Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         --------->TOE1(3)                                       --------->TOE2(3)                                       <---------DAG2                                             ===                                       <---------------AGL15                                      ---                                       --------------->AGL15                                     ====                                      ----------------->AGL3                                     <---                                      <-----------------AGL3                                     ---- ---->GAMYB                           ----------------->AGL2                                    ----- ->At5g28300                          <-----------------AGL2                    <---------ANAC58<---- ->DOF5.7(2)                        <-----------GT1                  <---------ATHB12       --------- >MYB.PH3(1)           <-----------HVH21                 <------ZmHOX2a(1)      <---------ANAC58<----   ccgagagaaacaagagaatggtctcggtcagagtttagttaccttatatagatcgatgaggacattgtctaatgactcttgagcttgtcttgaacaaaga  1337400      <------ZmHOX2a(1)  ---------->DOF2 ============HOX2a_HOX2a                    <---------MYB52(1) --->ZmHOX2a(2)                  --------->At4g35610 ============HOX2a_HOX2a <---------ANAC58  <-------GAMYB ---ZmHOX2a(2)           <---------ANAC58 <-----------RAV1(1) ----->GLK1(1)     <---------WRKY12   --------->ZAT14                      <---------ZAT14 ---->ARR11(3)   <-----------HVH21    <---------ZAT14                      --------->ZAT14 -----ARR11(3)  <---------ANAC58 <---------ZAT2                            --------->ZAT18 ->DOF2         <---------ANAC58 --------->ZAT2    --------->TOE2(3)       <---------ZAT18 -----AGP1      <---------ANAC46 <---------At4g35610                <----------DOF2               <--   tctctaaaggattgaatagcgtcaatggcttcttcagctctgttctgttgtttcattaacaaggccatgtctttaagagcactatcaactctatctctcg  1337500                                                              --------->YAB1                                                             <---------ATHB12                                                            ------>MYB46(1)                                                            ------>MYB83                                                     ------->GAMYB                                                   ------>MYB83--------->TOE2(3)                                                   --------->At4g35610                                                   ------>MYB46(1)                                                   ----------->RAV1(2)                                                  --------->MYB52(1)                                                 <---------MYB111(1)                                                 <---------MYB55(2)                                                 --------->MYB46(3)                  --------->ICU4                                                 <---------MYB111(2)       <---------ARR11(3)                                        <----------DOF2   <---------MYB59  --------->ARR11(3)                                     ------->TEIL--------->AtMYB61         <-----------ARR10 --------DOF2                <---------At4g35610--------->MYB46(3)        <---------GLK1(2)   ctttaatcgctatccaaaacaactctatcgctgcttctgcatctttctccaccaactgaaccaaacatcaaatccaaaatctcagtaaaaatcaatataa  1337600                                           --------->TOE2(3)                                           --------->TOE1(3)                                        <-----------GT1                                   --------->AHL20(2)                           <---------MYB52(1)                                   <---------AHL20(2)                          <-----------HVH21               --------->DAG2      <---------AHL20(1)                          --------->LBD16              ---------->DOF2     --------->AHL20(2)                       <-----------------AGL1  XX       <----------DOF2        ------->TEIL----------->RAV1(2)        <------ZmHOX2a(1)          <----   actcgattcctttggataaagtcacacatatgtatattaaatttacctgaacatgcttcgctcggacataaggactgtctccgtgaggcaacttatggac  1337700                  <---------TGA1a                  --------->O2                  <---------O2                  --------->TGA1a                ------>NtERF2               --------->DREB2C(2)               --------->DEAR3(1)               ----------->HVH21               --------->RAP2.3(3)              --------->RRTF1(1)              --------->DEAR3(2)              --------->RAP2.3(1)              --------->ORA47(2)              <------NtERF2              --------->ERF1              --------->ATERF1(1)             --------->At4g35610             <---------At4g35610             --------->ABI4(1)             ------>NtERF2             <---------ATERF1(1)            --------->RAP2.3(2)            <---------ATERF1(2)            --------->ATERF1(2)            --------->RAP2.6(2)            --------->RRTF1(2)            --------->RRTF1(3)            --------->RAP2.3(3)            --------->DEAR3(1)            <---------DEAR3(1)           --------->RRTF1(1)           --------->RAP2.6(1)           --------->ORA47(2)           --------->ERF1           --------->DEAR4(2)           <------NtERF2           --------->ATERF1(1)           --------->RAP2.3(1)          <---------ATERF1(1)          <---------DEAR4(2)          <---------DREB2C(1)          ------>NtERF2          --------->ABI4(1)          <---------At4g35610          <---------RAP2.3(1)          --------->At4g35610         --------->DEAR3(1)         --------->RAP2.3(2)         <---------DEAR3(1)         --------->RAP2.3(3)         --------->ANAC46        --------->ORA47(2)        --------->ATERF1(1)        --------->RAP2.3(1)        --------->ERF1                                      <---------ICU4        --------->RAP2.6(1)                                <---------YAB1       <---------ATERF1(1)                               <---------ICU4               <--------------      --------->ANAC58                                   --------->YAB1               ---------------      --------->ANAC58     ---------->ARF1            --------->YAB1                 ================      --------->ANAC46 <---------ANAC58               <---------ICU4                 ----------------     --------->SPL7    <---------ANAC58------>ZmHOX2a(1)<---------YAB1               <---------------   <---------SPL7<------NtERF2  <---------ALFIN1     <---------YAB1     <---------ANAC46 XXXXXXXXXXXXXXXXXX>MIR4228<---------CCA1(2)       --------->YAB1       <---------ANAC58          --- -----WRKY38(1)--------->At1g77200 <---------ALFIN1<---------ICU4       <---------ANAC58          <--   aacgttgtacgccgccgccgacgagtcttgtctctcacctcctcttctctgaatcatcatcatcatcgcaaacttcgtgtctctgtttctaaatgaagaa  1337800                                                                         <------------CBF                                                                       <---------AHL20(1)                                                                       --------->AHL20(1)                               ------>MYB83                            <---------AHL20(2)                          <---------ALFIN1                            --------->YAB1                       ----------->HVH21                              <---------AHL20(2)                      <---------MYB52(1)                        --------->CCA1(2)   <----------DOF2   --------->LBD16                           <---------ARR11(3) -AGL15              ----------->GT1                           --------->ARR11(3) >AGL15            <---------LBD16<----------DOF2   --------->ALFIN1  --------->AHL20(2) =============================MADS_MADS           <---------ANAC58 --------->YAB1 ->AGL3       ------>ZmHOX2a(1)------>MYB46(1)    <---------ANAC58--------->AHL20(2) --AGL3       <---------------AGL15               <---------ANAC46<---------YAB1 ------>HSFB2a(1)<---------ARR14(2)               --------->ALFIN1<---------AHL20(2)  >>>>>>>>>TBF1 -------HSFB2a(1)--------->ARR14(2)             *TSS<---------ANAC46 <---------YAB1>>>>>>>>>TBF1   accttctttatctctcctaaatccggtaacaccttcctttctctctctaggggtgtgtgaagaaagatataattatattgtggaagaagaagaaggaacc  1337900                                                                                                -----                                                                                        ------->TEIL                                                                                        --------->SPL7                                                        ---------->ID1                <---------SPL7                                                    ===========================================MYC_MYB                                     ------>ZmHOX2a(2)<------MYB46(1)                --------->ANAC58                                   --------->ARR14(2) <------MYB83                   --------->ANAC46                                   <---------ARR14(2)<---------MYB46(3)              --------->TGA1a                                   <---------ARR11(3)<---------AtMYB61               --------->ANAC55(2)                  <-------TEIL--------->At4g35610   <--------P                       --------->ANAC58     --------->GLK1(2)        <---------At4g35610  <---------ZAT2                    <---------ANAC55(2)    --------->ARR14(2)      <---------WRKY12   <---------LBD16                       --------->bZIP60(2)    <---------ARR14(2)     --------->DOF5.7(2) --------->LBD16                      --------------->AtSPL8    <---------GLK1(2)     --------->TOE2(3) <---------At5g28300           <---------AHL20(2) --------  ----------->ARR10  <---------YAB1<---------AGP1 ------>NtERF2          --------->AHL20(2)  <-------   tagacagattctcgtcttggttcattatcgtcaactggatctaaaataccgcgggctggtcgtttttctaacctataaaatagtgccacgtaccctatcc  1338000                        <---------TGA1a                        --------->O2                        <---------O2                                                               --               --------->ANAC58                                                                   ---     <---------ICU4   ------>NtERF2                                                     --------->MYB52(1) ---->ANAC46   --------->ANAC46                       <-----------ARR10                 ---------->DOF2 ->ARR14(2)    --------->ANAC58                  <-----------GT1             ---------->ID1------->GAMYB --ARR14(2)  --------->ANAC46             ---------->ID1       --------->LBD16  ------>ZmHOX2a(1) ---   gtccccattattctcacacgactccgacttggccagttttttttgtttttttttcaaatctagtccgtagttgttatttgtcctcataaataacgcccat  1338100                                                                                                   <-                                                             <---------RVE1(1)              <--------                                                             <---------CCA1(1)         ----------->GT1                                                            <---------ARR11(3)         <---------MYB46(3)                                                            --------->ARR11(3)    ---------->DOF2  --            <---------At4g35610--------->TOE2(3)            <---------AHL20(1) --------->HSFC1(1) <--            --------->At4g35610--------->YAB1               --------->AHL20(1) <---------HSFB2a(2)<-- ---->ZmHOX2a(1)            --------->YAB1          <----------ID1             <---------HSFC1(1)<--- ------>TOE2(3)             <-----------GT1       ---------->DOF2   >>>>>>>>>>>>>>>>>LFY   --------->KAN4(2) ------>TOE1(3)      ----------->GT1     ----------->GT1---------->DOF2        --------->HSFB2a(2)---   ccttaactatattctgctgaatgtagttaataaccatattgttttgtaaaaaaaaagaaaaagatatttcgcccattgtttctagaaagtggttattcta  1338200 --------ICU4 -YAB1                                  <---------ATHB12 ------->ATHB12              --------->AHL20(2)         ---------->DOF2 <---------AHL20(2)     <----- -------YAB1                 <---------AHL20(2)        --------->AHL20(2)                    -------- -------ATHB12           <---------AHL20(2)    <-----------GT1     --------->AHL20(2)  <---------ARR11(3) ------TOE2(3)        ------->TEIL    <---------At4g35610          <---------AHL20(2)  --------->ARR11(3) ------>ICU4       ----------->GT1   <---------TOE1(1) <---------AHL20(2)        ----------->GT1  <--   atgatttgtcgataattcaaaatgtatataaaaaattgtccgatgattttttccaaattaaagtctgattttatttttttgactagtaaaatctattatg  1338300  Previous    Next  AGI:  At1g04770.1    Description:  male sterility MS5 family protein. similar to male sterility MS5 family protein [Arabidopsis thaliana] (TAIR:AT5G48850.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96519.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Tetratricopeptide TPR-1 (InterPro:IPR001440); contains InterPro domain Tetratricopeptide region (InterPro:IPR013026) Range:  from: 1336370    to: 1337848    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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