Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         ------->TEIL                                                                                    <---------ANAC46                                                                                --------->ATERF1(1)                                                                                <------NtERF2                                                                               <---------ATERF1(1)                                                                               ------>NtERF2                                                                               --------->ANAC58                                                                               --------->LBD16                                                                               --------->ANAC58                                                                              <---------ATERF1(2)                                                                              --------->ATERF1(2)                                                                              --------->RRTF1(2)                                                                              --------->RRTF1(3)                                                                              --------->RAP2.3(2)                                                                              --------->DREB2C(2)                                                                              --------->RAP2.3(3)                                                                              --------->DEAR3(1)                                                                              <---------DEAR3(1)                                                                             <------NtERF2                                                                             --------->ORA47(2)                                                                             --------->ERF1                                                                             --------->RAP2.3(1) --------->YAB1                                                              --------->ATERF1(1) <---------ICU4              ------>MYB46(1)                                 <---------LBD16 ---ZmHOX2a(1)               ------>MYB83                                   <---------RAP2.3(1) ----TOE2(3)              --------->MYB46(3)                                <---------RRTF1(1) ----TOE1(3)      <----------DOF2                          ---------->DOF2  ------>NtERF2     ------- -DOF2 ---------->DOF2  <-----------GT1             ----------->HVH21       <---------ATERF1(1)   ---   gaatcataacaaagacacatctttttcaaccaatctctctctctcgctatcgctctgacaaaaaagagggaatttttgcgccggcaacgtatattagcct  1378800      <---------TOE1(2)  <-------TEIL                     <------ZmHOX2a(1) --------->GLK1(2)              <---------HSFB2a(2)         --------->ANAC46                   <----- --------->CCA1(2)              --------->HSFB2a(2)         --------->ANAC58               --------->MYB46(3) ---->RAV1(2)       --------->ANAC58                        --------->ANAC58            --------->MYB46(3) -------->ARR10     --------->ANAC58  <------NtERF2 <-------TEIL                      ----------->RAV1(1)   gagattcgaaggaacataaaccaagaaaacccctcgaggaggcatattaacaaatacattacaggcatctattgagaaattcaaggcccaacaacaactt  1378900                                                                                                 ----                                                                                                <----                                                                                                -----                                                                                              -------                                                                                       --------->LBD16                                                                                      --------->ANAC46                             ------>MYB83<---------GLK1(2)                            --------->LBD16             --------->AHL20(2)        ----------->ARR10                             <---------LBD16       --------->ANAC58      ------>MYB46(1)                         <-----------------AGL2  <-------       --------->ANAC58    <---------MYB59--------->GLK1(2)   ------->GAMYB      --------->GLK1(1)     ---------->DOF2       <---------MYB46(2)<---------HSFB2a(2)     <-----------------AGL3--------->ANAC58  ---------->DOF2 XXXXXXXXXXXXXXXXXXXXXXX>MIR829.1         ----------->RAV1(1)   <---------GLK1(1) -----DOF2  <---------MYB52(1)  --------->MYB52(1)   --------->ANAC46----------------->AGL3--------->ANAC58   tcttcaaagaagccattaattctctgttaccaaacaacgaatagattctcgatagacgatacaacagagaaaccatttttggggtttcccgcgaagcaac  1379000         --------->At4g35610        ----------->RAV1(1)      --------->At4g35610   ---------->DOF2 --->GAMYB  ---------->DOF2                                                              <----------DOF2 -----MYB52(2)               ---------->DOF2                                         <-----------GT1 ---->MYB46(3)       --------->SPL7             --------->AHL20(2)           ---------->DOF2 ---->RAV1(1)     <-----------RAV1(2)  --------->ICU4          ---------->DOF2     <-----------HVH21 ---ID1 ======================RAV      <---------YAB1     ----------->GT1---------->DOF2<---------DAG2   aaacaagaagcagcaaaagcccagacgacgaaaaagaagtgatgatgaaataatatgagaagattaaaagaaaatgaaagaaagttgtcacctttgctaa  1379100                                                                                              -------                                                                                      ----------->HVH21                                                                                      <---------SPL7                                                                                    *TSS <---------ANAC46                          ---------->DOF2                                    <---------YAB1   <------                    --------->AHL20(2)                                       <---------AHL20(2)                --------->YAB1   <---------AtMYB61     ---------->DOF2      --------->AHL20(1)<------               <-------TEIL    <----------DOF2       <---------YAB1         --------->AHL20(2)<------  <-----------GT1   <---------AHL20(2)    <----------DOF2                   <---------AHL20(1)-------   ctattcacccttgaatattcataaaaatgaaagctttggtttctctttgatggtgatgaaagagtgcatataagagaatataatgggagggacgcgtacg  1379200                                                                                             <-------                                                             <---------YAB1                  --------                                                    <---------At4g35610                 <---------AHL20(2)          <---------ANAC58                        <-----------RAV1(2)             <------NtERF2          <---------ANAC46                    <---------ARR14(2)                 <---------MYB46(3)          <---------ANAC58                    <---------ARR11(3)                --------->ALFIN1 <---------YAB1                               --------->ARR14(2)              <---------ANAC58 -->SPL7  <---------ANAC55(1)                 --------->ARR11(3)              <---------bZIP60(2) ---TOE1(2)                                  <------ZmHOX2a(1)  <---------YAB1<---------ANAC46 ---TOE2(2)         <---------YAB1 <---------ANAC46 --------->At4g35610       <---------ANAC58 -TEIL    --------->ANAC55(2)    ----------->GT1------>ZmHOX2a(2)    --------->MYB52(1)--------->AHL20(2) >TEIL    <---------ANAC55(2)  <------------CBF<------ZmHOX2a(2)----------->TBP <---------DEAR3(1)   ttgatgaatgatgcgtatgtgtatgaatgaatgaattgtgtaaatgaggatcccagatgaaagattataaataacagatggggtggctataaaataggtc  1379300                  ---------->DOF2            <---------AHL20(2)          <---------AHL20(2)       --------->AHL20(1)       <---------AHL20(1)       <---------AHL20(2)       <---------ARR11(3)       --------->ARR11(3)                                                          ----------->GT1  <---------AHL20(2)                                                             ----------->GT1  --------->AHL20(2)                                                         ---------->DOF2        - ---ID1--------->AHL20(2)                          --------->ICU4        --------->CCA1(2)       ---- --->GT1<---------AHL20(2)                         <---------ATHB51 <------ZmHOX2a(1)      --------->AHL20(2)   aaattttaatatatttttttcaaagggtgagagagaattgagctatataagaaataatgcaaaaatatgaggaagataagaaagagagaaaaattatatc  1379400                                                     <---------WRKY18(1)                                           ------>ZmHOX2a(2)                                          <------ZmHOX2a(2)                                         --------->AGP1                                         <---------AGP1                                         --------->ARR11(3)           <---------AHL20(1)           <-    <---------TOE2(3)                    <---------ARR14(2)           --------->AHL20(1)          <--  ---------->DOF2         <---------AHL20(2)       <---------WOX13(1) --------->ARR11(3)        <---- <---------AHL20(2)       --------->AHL20(2)    <---------YAB1       <---------AHL20(2)--------->ANAC55(2) -------->AHL20(2)       --------->YAB1  --------->ARR14(2)      <---------YAB1    <---------WOX13(1) ----------->AGL15 <-----------GT1       <---------ARR11(3)  <---------GLK1(2)   --------->ATHB12 <--   aatttaaaggaagaaaacaattttctattttaatacaaatatagatcttgaagattgaccacagattataaatattttgaaattgatttatgtattctat  1379500                                                               <---------AHL20(2)                                                              --------->AHL20(2)                                                              <---------AHL20(2)                                                           <---------ICU4                                                           --------->ATHB51                                                           <--------ATHB1                    <-------                                                           --------->YAB1             <-------GAMYB                                                           <---------AHL20(1)    <---------ARR14(2)                                                  <---------YAB1                 --------->ARR14(2)     <---------YAB1                              --------->AHL20(2)   --------->AHL20(2)     <------- <---------AHL20(2)        <---------WOX13(1)    <---------AHL20(2)   <---------AHL20(2)    <-------- --------YAB1            --------->ATHB12 <-----------GT1  --------->AHL20(2) <---------ANAC58 -------AHL20(1)        <---------YAB1 <---------AHL20(2) --------->ICU4      <---------ANAC58    --- -----YAB1     ----------->GT1        <---------AHL20(2)  <---------ATHB12    <---------ANAC46  <---- -------AHL20(2)     <---------TOE2(3)--------->AHL20(2)  <---------ATHB51   ---------->ID1<---------   tatttttttgataaatatagtttaatgtgattgaaacaaatttttttctatttttatacaataattttatatttattttgtcgtattcggttgtaaccgt  1379600        --------->WRKY38(1)        --------->WRKY12        --------->ZAT18                                 <---------AHL20(1)        --------->ZAT14                                 --------->AHL20(2)        <---------ZAT14                                 --------->AHL20(1) <-----------GT1                              <----------DOF2 -----MYB.PH3(1)                          <------------MYB.PH3(1)                                   < -----AtMYB77                            <---------At5g28300             --------->ANAC58          -- -At5g28300  ----------->HVH21          <---------DOF5.7(2)              --------->ANAC58        <--- ------>MYB52(2)                        <-----------GT1 <---------AHL20(2)                      ----- -----MYB52(1)                          --------->MYB52(1)    <---------TOE2(3)                <----- --GT1 --------->ALFIN1       --------->AHL20(2)       --------->AHL20(2)--------->ANAC46  <---------   tatttacgagtggaccggacaactaaaaactataaattgaattaacggttttatcgaataaattaagaaacatacaagaaaacttatacaatactttata  1379700  Previous    Next  AGI:  At1g04880.1    Description:  high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein. similar to high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G76110.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83439.1); contains InterPro domain High mobility group box, HMG1/HMG2, subgroup; (InterPro:IPR000135); contains InterPro domain High mobility group box, HMG1/HMG2; (InterPro:IPR000910); contains InterPro domain AT-rich interaction region; (InterPro:IPR001606); contains InterPro domain High mobility group box, HMG (InterPro:IPR009071) Range:  from: 1375960    to: 1379184    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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