                              --------->HSFB2a(1)                                         --------->ANAC58                                         --------->ANAC55(1)                                         --------->ANAC58                                         --------->ANAC46                                         <---------ANAC55(2)                                         --------->ANAC55(2)                                        <---------LBD16                                      <---------MYB52(1)                                      <------NtERF2                                      ----------->HVH21                                      <---------REM1(2)                                     <-----------HVH21                                     <-----------TGA1                                    --------->ANAC46                                    --------->DEAR3(1)                                  --------->At4g35610----------->HVH21                                  --------->ZAT2<---------AGP1 --------->HSFB2a(2)                           <---------GLK1(2)  <---------HSFB2a(1)                          --------->At4g35610 <---------HSFC1(2)                     ------>MYB46(1)--------->RAP2.6(2)        ------>ZmHOX2a(1)                     ------>MYB83 ------>MYB46(1)--------->GLK1(1)                 --------->PCF2   ------>MYB83----------->ARR10<---------HSFB2a(2)               <---------SPL7    --------->ANAC46<---------GLK1(1)                               ----   <---------LBD16 --------->MYB46(3)<---------RAP2.6(3)   ------->TEIL                        <----- -->ANAC58   --------------->AtSPL8 --------->RAP2.3(2)    <---------ARR14(2)                 ------- ---->GT1    <---------------AtSPL8 --------->RAP2.3(3)    --------->ARR14(2)        --------->TOE1(2) -->ANAC58 <------ZmHOX2a(1)    --------->MYB46(3)------>ZmHOX2a(2)     --------->ALFIN1    <-------- >GT1    --------->ALFIN1 <---------At4g35610 --------->HSFC1(2)       <-----------HVH21----------->HVH21   aaaactcgggcgaggagggtacccactcagattaccagccgtcacggaaggatctgcgacgaatcctcgaacaggtcgggctgaaaaccctcgacccggt  1398700                            ------>ZmHOX2a(2)                           <------ZmHOX2a(2)                          ------->TEIL                          --------->ARR11(3)                          <---------AGP1          --------->ARR14(2)                          <---------ARR14(2)      <---------ARR14(2)                    ----------->HVH21      ----------->HVH21                    --------->WRKY12     <------NtERF2                  ----------->RAV1(2)    --------->At4g35610               <---------YAB1                  --------->ZAT2         <---------At4g35610             <-----------GT1                  <---------At4g35610  <---------ANAC46            ----------->GT1   --------->MYB52(1)--------->MYB52(1)<---------ANAC58      <---------ANAC58 ------>DOF2      <---------ZAT2       <---------ANAC58      <---------ANAC58 ----MYB52(1)     --------->At4g35610  <---------RAP2.6(2)  <-------TEIL<---------YAB1    <---------MYB46(3) -->LBD16 ---------->DOF2 <---------ARR11(3)    --------->LBD16   <---------TOE2(3)  <---------GLK1(2) -LBD16----------->GT1    --------->ARR14(2)  <---------LBD16<---------ANAC46 ---------->DOF2   agagcaaacgggtaaagaacagctgacggatcttgaatttggcgtctgaccggaatcgaatgtgcgtagaggttattactataagcagattgttgttgga  1398800                                                      --------->At4g35610                                                      <---------At4g35610                                                      <---------ABI4(1)                                                      <------NtERF2                                                      <---------LBD16                                                     ------>NtERF2                                                     <---------RAP2.6(1)                                                     <---------RRTF1(1)                                                     <---------ATERF1(1)                                                     <---------ERF1                                                     <---------ORA47(2)                                                     <---------RAP2.3(1)                                                    <---------ANAC58                                                    <---------RAP2.6(2)                                                    <---------RAP2.3(2)                                                    <---------RAP2.3(3)                                                    <---------DREB2C(2)                                                    --------->ATERF1(2)                                                    <---------RRTF1(2)                                                    <---------DEAR3(1)                                                    <---------ANAC46                                                    <---------ATERF1(2)                                                    <---------RRTF1(3)                                                   --------->ATERF1(1)                                                   <---------ABI4(1)                                                 --------->ALFIN1                                               --------->MYB52(2)                                               <---------MYB46(3)                                              --------->ALFIN1                                             <------NtERF2                                             <-------GAMYB                                            <---------DEAR3(2)                                            <---------MYB46(3)                                           <---------DEAR3(1)                                          <------NtERF2--------->ALFIN1                                          <---------ABI4(1)                                          --------->ATERF1(1)                                         <---------RRTF1(1)                                         <---------RAP2.6(1)                                         <---------DEAR4(2)                                         <---------RAP2.3(1)                                         <---------ERF1<---------ANAC46           <---------AtMYB61                                         <---------ORA47(2)                    <---------DEAR3(1)                                         ------>NtERF2--------->ATERF1(1)      <---------DREB2C(2)                                         <---------ATERF1(1)                  <------NtERF2                                        <---------RAP2.3(3)                   <---------ABI4(1)                                        <---------RAP2.3(2)                  <---------RAP2.3(1)                                        <---------RAP2.6(2)          <------NtERF2--------->ALFIN1                                        --------->ATERF1(2)          --------->At4g35610                                        <---------DEAR3(1)           <---------At4g35610                                        <---------ATERF1(2)        --------->ALFIN1<---------MYB46(3)                                        --------->DEAR3(1)         <---------RAP2.6(2)                                        <---------RRTF1(2)        --------->ATERF1(1)                                        <---------RRTF1(3)       <---------bZIP60(2)                                       <---------ABI4(1)        --------->ALFIN1 <------NtERF2                --------->ALFIN1       <------NtERF2<---------ANAC58<---------MYB46(3)  --------->MYB52(1)               <---------At4g35610     <---------At4g35610      <---------AtMYB61<-------GAMYB               --------->At4g35610     --------->ATERF1(1)     <------ZmHOX2a(1)<---------MYB46(3)           <---------ANAC58           <---------ORA47(2)    <-----------RAV1(2)--------->ALFIN1           <---------ANAC58           <---------RAP2.3(1)  --------->ZAT2    <---------DEAR4(2)          <------NtERF2               <---------ATERF1(1)--------->ATERF1(1)<---------RAP2.3(3)        <---------DEAR3(1)           <---------DREB2C(2) <------NtERF2<---------ANAC46 ----------->HVH21        --------->ALFIN1             <---------RAP2.3(3)--------->LBD16     <---------DEAR3(1)      <---------ANAC58               <---------DEAR3(1)<---------DEAR3(1)   <---------RAP2.3(2)      <---------ANAC58--------->CCA1(2)--------->At4g35610 <---------ZAT2----------->HVH21      <----   acggattagggtggcgaagcggagctatgggtctgtaagtcggcggcggtagtggcggcggagcaggaggtggctgagacggcggtggtctaacagtgtt  1398900                                                                                           <------NtERF2                           <---------MYB46(3)                                             <---------RAP2.3(1)               --------->ARR14(2)                                      <---------LBD16    <---------ATERF1(1)               <---------ARR14(2)                             --------->ALFIN1            ------>NtERF2             <---------HSFC1(2)                              =================HOX2a_HOX2a<---------RAP2.3(3)             --------->HSFC1(2)                              <------ZmHOX2a(1)           <---------DEAR3(1)             <---------HSFB2a(1)                         --------->LBD16       <-----------GT1<------NtERF2          --------->LBD16 --------->ALFIN1              <---------ANAC46--------->HSFB2a(2)<---------LBD16        <---------LBD16 <---------ANAC46               <---------LBD16 ------>ZmHOX2a(2) --------->ATERF1(2)       --------->MYB52(1) <---------ANAC46             <-------TEIL  --------->ARR14(2)  <---------ATERF1(2)      <-----------GT1  <---------DEAR3(1)           --------->CCA1(2)<---------ARR14(2) --------->SPL7   <---------ZAT6  <---------At4g35610         <---------MYB52(1) XXXXXXXXXXXXXXXXXXXX>MIR832-5P -----ZAT14  --------->HSFB2a(1)              <-----------HVH21 --------->ALFIN1      ----------->HVH21   tactggtgttaccggagtttccgatgcggtggatagagacggagacaccgttagagatgcggaggagttgggatcgggaattgacattccgacggcggaa  1399000                                                                                             --------                                                                                            ------->TEIL                                                                                            <--------                                                                                   -------->HAHB4                                                    *TSS--------->DAG2            --------->ICU4                                              <----------ID1                    --------->YAB1                                            ---------->DOF2          <------MYB46(1)        ---------                                        --------->At5g28300          <------MYB83 <---------ATHB51                                       ----------->GT1 ---------->DOF2<-----------HVH21 --------->LBD16                                    ------------------------>ANAC81 --------->MYB59---------->DOF2     ---------->ID1            <---------LBD16----------->GT1<-----------------AGL1<---------ICU4   ggaatttgtcgattcgattttcaaaagaatttttggggaaacagtaaaaagaaaaaaaaaagtttcaaatttggtcacggtttaataatgcgcgaaccct  1399100                                 ------>ZmHOX2a(2)                --------->ANAC58                                <------ZmHOX2a(2)                 --------->ANAC58                               <---------ARR14(2)                 --------->ANAC46                               <-----------ARR10                 <---------LBD16                   <-                               --------->ARR14(2)           <---------AHL20(2)                     <-                  <---------TOE1(3)                         --------->AHL20(2)                     -- ->HSFB2a(1)      <---------TOE2(3)                        --------->AHL20(2)    *TSS<---------ARR14(2) -ARR14(2) <------MYB46(1)    <---------RAP2.6(3)     ------------>CBF    ---------->DOF2       <---- >ARR14(2) <------MYB83      ----------->ARR10      <---------ZAT6<---------ANAC55(2)--------->ARR14(2)   cttactcatagggaggttttcaggttttgggccgatctgggcctgagggtattagtgtcaatttaaacacgggagagaaagagagagtaatcgccatttt  1399200          <---------ANAC46                   --------->At4g35610     <---------LBD16           <---------At4g35610 --------->ATHB12              --------->At4g35610                                     --------->ZAT2 --------------AGL15      <---------ARR14(2) <---------At4g35610                       --------->At4g35610 ---------DOF2           <------ZmHOX2a(1)<-------TEIL                                 <---------At4g35610 ------------->AGL15<------ZmHOX2a(1) <---------------AtSPL8                           <---------ZAT2 -------GT1  <---------ZAT14 <-----------RAV1(2)  ------->TEIL              <----------DOF2      <---   tctttattgggggagtgaagaaggataggattcagatgatgaagtacagatgaatgctccataaaccctactcttcttcttttacctccagcttcgatta  1399300                    <-------TEIL                 --------->HSFC1(2)                 --------->HSFB2a(1)                 <---------HSFC1(2)                <---------TOE1(3)     <---------ANAC46                                                              <----------DOF2     <---------ANAC58          <<<<<<<<<TBF1                        --------->GLK1(2)     <---------ANAC58----------->GT1                           ---------->DOF2     <---------WOX13(1) --------GT1    <---------TOE2(3)                           <---------YAB1  <---------YAB1    <------   taccattccttgtttgtgaaggttcgtaacttcttcttctctctaaattatctcatggatttatgaaaagaatcgattttgtttgatttatgggttctaa  1399400                 <------MYB83                 <------MYB46(1)                <---------AtMYB61                --------->MYB111(1)                ----------->ARR10                                <---------MYB59                --------->MYB59                                  ----------->GT1                --------->MYB46(2)                           <---------SPL7               <--------P        <---------ZAT2            <---------------AtSPL3             <---------ANAC46    <---------At4g35610       <---------------AtSPL8             <---------ANAC58    --------->ZAT2           <---------ANAC46 ---YAB1     <---------ANAC58  >>>>>>>ZML2             <----------DOF2  <---------YAB1     <---------AHL20(2)   ttagtcgaagcgcttgggtaggtttgcaatgttctagctggtcttgagcaatctctggtttagggtaccgaaatatgtttatgggaattgaaatttatcg  1399500                                                    --------->MYB52(2)                 <---------YAB1                                                   <---------TOE1(2)                 --------->YAB1                                                  <---------MYB52(1)                <---------YAB1                                                <---------ANAC58                  --------->YAB1<----              --------->ZAT14                   <---------ANAC46                  <------ZmHOX2a(1)    --------->GLK1(2)                           <---------ANAC58                 --------->ICU4------   --------->ARR11(3)               <---------GLK1(1)                           <---------TOE2(3)   <   <---------ARR11(3)  <---------MYB46(3) <---------TOE2(2)                 <------MYB83      ------- ----------->ARR10     <---------DEAR3(2) <---------TOE1(2)                 <------MYB46(1)   <------   gatgagattttgtttctacagtcgtctgttcaaattcgatttcccatgtttcgtttgttttggtataggcattttagttggtaaggatgataactggata  1399600  Previous    Next  AGI:  At1g04930.1    Description:  hydroxyproline-rich glycoprotein family protein. similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT2G32840.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67192.1) Range:  from: 1396292    to: 1399052    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g04940.1    Description:  TIC20; P-P-bond-hydrolysis-driven protein transmembrane transporter. similar to TIC20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV), P-P-bond-hydrolysis-driven protein transmembrane transporter [Arabidopsis thaliana] (TAIR:AT4G03320.1); similar to Tic20-like protein [Solanum tuberosum] (GB:ABB86268.1); contains InterPro domain Chloroplast protein import component Tic20; (InterPro:IPR005691) Range:  from: 1399181    to: 1400769    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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