Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      <---------TGA1a    --------->TGA1a    <---------O2    --------->O2    --------->ANAC58    --------->ANAC58  <---------ALFIN1 ------->PCF2 --------ZAT18 ------->ABI4(2) ---->NtERF2                                                    ---------->DOF2 --------ATERF1(1)                                            --------->ANAC58 ---->LBD16                                                   --------->ANAC58 --->LBD16                                                    --------->ANAC46        <-------TEIL ---LBD16                                          <---------YAB1           <<<<<<<<<<<<<<<<<LFY   gtgcccacgtctaaaacagtcttcatcacattacagaaacaacaattcaaactattaataccacaagaaagacagagagaccaatgggtacaacttcgca  1375300                                                        ---------->DOF2       <---------ANAC58                                                     --------->TOE2(3)        <---------ANAC58                                                     --------->TOE1(3)     <-----------GT1                                                   <---------TOE2(3)     --------->YAB1           <--                                          <---------ALFIN1              <---------YAB1        -------                                        ----------->RAV1(1)         <----------DOF2           <------    --------->GLK1(2)         ---------->DOF2      <---------TOE1(3)<---------DAG2     ---------->DOF2   atagataatctttcatcgactacaaacaaatagaaagtcttccaacacttgttaagcttaaagatgtgaactttattataccttgccctcaaagtgatgt  1375400                                                     --------->ARR14(2)                                                     <---------ARR14(2)                                                    <---------CCA1(2)              <-------GAMYB                         <---------GLK1(1)             <---------ANAC46                <------NtERF2             <---------DEAR3(1)            --------->ETT(1)   --------->HSFC1(1)                      <---------DEAR3(1)   <---------HSFC1(1)                    <-----------HVH21   <---------HSFB2a(2)              <---------ARR14(2)   --------->HSFB2a(2)              --------->ARR14(2)  <---------LBD16      --------->ANAC58--------->ANAC58     <-----------RAV1(1) -------MYB46(3)       --------->ANAC58--------->ANAC58  ------>ZmHOX2a(1)         <-------TEIL -->ICU4    <------NtERF2  <------------------SPL14 --------->GLK1(1)      <------ZmHOX2a(1)      --- ---YAB1  <---------DEAR3(1)    --------->SPL7     ---------->TaMYB80  <------ZmHOX2a(1)          <--   ttgttctggaagacggcgttgaagtaagcatccatacggacacggtcggagagcatatccttctggtggtataggaaggagtaagtacagaagtactgag  1375500                                                                          <------NtERF2                                                     <------NtERF2       --------->ABI4(1)                                                     --------->At4g35610 ------>NtERF2                                                  <---------MYB52(1)    --------->RRTF1(3)                                                 --------->LBD16        --------->DEAR3(1)                                                 ------>NtERF2          --------->RRTF1(2)                                                --------->ATERF1(2)     <---------DEAR3(1)                                        ------>NtERF2<---------At4g35610--------->RAP2.3(2)                             <---------DEAR3(2) <---------RAP2.6(2)     --------->RAP2.3(3)                           <------NtERF2--------->LBD16                --------->RAP2.3(1)                          ------>NtERF2--------->ANAC46                --------->DEAR3(2)                          --------->MYB52(1)    <---------ATERF1(2)    --------->ORA47(2)                         ----------->HVH21      <---------HSFB2a(2)    --------->ERF1<---------At4g35610                         --------->DEAR3(1)     --------->HSFB2a(2)    --------->DEAR4(2)                        --------->DEAR3(2)     <---------LBD16         <------NtERF2 --------->At4g35610                        <------NtERF2  --------->DEAR3(1)              --------->RAP2.6(1)                        --------->ATERF1(1)  --------->ARR14(2)        --------->ATERF1(1)                        --------->RAP2.3(1)<---------DEAR3(2)          --------->RRTF1(1)                       --------->At4g35610 <---------ATERF1(1)        <---------RRTF1(1)                 --------->At4g35610 <---------ATERF1(1)              <---------RAP2.3(1)                 <---------At4g35610 ------>ZmHOX2a(1)                ------>NtERF2  <---------GLK1(1)          <----------DOF2--------->RAP2.3(3) <---------ARR14(2)--------->MYB46(3)    --------->GLK1(1)   <---------WRKY45    <---------At4g35610 <---------MYB46(3) --------->ANAC46       <---------ZAT2   <---------WRKY38(1) <---------ATERF1(1)<---------DEAR3(1)<---------ALFIN1 <---------MYB52(1) ------>ZAT14    ----------->RAV1(2)<---------ALFIN1 <---------ZAT2   <---------ATERF1(1)      <----- -------ZAT14<-----------HVH21    ------>ZmHOX2a(1)  --------->ZAT2  <---------RAP2.3(2)  ------>ZmHOX2a(1)   cgtagtcaacttctttgtcaactggagccgacggtcctcctccgccggttccggcagctcgtccacccattgcgccgccgttttgggagctcctcatctt  1375600                                                                               ======================                                                                          <---------At4g35610                                                                          --------->At4g35610                                                                <---------AHL20(2)                                                              <----------DOF2  <---------TGA1a                                                              ===========================bZIP_DOF                                                              --------------->AGL15                                                              <---------------AGL15                                                             <---------------AGL15                                                             ----------------->AGL2                                      --------->LBD16        --------------->AGL15                                      ------>NtERF2          <-----------------AGL3                                    <---------LBD16         ----------------->AGL3                             --------->At4g35610     ====================================bZIP_DOF                             <---------At4g35610=========================================bZIP_DOF                         --------->ICU4<------NtERF2 <----------DOF2   ---------->DOF2  <---------At4g35610                  ---------->DOF2   --------->At4g35610  ---------->ID1==================bZIP_DOF -----DOF2     --------->AtLEC2----------->HVH21---------->DOF2 --------->AHL20(2)      --------->At4g35610   tgtttacacacttgttcttgcaaagtaatgcttctgactgcggcaaaaatcaaagctttgttccctttaattggaaagctgaagtgagagagctacagag  1375700                ---------->DOF2          --------->ATERF1(1)          <-----------------------TaNAC69(2)          <------NtERF2         <---------ATERF1(1)         ------>NtERF2        <---------DEAR3(1)        ----------->HVH21        --------->DEAR3(1)                                ---------->DOF2       --------->RAP2.3(1)                               --------->YAB1       --------->ATERF1(1)                          <---------ATHB12       <------NtERF2                                ------------>CBF      <---------DEAR4(2)                          --------->WOX13(1)                         --------      <---------ATERF1(1)                       ------------>CBF                       --------->YAB1      <---------RAP2.3(1)                       <---------ATHB12                    <----------DOF2     <---------DEAR3(1)                   --------->YAB1<---------ATHB12      <---------ALFIN1    --------->SPL7                       *TSS --------->WOX13(1)<----------DOF2------>ZmHOX2a(1) ==========================bZIP_DOF    <----------DOF2--------->WOX13(1)   <---------ALFIN1<---------ARR11(3)   ttttcagacggcgacggacaaagttcggaaacttagggttccttttataaatcaatcaatcaaagtctttaagtctccctcctccgctttcaaaatcata  1375800                                                                                              -------                                                                                           --------->YAB1                                                                                  --------->GLK1(1)                                                                                  <---------GLK1(1)                                                                                 <---------ARR11(3)                                                                                 --------->ARR11(3)                                                                                 --------->ARR14(2)                           <----------DOF2                         <-----------GT1<----------TaMYB80                          <---------ANAC58                    <---------AHL20(2) <---------ARR14(2)                          <---------ANAC58                    --------->AHL20(2) ---------->TaMYB80 -                 ------>NtERF2   --------->ANAC58          <---------GLK1(2)    <------ZmHOX2a(1) --- ->YAB1          ---------->ID1  --------->ANAC58    <----------DOF2       <-----------GT1--------->AHL20(2)   ttacagggattacttcttcggcccatttgctttccaagcccaagtttataaggccctttcagattttaatcaccaatttacaggatatcccattaataac  1375900        <---------GLK1(2)                    <---------ANAC58      <---------AHL20(2)          --------->TOE1(3)      --------->AHL20(2)          --------->TOE2(3) -->MYB52(1)                      --------->YAB1      --------->LBD16 ---------->GT1                <-----------GT1      <---------HSFB2a(2)                  ---------->DOF2 ------->DOF2            ----------->GT1     <---------ANAC58  ------------------------>ANAC81    ---   gaaagtaaaaaattctcttatgccaaaatgttataaccataaacttgccttgtttccgaagaaaaatccaaaaaaaccaaaaaaaaaaccaaaaagacat  1376000                    --------->At4g35610                    <---------At4g35610                   --------->ARR14(2)                                     ------->GAMYB          <---                   <---------ARR14(2)                                    <---------ANAC46        ----                  <---------GLK1(1)                          --------->ANAC55(1)                 ----               --------->ANAC58                              --------->ANAC55(2)                 ----           --------->ANAC58                                  <---------ANAC55(2)                 <---           --------->ANAC58                                  --------->ANAC46     --------->ANAC58       <-----------RAV1(2)    <----------DOF2                --------->ANAC58     --------->ANAC58 ------>GLK1(2)--------->ANAC58    ------>ZmHOX2a(1)         --------->ANAC58 ----------->GT1   <----   aatcttgggccagaagcaaggtatctgaagccctttcctctctctaacatttacctatggaacacgaaactggcaacggggagtaagaaacaagagaaga  1376100                         ------------>AtMYB77                         ----------->RAV1(1)                         <---------ALFIN1                      --------->DEAR3(1)                      --------->ANAC46                      --------->DREB2C(2)                     --------->MYB46(3)              <---------ZAT2              --------->ZAT14              <---------At4g35610         --------->At4g35610                                                                        <         <---------At4g35610  <---------MYB52(1)                                                    -     --------->ARR14(2)--------->ABI4(1)                                                        -----     <---------ARR14(2)------>NtERF2                                                            ----- ------ARR11(3)     <---------ATERF1(1)                                                        <----- ----->ARR11(3)     <---------At5g28300                            --------->YAB1             ------- ----->ARR14(2)    <---------WRKY38(1)                     <---------HSFC1(2)                <------ZmHOX2a(1) ----->GLK1(2)--------->At4g35610                        --------->ARR11(3)              ------>ZmHOX2a(1) ------ARR14(2)  <-----------HVH21  ---------->CDC5      <---------ARR11(3)        <-----------GT1 -- -----GLK1(2) --------->ZAT2 --------->ZAT2<----------DOF2 --------->HSFC1(2)   <---------MYB52(1)---   atcttcagttctgctcagcagtcaccgccacagttggctcatcggctttcttcaatggagatgtttccatcacaacatcgccgtttttctccttaggagc  1376200  Previous    Next  AGI:  At1g04870.1    Description:  protein arginine N-methyltransferase family protein. Identical to Probable protein arginine N-methyltransferase 4.2 (PRMT4.2) [Arabidopsis Thaliana] (GB:Q9MAT5;GB:Q8W552;GB:Q93Z15); similar to protein arginine N-methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G20020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65619.1); contains domain SSF53335 (SSF53335); contains domain PTHR11006 (PTHR11006); contains domain G3DSA:3.40.50.150 (G3DSA:3.40.50.150); contains domain PTHR11006:SF13 (PTHR11006:SF13); contains domain G3DSA:2.70.160.11 (G3DSA:2.70.160.11) Range:  from: 1373233    to: 1375741    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g04880.1    Description:  high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein. similar to high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G76110.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83439.1); contains InterPro domain High mobility group box, HMG1/HMG2, subgroup; (InterPro:IPR000135); contains InterPro domain High mobility group box, HMG1/HMG2; (InterPro:IPR000910); contains InterPro domain AT-rich interaction region; (InterPro:IPR001606); contains InterPro domain High mobility group box, HMG (InterPro:IPR009071) Range:  from: 1375960    to: 1379184    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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