Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             <----------DOF2          <---------ANAC58                                                                   --------          <---------ANAC58                                        <---------CCA1(2)      <---------At4g35610      <---------At4g35610                                     --------->GLK1(1)          --------->At4g35610     <---------YAB1                                          <---------ARR11(3)          <---------ZAT2  --------->GLK1(2)          --------->ICU4                  --------->ARR11(3)          --------->ZAT2 ------>LBD16     --------->YAB1   ----------->GT1     --------->ZAT6               ----------->HVH21   cgaaattctgatgctttcaaacagaattgacattatgcagtaatacatactaagttaacacaagatttctatcttcaaactcgatagtgacagctgtgga  1286200                                                               <---------AHL20(2)                                                     <---------ARR14(2)                                                     --------->ARR14(2)                        ------                                                     ------->TEIL                             ------>ZmHOX2a(2)                                                     <-----------ARR10                      ---------        --------->ANAC58                             <---------ARR11(1)                     ---------        --------->ANAC58                             --------->GLK1(2)                  <---------LBD16     <---------ATHB12                               <---------GLK1(2)          <---------TOE2(3)   ------>MYB83                                     <---------CCA1(2)         <---------DOF5.7(2)----   ------>MYB46(1)   <---------ICU4    ---------->DOF2 --------->TOE2(3)   <----------DOF2  <-------- <---------MYB59     --------->YAB1  <---------HSFB2a(2)      --------->AHL20(2)   ------->TEIL<----- ->ALFIN1<---------ATHB12  --------->ZAT6           <---------ARR14(1)  <<<<<<<<<NAM   <---------LBD16   agaccaaatcaagcattcgacaaacattaccactatgttcgaaaagaaaactccgaatcttagataaaatttcatccctttaacgaatttcagggatcgg  1286300                                                       ----------->GT1             <---------TGA1a                                                     --------->ALFIN1              <---------bZIP60(2)                                                   <---------ANAC58                --------->TGA1a                                                   <---------TGA1a                 <---------ANAC58                                                   ==============================bZIP_DOF                                                   <---------ANAC46                <---------O2                                                   <---------O2                    <---------ANAC58                                                   --------->O2                    --------->O2------                                                   <---------bZIP60(2)   ====================bZIP_DOF                                                   ==============================bZIP_DOF      <----- ----->GT1                                         --------->TGA1a       ---------->DOF2       ------ >ARR14(2)                                         <---------ANAC58   --------------->AGL15    <----- --->MYB.PH3(1)                                  ============================================MYC_MYB ----->ARR14(2)                                  ------->GAMYB        <---------------AGL15   ------- -ARR14(2)                <----------DOF2     --------->MYB52(1)      <----------DOF2--------->ALFIN1 ----MYB46(3)             ===================================bZIP_DOF =======================bZIP_DOF   ttacactgaaattttgtataagacgggtcttttaaaaaactgaagaatcaacgacgtgtgtaaaacagagtgctataaagagaagacgtggcagaaataa  1286400                                                                                        <---------MYB46(3)                                                                                       <---------YAB1                                                                                     <---------ICU4                                                                                     --------->YAB1                                                                                    --------->ICU4                                                                                    <---------ATHB12                                                                                    <---------YAB1                                                                                  --------->YAB1                                                                           <---------bZIP60(1)                                                                           --------->ETT(2)                                                                           <---------TGA2(1)      <---------DAG2                                                       --------->bZIP60(1)  <---------At4g35610                                                      --------->TGA2(1) --->AHL20(2)                --------->DOF5.7(2)                           <---------ETT(2) ----AHL20(2)              <---------ZAT6                               ----------->HVH21 --->AHL20(1)        >>>>>>>>>TBF1 <---------LBD16                    <---------At4g35610       ----- ----AHL20(1) --------->ANAC58 --------->MYB52(1)      <------ZmHOX2a(1)----------->TGA1--------->ATHB12 -->AHL20(2)  --------->ANAC58 <---------DOF5.7(2) <------ZmHOX2a(1)  --------->At4g35610       -----   attgagcacctttggaacgcgaagaagaagagttaacgacggagaagactggaggaaggagagagagcctggaggtgacgacagtaatcatggttgccca  1286500                                                                                               ------                                                                  <----------DOF2              ------                                                                 <---------ANAC58            <-------                                                       <---------CCA1(1)           *TSS  <------ZmHOX2a(1)                                                       <---------RVE1(1)        <---------ARR11(3)                                                      <---------ARR11(3)        --------->ARR11(3)       ------------------------>ANAC81                --------->ARR11(3)       <---------CCA1(2)    ------------------------>ANAC81       ----------->GT1  <---------AHL20(2)  --------->GLK1(1) ---->ANAC58                      <---------ZAT14     <---------ARR14(2)       <---------GLK1(1) ---->ANAC58------------------------>ANAC81    ---------->DOF2   <---------ANAC58  <----------DOF2   gccagagaagaagagaagaagagaagaagagaagagagtagagagagagaaaagaagatatttttttgcttttgaacttggatatcttttaggaaccaaa  1286600                                                                               <---------AHL20(2)                                                                               --------->AHL20(2)                                                                              --------->YAB1                                                                             <---------YAB1                                                                       <---------AHL20(2)     ------------>CBF                                     <----------DOF2 <---------YAB1         <--- >MYB46(1)      <---------LBD16                     <---------LBD16    <---------YAB1       --------- >MYB83       <-----------GT1                    <-----------HVH21  <---------AHL20(2)     --------->DAG2 --MYB59   --------->TOE2(3)        <-------TEIL<----------DOF2     --------->AHL20(2)    ---------->DOF2   cttgataaccaattcttaaccggactgaatggttttggttcgtaagagctctttcacgggctttctccatttttttattattaaaatttttaaaaagtta  1286700                                                                                     <---------YAB1                                                                                    <---------AHL20(2)                                                                                    --------->AHL20(1)                                                                                    <---------AHL20(1)                                                                                   <---------AHL20(2)                                                                                --------->YAB1                                                                                <---------ICU4                                                                               --------->ICU4                                                                               <---------AHL20(2)                                                                               --------->AHL20(2)                                                                               <---------ATHB51                                                                              <---------AHL20(1)                                                                             --------->YAB1                                                                           --------->AHL20(2)                                                                          <---------AHL20(2)                                                                         --------->AHL20(2)                                                                     <---------AHL20(2)                                                                    --------->AHL20(1)                   --------->YAB1                                   <---------AHL20(2)             <---------AHL20(2)                                     --------->AHL20(2)            <---------AHL20(2)            --------->YAB1            <---------AHL20(1)         <-----            --------->AHL20(2)     --------->At4g35610         --------->AHL20(1)  --------->AHL20(2) ------YAB1 <---------AHL20(1)     <---------At4g35610         --------->AHL20(2)  --------->YAB1 -->GT1 <---------AHL20(2)    --------->YAB1<---------YAB1     <---------AHL20(2) <---------YAB1 ----   taagagagttttaattttttttcatattctaatggtaagctctcttataagagttttctgaaaaataaaataaaatttaaaataattatatttcatataa  1286800                                                                                         xxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                             <---------ANAC55(2)                                                                             --------->ANAC46                                                                             --------->ANAC55(2)                      --------->ARR11(3)                                     --------->ANAC58                      <---------AHL20(1)                                     --------->ANAC55(1)  xxx         --------->YAB1                                              --------->AHL20(2) xxxxxxxxxxxxx         ----------->GT1   <-----------GT1                   --------->CCA1(2)      <---------TOE2(3)     <---------YAB1   --------->AHL20(1)                    --------->ARR11(3)     --------->MYB52(1)   <---------ICU4     --------->ICU4  <---------AHL20(2)    <---------ARR11(3) <xxxxxxxxxxxxxxxxxxxxx   <-----------GT1    <---------ARR11(3)                    --------->ARR11(1)<xxxxxxxxxxxxxxxxxxxxxx ------GT1   --------->WOX13(1)     <---------AHL20(2)  ---------->DOF2      --------->ANAC58     --- ----->TOE2(3)  --------->YAB1   --------->AHL20(1)   <---------TOE2(3)     <---------LBD16       <--   cttaataactattgtaaatcagaaaatattaaacatatattattttgaaacattttaagaaagatatgaaaataaaaacacggaataacgataagttctg  1286900          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <-----------RAV1(1)  <---------MYB46(3)  --------->MYB52(2) ----------->GT1 xxxxxxxxxx>smallRNA(si3) xxxxxxxxxx>smallRNA(se3) xxxxxxxxxx>smallRNA(le3)                                                                        ---- xxxxxxxxxx>smallRNA(s2)                                                                      ------- xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                       <---------ZAT14 xxxxxxxxxx>smallRNA(si3)   --------->YAB1                                                ---------->DOF2 xxsmallRNA(si3)  --------->ATHB12                                               <---------AHL20(2) xsmallRNA(se3)---------->DOF2<----------ID1             <---------GLK1(2)   <---------AHL20(2)  <--- ------>ETT(2)<---------AHL20(2)                --------->YAB1     <---------AHL20(2) <------ZmHOX2a(1) -------ETT(2)--------->AHL20(2)            ---------->DOF2       --------->AHL20(2)<---------TOE2(3)   tcgattgttgcaaaatttaaagattgaaaataagaacaaattgttttaaagaataacaagattgtcgattaaatcggttttaatttaaggactaaagtga  1287000       ---------->DOF2         <---------YAB1                                                 -------  ----------->GT1            --------->YAB1                                          --------->MYB52(1) ----->ICU4                 <---------YAB1                                         ------>ZmHOX2a(1) ---->GT1                <---------YAB1                      <-------TEIL         --------->TOE2(3) ------YAB1              --------->ICU4            <---------CCA1(2)              --------->TOE1(3)   taatttgtataaagtataagctctgatatgattataagtgactctattgctatatatctgaaattcatcttcttgtttctgtctccttaactgaatccat  1287100  Previous    Next  AGI:  At1g04620.1    Description:  coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family. similar to hypothetical protein OsI_010874 [Oryza sativa (indica cultivar-group)] (GB:EAY89641.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ64780.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71522.1); contains InterPro domain Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal (InterPro:IPR007525); contains InterPro domain Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal (InterPro:IPR007516) Range:  from: 1282740    to: 1286583    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version