Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                ------->GAMYB                             --------->MYB46(3)                             <---------ATHB12                            -------->P                            ------>MYB46(1)                            ------>MYB83                           ------>MYB46(1)                           ------>MYB83                         <---------MYB55(2)                         <---------MYB111(1)                         --------->MYB46(3)                         <---------MYB59                                                           --                        --------->ANAC58                                           <---------ARR14(2)                        --------->ANAC58  ------>MYB46(1)                          --------->ARR14(2)                        --------->ANAC46  ------>MYB83                         <---------At4g35610 --                       -------->P       <---------------AGL15            --------->DAG2            --         <------NtERF2 ------>MYB46(1)  <---------MYB59                 ---------->DOF2            --       <------NtERF2   ------>MYB83     --------->TOE2(3)           --------->ANAC58          -------      <---------LBD16 <---------ALFIN1  --------------->AGL15       --------->ANAC58 ------>ZmHOX2a(2) --------->DOF2   --------->ZAT18      ----------------->AGL2     --------->MYB52(1)<------ZmHOX2a(2)   ttcaaagtcgcggcatgaagagccctacccaaccatctaaaacctaatttagaattagacttgagtacaaacggaaaagttagccgatcgggtttcacac  1364600                                                                  ==================================HOX2a_HOX2a                                                                  ============================HOX2a_HOX2a                                                                  <------ZmHOX2a(2)                                                                 <-----------ARR10                                                              --------->ANAC46  --------->TOE1(3)                                           --------->ANAC58  --------->TOE2(3)                 --------->ANAC58          --------->ANAC58 ------->ANAC58                     --------->ANAC58         <---------LBD16                 ------>ZmHOX2a(1) ------->ANAC58            --------->DEAR3(2)              --------->MYB46(3)            <---------GLK1(1) ---->MYB83               ------->TEIL               <-----------HVH21                 <------ZmHOX2a(1) ---->MYB46(1)           <---------ARR14(2)          --------->LBD16        --------->AHL20(2) -->ANAC46               --------->MYB52(1)         --------->ANAC46---------->DOF2---------->DOF2   caagccttaacatgagaatgaaatgacgaaccgaagactcgaaacgagcattctccgtcaaaccacggatcaaagcatttaaaacaaaaggattcctctc  1364700                                                                                               ------                                                                                              -------                                                                                             --------                                                                   <---------At4g35610       ------>NtERF2                                                                   --------->ZAT2          --------->ATERF1(1)                                                                   --------->At4g35610    ------>NtERF2                                                                   <---------ZAT2         <---------RAP2.3(1)                                                              --------->At4g35610         <---------ATERF1(1)                                                              <---------ZAT2   <---------ARR14(2)                                                              <---------At4g35610      ==============                                                              --------->ZAT2  <------NtERF2<------NtERF2                                                          <-------TEIL       <---------ATERF1(1) <---                                                         --------->CCA1(2)--------->DEAR3(1)---------                                                         --------->ARR14(1)------>NtERF2 --------->ANAC58                                                        <---------ARR11(3)--------->O2 ==============                                  ------>NtERF2         --------->ARR11(1)<---------bZIP60(2)<------NtERF2                                --------->LBD16         --------->ARR14(2)<---------O2 <------ZmHOX2a(1)                               <---------LBD16          <---------ARR14(2)<---------TGA1a<---------DEAR3(1)                               --------->LBD16        ----------->ARR10----------->HVH21--------->SPL7                              <---------LBD16         --------->ANAC58 --------->DEAR3(1)--------->ANAC58  <---------GLK1(2)          <---------LBD16          --------->ANAC58--------->At4g35610--------->ANAC46   ttcagaatttctgaaaatcgagaggctataatccggggacttgagaagcgaagagcaagatacgagctgagcagcgacgcggctactgaggacgccgcga  1364800     ------>ZmHOX2a(2)    <------ZmHOX2a(2)   --------->ARR11(3)   --------->ARR14(2)   <---------ARR11(3)   <---------ARR14(3)                                                                               <   <---------AGP1                                                                      ----------->HVH21   --------->GLK1(2)                                                                 <---------ANAC58   --------->ARR14(3)                                                                <---------ANAC58   <---------ARR14(2)                                                           --------->ALFIN1   --   <-----------ARR10    ----------->ARR10                                      <---------MYB52(1)  --  <------ZmHOX2a(1)    <------NtERF2                                          --------->LBD16      <- >NtERF2  <---------ANAC58    <---------LBD16                                 --------->At4g35610 --- ---->HVH21          <---------ANAC46                      --------->CCA1(2)  <---------At4g35610<--- ->LBD16  <---------ANAC58 <---------ANAC58               <---------ARR11(3) <---------MYB46(3)<----- ===========HOX2a_HOX2a--------->ATERF1(1)    <---------ANAC58              --------->SPL7    ------>ZmHOX2a(2) ------ANAC46       <---------LBD16           <---------ANAC46            <---------SPL7     <------ZmHOX2a(2) >DEAR3(1)<---------ANAC46 <---------ANAC58   <---------ANAC58            <-----------HVH21 <-------- ==========HOX2a_HOX2a--------->LBD16 <----------DOF2     --------->ARR11(3)<---------LBD16 ---------   cggaggatctgggcgtgaacatggcggagacttgcggtgtctttacaggcgtgaatcagagatatgaagtgagactcgtccggtgaggcttgacgatcgg  1364900                                                                                                 <---                                                                                                <----                                                                                             ------>ZmHOX2a(2)                                                                                            <------ZmHOX2a(2)        --------->ARR11(3)                                                                 <---------AGP1        <---------ARR11(3)                                                                 --------->AGP1 ------NtERF2                                                                              --------->ARR14(2) ------->LBD16                                                                             --------->ARR11(3) --------->GT1           <---------GLK1(1)                     --------->TOE2(3)           <---------ARR11(3) -----NtERF2            --------->ARR11(3)                 <---------SPL7                  <---------ARR14(2) ------>RAP2.6(2)       <---------ARR11(3)                --------->TOE2(1)               --------->At4g35610 ------LBD16   <---------ANAC58               --------->DAG2 ------->TEIL                 <---------CCA1(2) ----SPL7      <---------LBD16               ---------->DOF2 --------->SPL7            <---------At4g35610 -ARR14(2)     <---------ANAC58         --------->MYB52(1)--------->TOE1(1)          --------->YAB1 >ARR14(2)    <---------LBD16        --------->YAB1      --------------->AtSPL8   --------->WOX13(1)   ccggaaaatagattttagcgggagaagatttcggtttaaaaataacagaaagcgatttcatcgtacctcagtcaaaacgctcatcagtcatcagatctcg  1365000                                                                                      <---------WOX13(1)                                                                                     <------------CBF                                                                                    --------->MYB52(2)                                                                                    --------->ATHB12                        <---------ANAC58            <-----------GT1               <---------MYB52(1)<                 <---------AHL20(2)           --------->LBD16         --------->AHL20(1)           <-                <---------AHL20(1)          <---------LBD16           --------->ARR11(3)    <--------                --------->AHL20(1)     --------->YAB1                 <---------AHL20(1)   <---------SPL7    ---------->DOF2     <---------ANAC58  <-----------GT1             <---------ARR11(3)  <---------ANAC58 ------DEAR3(1)<---------CCA1(2)       --------->TOE1(3)             --------->AHL20(2)   <---------ANAC58 -----LBD16   <-----------------AGL3   --------->TOE2(3)  <------------CBF      ----------->GT1   <--   cggtgcaaaagactcttatatatttggctagtggctacttatcttaaccggattaaaccgtattgctctaaatatatcaaaccggttaattggcgaaccg  1365100                                                      --------->ANAC58                                             <-----------GT1                                        ---------->DOF2                                    --------------->AGL15      ---------->DOF2               --------->TOE2(3) --------->ANAC58                              -    --------->ANAC58                --------->TOE1(3) --------->ANAC46                          -----    --------->ANAC58               ----------------->AG                                         <---- -----------RAV1(2)                ----------------->AGL1                             <----------DOF2 ------TEIL                        ================================================================== -ARR14(2)                       <-----------GT1  --------->AtLEC2                  <---------HSFC1(2) ---------HVH21             <---------AHL20(2)------------>CBF--------->MYB52(1)    --------->HSFC1(2)   gttcagacgaaagcagtatggaaatgtcattttttttaccttaaaagttacaatgcaaacaacaagacggattaaacagtaatggaagcttttagttctg  1365200                                                                  <---------ARR14(2)                                                    <---------YAB1--------->ARR14(2)              --------------->AGL15          --------->STY1(2)   --------->GLK1(1)        <-----------GT1        ---------->DOF2   --------->ICU4  <---------GLK1(1) ---------------------->TaNAC69(2)           <---------STY1(2)   --------->CCA1(2) ---->At4g35610      --------->ANAC58       --------->ANAC58    --------->ARR11(3)     --------->YAB1 -----At4g35610      --------->ANAC58       --------->ANAC58    <---------ARR11(3)    <-------TEIL =============================MADS_MADS <-----------GT1  --------->YAB1    <---------AHL20(2)   ctctccaaattttccacttatttaagcaaaacaaaaagaatgtcactagccagtattattcatagagatatccgaatttttttttagtttcataagaaga  1365300                             <---------MYB46(3)                             --------->MYB111(2)                     --------->YAB1                      ---------->DOF2                               <---------YAB1                  ---------->DOF2       <------NtERF2     <---------ZAT2             --------->GLK1(1)         --------->LBD16    ----------->RAV1(2)            <---------ARR11(3)       <---------LBD16      <---------At4g35610       ------>ZmHOX2a(2)            --------->ARR11(3)<-------GAMYB               --------->At4g35610       =================        ---------->DOF2      --------->MYB55(2)           --------->ZAT2          --------->ARR11(3)       <---------AHL20(2)   <--------P<---------ANAC46  <-----------RAV1(2)       <---------ARR11(3)   ggcatggatttaaagaactccaaagaaagggttgttgatggcggagttgagttctgttccagctgagtttatgatggctgaatcgatcttgtctctaggt  1365400                                                                                    ------>ZmHOX2a(1)                                                                               <----------DOF2                                                                           -------->P                                                                           ------>MYB46(1)                                                                           ------>MYB83 <-----------GT1                                                                         --------->AtMYB61                 ------>ZmHOX2a(1)                                       <---------MYB111(1)              ------>ZmHOX2a(1)<---------ARR14(2) --------->ZAT6        <---------MYB55(2)      <---------ARR11(3)       --------->ARR14(2)------->TEIL           --------->MYB46(3) ====================HOX2a_HOX2a    --------->ANAC46       ------>NtERF2--------->DEAR3(2)   aagaacaagaactctcctccttcaattttctcaaatccacatagctccatgaactctatgccccctcttagcgaaccaaccctttcctgtttacattttc  1365500  Previous    Next  AGI:  At1g04840.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G08070.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO50073.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 1362866    to: 1364961    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g04850.1    Description:  ubiquitin-associated (UBA)/TS-N domain-containing protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G48690.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO50090.1); contains InterPro domain Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain UBA-like (InterPro:IPR009060); contains InterPro domain PUG (InterPro:IPR006567); contains InterPro domain Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449) Range:  from: 1365117    to: 1368843    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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