Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       <---------DAG2          <---------At4g35610        --------->TOE1(3)                        --------->YAB1         ------->TEIL                <---------MYB59                        ------>MYB46(1) -------->DOF2                 <----------DOF2                    ------>ZmHOX2a(1) ----At4g35610      ------>ZmHOX2a(2)--------->TOE2(3)          ----------->RAV1(2)         --------- --->At4g35610 <---------WOX13(1) <-----------GT1   ----------->GT1         ------>MYB83   <---------ATHB12   agaaagaaatgaagctaattgatccaatctgagcttttaccttattccattggaatgagaaaacactcctggctcacctacaataagtttcaaatcataa  1261000                                                                              --------->At4g35610                         <-----------RAV1(2)                                --------->YAB1                       -------->P                               <---------AHL20(2)             <-----                 --------->ARR11(3)                             --------->AHL20(2)          ---------     ------>NtERF2 --------->AtMYB61           <-----------GT1 <---------AHL20(2)           <-------- >YAB1           <---------ARR11(3) --------->GLK1(2)          --------->AHL20(2)   ---------->DOF2   gagactccgactatatgaagacctcaaccaggttacacaatctagcatttcacatttgtatgcaatttaatcaacttatcagaagaaaaagagagacctt  1261100                                                                                               ------                                                                                             <-------                                      <---------ICU4       --------->ARR14(2)               ------>MYB83                                <-----------GT1     --------->At4g35610                   <---------MYB59                            <---------AHL20(2)      <---------At4g35610                  --------->MYB46(3)                           <---------AHL20(2)       --------->ZAT2              --------->ANAC58 -----DOF2                 --------->AHL20(2)  <---------GLK1(1)                --------->ANAC46 >ARR11(3)             <---------AHL20(2)      --------->GLK1(1)           --------->GLK1(2)------>MYB46(1) -ARR11(3)             --------->AHL20(2)<-----------GT1   <---------ARR14(2)   --------->ANAC58   tcaaagttttacagaaattgtctacttaattaaatgaccatttttacagaaatcagctccaaattcgaaacttagagattccaagtcagtaaccaaacat  1261200                                                                        <-----------GT1                                                                    <---------ICU4                                                                    --------->ATHB51                                                 --------->YAB1  --------->TOE1(3)                  -                                                <---------YAB1   --------->TOE2(3)     ------>ZmHOX2a(1)                         <----------DOF2     <---------AHL20(2)  --------->YAB1     ------>ZmHOX2a(1) --->TOE2(3)    --------->LBD16            ------->TEIL        -------->P  <-----------HVH21        < --ATHB12     <---------LBD16         --------->MYB52(1)   --------->YAB1  <-----------TGA1 <--------   tagagtgctatcttcttccgcattaaacttttaagtatacaaacgaatttatcatgagcaatactaaccataattttcgtcacatcctcctccaatgaag  1261300                                       <---------GLK1(1)                                  <---------MYB52(1)                                 <-------GAMYB                               <------NtERF2                               --------->RAP2.3(1)                              <---------RAP2.3(1)                              <---------ATERF1(1)                              ------>NtERF2                              --------->ABI4(2)                             <---------DEAR3(1)                             --------->DEAR3(1)                       <---------At4g35610                            --------->RAP2.3(1)                     --------->HSFB2a(2)                           ------->GAMYB                            <---------HSFB2a(2)                           <---------RAP2.3(1)                  <----------DOF2         <---------At4g35610<---------ABI4(2)                 ------>NtERF2       <------ZmHOX2a(1)   <---------ANAC58     --------->MYB52(1)              --------->MYB52(1)     <---------HSFB2a(2)   <---------ANAC58     <---------DOF5.7(2) <-----------RAV1(1)<------NtERF2   --------->HSFB2a(2) -------->GLK1(1)     <---------MYB52(2)  <---------ANAC58   <---------ANAC46  <---------HSFC1(1) ---------GLK1(1)    --------->At4g35610  <---------ANAC58 ------->GAMYB       --------->HSFC1(1)   < -ATHB12 --------->At4g35610--------->ATERF1(1)       <---------MYB52(2)       >>>>>>>ZML2<---------ZAT14   agatttcttgctgctgaaatagaagctaacggcgccgttagatttcttgttgcgctactaacggcgcgtttcagaagcgttctaggaattagagaactga  1261400                                           <---------ANAC58                                           <---------ANAC46                                           <---------ANAC58                              ------>MYB46(1)                              ------>MYB83 ----------->GT1                            --------->TOE1(2)                            --------->TOE2(2)             <---------DEAR3(1)         <---------DEAR3(1)  --------->LBD16          --------->DEAR3(2)  ------>NtERF2            --------->MYB46(3)         --------->ALFIN1          <---------YAB1      - --------->ANAC58        *TSS--------->MYB52(1)   <---------TOE2(3)        ----------->GT1      ----- --------->ANAC46     --------->HSFB2a(2) <------NtERF2                    <---------ZAT6    -------- --------->ANAC58     <---------HSFB2a(2) <-----------------------TaNAC69(2)   ------------>CBF ----- ---------LBD16  --------->ABI4(2)     --------->ATERF1(1)            --------->YAB1        ---------   aacccgccattggagacggtgctacgagaaccaacgaagacggaggcgtattaagggaggggttttcagaaatgatactgttacaattagcccattaata  1261500                                                     ------>ZmHOX2a(2)                                                     <-------TEIL   <------------CBF                                 <------ZmHOX2a(2) --------->AHL20(2)                                <---------ARR14(2)          --------->REM1(2) --------->AHL20(1)         --------->HSFC1(2)     --------->ARR14(2)         --------->ALFIN1 <---------AHL20(2)         <---------HSFC1(2)     <---------AGP1             <---------REM1(1) -------->AHL20(2)          <---------HSFB2a(1)    <---------ARR11(3)        ------->MYC3 ---->AHL20(2)        ---------->DOF2              --------->ARR11(3)        <-------MYC3 ->YAB1          --------->YAB1     --------------->AGL15            ----------->GT1 ---->YAB1    --------->YAB1--------->HSFB2a(1)   <---------GLK1(1) ----------->GT1          -------- >AHL20(2)   --------->AHL20(2)     <---------------AGL15           <---------YAB1        <---------TOE2(3)   aaaaaaattggcccattaataacaaaaagaagcttcttctctatgtagtagtagatccgttgaaatagagatgataaaacgtgtagcccattaagaaaag  1261600                                                                                     --------->DAG2                                                                                    --------->DAG2                                                                         ----------->GT1                                                                        ------>ZmHOX2a(2)                                           ------>ZmHOX2a(2)           <------ZmHOX2a(2)                                           <-------TEIL               --------->ARR14(2)                     <---------HSFC1(2)   <------ZmHOX2a(2)           <---------ARR14(2)----------->GT1                     --------->HSFC1(2)  --------->ARR14(2)       <---------LBD16  ---------->DOF2               ---------->DOF2           --------->AGP1      >>>>>>>>>GATA-1     --------->YAB1          <---------TOE2(3)              <---------ARR14(2)----------->GT1 <----------DOF2 -->DOF2 <---------DOF5.7(2)  <----------DOF2    ---------->DOF2<-----------GT1<---------TOE2(3)   aattggcccattaacgagaaagacgcttctctcttttctattagatccgttgaaagcgagatagataaaccggatcggtttaatgaaaaggggtaacatc  1261700                                                            ----------->GT1                     <<<<<<<<<TBF1                        <---------ANAC46               --------->ANAC58                <---------GLK1(2)                        <---------ANAC46                --------->ANAC46              --------->ICU4                            <---------LBD16             --------->GLK1(2)              <---------YAB1    <----------DOF2     <---------MYB52(1)         --------->ANAC58            --------->YAB1 <---------MYB52(1)    <-------TEIL                  --------->ANAC58  ----           <-------TEIL   <---------SPL7      --------->MYB46(3)      <-----------RAV1(2)--------->ANAC58   ggaattacaaagtttcatgattcttcttcgttcgctttccaagttccaacgtccgttttggggggaaataaaccaggggacaagaaaatccaagaaaaaa  1261800                                                                                                    -                                                                                                   <-                                                                                               ------                                                                                               ------                                                                                            ------>ZmHOX2a(1)                                                                                            ---------                    --------->GLK1(2)                                                     ------>ZmHOX2a(2)                    <---------ARR11(3)                                                   <------ZmHOX2a(2)                    --------->ARR11(3)                           ----------->GT1        <---------GLK1(2)                    <---------ARR14(2)                           <----------ID1         --------->ARR11(3)              <---------HSFB2a(2)                               ----------->GT1         <---------ARR14(2)              --------->HSFB2a(2)                     <---------AHL20(2)                --------->ARR14(2)    <---------TOE1(3)                          --------->HSFB2a(2)                      <---------ARR11(3)    <---------TOE2(3)                          <---------HSFB2a(2)                      <---------ARR14(3) ----->AHL20(2)     --------->ARR14(2)        <---------LBD16---------->DOF2            --------->ARR14(3)   aaaattcaggtttctgcgagaaaatctggatgaaacagacctatgtgttctgggattttttttcaaagggaaaaaaactcaagggtttaagatcctctgc  1261900  Previous    Next  AGI:  At1g04590.1    Description:  similar to EMB1417 (EMBRYO DEFECTIVE 1417) [Arabidopsis thaliana] (TAIR:AT4G21190.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G18975.3); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G18975.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO45303.1); contains domain TPR-like (SSF48452) Range:  from: 1258576    to: 1261425    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version