Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         <---------HSFC1(2)               <---------LBD16                                       --------->ARR14(2)     ----------->GT1                                                 <---------GLK1(2)  <-----------GT1                                                    <---------ARR14(2) <---------ARR14(2)                                          <---------ARR14(2) --------->ARR14(2)                                          --------->ARR14(2) ----------TaMYB80                                           <---------GLK1(2)          --------->AHL20(2) -------->TaMYB80            <---------AHL20(2)             <------ZmHOX2a(1)           <---------AHL20(2) --------->ARR10 --------->LBD16      --------->MYB52(1)  <---------TOE2(3) --------->HSFB2a(2) -----ANAC46 <-----------GT1 --------->AHL20(2)         ---------->DOF2--------->HSFC1(2) --GT1    --------->YAB1    --------->AHL20(2)       ----------->RAV1(1)    <---------HSFB2a(2)    --   gtatatacggtttaataaccgggttatagatttaattgtctaacagttagagttgccacaaaggattctcagatacttcgagaccaaaaattaaactgag  1215700                                                                    <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                    --------->ANAC58                                                                    --------->ANAC55(1)                                                                    --------->ANAC46                                                                    --------->ANAC58                                                                  <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                 <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                 <---------ZAT14                                                                 --------->ZAT18                                                               --------->At4g35610                                                               --------->ZAT18                                                               <---------At4g35610                                                               <---------ZAT14                                                               <---------ZAT18                                                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                              <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                       <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                                       <---------ANAC58                                                       <---------ANAC46                                                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                          <---------SPL7  <xxxxxxxxxxxxxxxxsmallRNA(si3)                --------->ZAT14           <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                ---------->DOF2          <---------ANAC58<xxxxxxxxxxxxxxxxsmallRNA(fl3)                <---------ZAT14          <---------ANAC58<xxxxxxxxxxxxxxxxxsmallRNA(le3)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)xxxxxxxxxxxxxxxx>smallRNA(s)          ----------->RAV1(1) ----------------->AGL3   <---------ANAC58          <---------ALFIN1--------->HSFC1(2)  <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         --------->MYB46(3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        --------->TCP23   <---------HSFB2a(1)--------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        --------->TCP15(2)--------->HSFB2a(1)--------->ANAC58<xxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->PCF2  <---------PCF2    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       <xxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        --------->DAG2 -       <---------TCP20<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <xxxxx       <---------TCP15(1) <---------HSFC1(2)--------->SPL7--------->REM1(2) <----------DOF2<xxxxxxxxx       <xxxxxxxxxxxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <xxxxxxxxxxxxxxx      <---------PCF2--------->ALFIN1     <---------ANAC46--------->ALFIN1   <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ------->ARR11(3)--------->DAG2  <xxxxxxxxxxxxxxxxsmallRNA(le3)--------->ZAT14     ---------->DOF2  <   agatgttgggacccacagtaaagtgggaaccctccaaaaataggcgtatgccacttagcgtggagagcacacggtattctttagtaaaaggcgaaagaat  1215800                           --------->ALFIN1                         <---------ANAC58                         <---------ANAC46                         <---------ANAC58                  ------->MYC3       --------->GLK1(2)                  <-------MYC3       <---------ARR14(2)                                            <-          <xxxxxxxxxxxxxxxxxsmallRNA(le3)                                                          <-         --------->At4g35610<---------MYB46(3)                                                 ------        <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <---------ZAT14                                <----- -------->ZAT18  --------->O2    --------->HSFC1(1)                                           <------ xxxxxxxxxxxsmallRNA(i) <------NtERF2--------->ARR14(2)                                     <-------- xxxxxxxxsmallRNA(si3)<---------RAP2.3(3)       --------->ZAT14  <---------TOE2(3)          ========= xxsmallRNA(si3) <---------O2    --------->HSFB2a(2)            ===================================== ---------ZAT18<---------ALFIN1  <---------HSFB2a(2)            ---------->DOF2            <---------DAG2   agttcgctatgtgctcaccacatggctgcgtggttcgagaatatggagagtgaagtctatatatactaaagtttcccttggcaaactctctcacctttcc  1215900    <---------PCF2 --------->ALFIN1                                   <---------ANAC58 --------TGA1a                                      <---------ANAC58 --------O2                                        <---------ZAT2 ----------->AGL1                                  --------->ZAT2 ------------AGL1                        <---------AHL20(2) -----------AGL1                         --------->AHL20(2) --DOF2         ----------->GT1      --------->AHL20(2)                                           --- ========bZIP_DOF  --------->YAB1    <---------AHL20(2)              <---------MYB59              --- ========bZIP_DOF <---------ZAT6    --------->AHL20(2)     <----------DOF2<---------AHL20(1)    -----   gatgtgggactctccaaatagtgataagacgcgtctgatttaatttaaaactctgcttgggcttttatgggcctaatatactttgaacttgggctaaaaa  1216000                                                              --------->AHL20(2)                                                              --------->AHL20(1)                                                              <---------AHL20(1)                                                              <---------ARR11(3)                                                      <-----------TGA1                             <-                                                     <---------ANAC58                             <--           <<<<<<<<<TBF1                             <---------ANAC55(2)                      *TSS<-- ------>ANAC58                                       <---------ANAC58                         ------- ------>ANAC58                                       --------->ANAC46                       --------- ---->MYB52(1)          <-----------GT1       --------->YAB1 ----------->TBP        <<<<<<<<<TBF1----   acgaaatcgtttcttcttccattttttaagcctactgaaaccctacaagaagaatgcgtcactatatattaaaccgaaatcgtttcttcttccttcaagc  1216100                                                    ----------->GT1                                                  <------ZmHOX2a(2)                                                 <---------ARR14(2)                                                 --------->AGP1                                                 --------->ARR11(3)                                  <---------CCA1(2)------>ZmHOX2a(2) -----NtERF2                    ==========================HOX2a_HOX2a ---------HVH21                 ------>ZmHOX2a(1)--------->ARR14(2)                              ---- -------RAP2.6(3)         <----------DOF2        <---------ARR11(3)                          -------- -->ANAC46                <---------DAG2         <---------AGP1                           <----------DOF2 ->DOF2                 <---------TOE1(2)  <---------MYB46(3)    <---------At4g35610      <---------DAG2 ----->RAP2.6(2)    <-------TEIL=========================HOX2a_HOX2a                    <---------At4g35610   cgtcaacaatgtcgaagcgaggttcgcacttttcctctatctcagttgttagatctgttacattttcagttcatcaatatgtgtttattcagcttttcga  1216200                                                                                                   <-                                                                                                  ---                                                                                                 <---                                                                                                 ----                                                                                                -----                                                                                                <----                                                                                                -----                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                              ------>NtERF2                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                             --------                                                                                             <-------                                                                                             <-------                                                                                            <--------                                                                                            ---------                                                                                            <------NtERF2                                                                                           <---------MYB46(3)                                                                                           <---------ERF1                                                                                           ------>NtERF2                                                                                          -----------                                                                                          <---------DEAR3(1)                                                                                         <-----------HVH21                                                                                         <---------MYB52(1)                                              <---------------AtSPL3     <-----------HVH21--------->ALFIN1                                           <------NtERF2----------->GT1 <---------bZIP60(1)--------->ABI4(2)                                           --------->ALFIN1             --------->bZIP60(1)<---------ATERF1(1)                                         <---------ANAC46             <------ZmHOX2a(1) --------->LBD16 --->TEIL        --------->ATHB12        <---------ANAC58           <---------TOE2(3) <---------LBD16 ->HSFB2a(2) <---------MYB46(3)          <---------ANAC58          <---------LBD16  <---------SPL7<--   acctcgttttaatcgttgttgatttggatttttttcgattagggcgtggaggtacctctggtaacaaattcaggatgtcactgggtcttccggtggcggc  1216300   --------->ZAT14   <---------ZAT14 --------->At5g28300 --------DEAR3(1) ------>ATERF1(1) ------ATERF1(1) -->NtERF2 ------>HVH21 -----DEAR3(1) ---->DEAR3(1) --->RAP2.3(1) --->ATERF1(1) -NtERF2 ---ATERF1(1) ---ERF1 ---DEAR4(2) ---ORA47(2) ---RAP2.3(1) ---RRTF1(1) --RAP2.3(2) --RRTF1(3)                                         ---------->DOF2 --DREB2C(2)                                      ----------->HVH21                                 x --RAP2.6(2)                                    <---------ANAC46                                  <-- --RRTF1(2)                                     <---------ANAC58                                <---- --RAP2.3(3)                                    --------------->AGL15                           <---- --ATERF1(2)                                    <---------ANAC55(1)                           <------ ->ATERF1(2)                                   <-----------------AGL1                        <------- --DEAR3(1)                               <---------ICU4                                     <------- --ANAC46                              --------->ANAC46----------->GT1                       <------- -ABI4(1)                              --------->REM1(1)     ---------->DOF2             <---------ANAC58 >ATERF1(1)                     --------->GLK1(2)--------->LBD16                         <---------ANAC58 >HVH21                        <---------GLK1(2)<---------ANAC58                        <---------At4g35610 ----NtERF2                  ----------->ARR10 <---------LBD16                         <---------YAB1   gacggtgaactgtgccgataacaccggtgctaagaatctctacatcatttccgtgaaaggtatcaaaggtcgtcttaatcgattaccttctgcttgcgtc  1216400                                                                           <---------WRKY38(1)                                                                         --------->ANAC58                                                                         --------->ANAC58                                                                        --------->MYB59                                                                <------NtERF2                                                               <-----------HVH21             --------                                                               ------>NtERF2                 --------                                                               <---------RAP2.6(3)          ---------                                                              --------->bZIP60(1)           <------NtERF2                                                              <---------bZIP60(1)          ------>NtERF2                        --------->DAG2               <-------TEIL       --------->MYB46(2) <---------RAP2.3(1) xxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <------ZmHOX2a(1) <---------ATERF1(2)         <---------DEAR3(1) ----NtERF2            ---------->DOF2   <---------LBD16      --------->ATERF1(2)         <----------ID1 -----DEAR3(1)    <-----------HVH21      <-----------RAV1(2)  --------->RAP2.6(2) --------->ANAC58 -----ANAC46     --------->DEAR3(1)    ------>ZmHOX2a(2)   ------>ZmHOX2a(1)      --------->ANAC58 -----HVH21      --------->DREB2C(2) <---------ARR11(3)  ----------->RAV1(2)  --------->ANAC58     <- --ANAC58       <------NtERF2  --------->ANAC58     --------->ARR14(2)<---------MYB52(1)  <---------ANAC46 --ANAC46      ------>NtERF2 <--------P===========================HOX2a_HOX2a --------->ANAC58 ------ --ANAC58     <---------ALFIN1 --------->ANAC58  --------->DAG2<-----------TGA1------->GAMYB---------   ggagacatggtgatggccaccgtcaaaaagggtaagcctgatctcaggaaaaaggttcttcctgccgtcatcgttaggcaacgcaaaccatggcgccgaa  1216500                                                                 --------->ANAC55(2)                                      <----------DOF2            <---------ANAC55(2)  <------MYB83                     <-----------GT1               ----------->GT1  <------MYB46(1)                <---------ANAC58                --------->YAB1 <---------AtMYB61               --------->ANAC55(2)            <-------TEIL      --------->ZAT6 ->DEAR3(1)                      <---------ANAC58             <---------ARR14(2) ------>MYB46(1) ->RAP2.3(3)          <---------TOE1(2)                       <---------GLK1(2)  ------>MYB83 >ATERF1(1)           <---------TOE1(3)                       --------->ARR14(2) -------->P -----ZmHOX2a(1)      <---------TOE2(2)                      <------ZmHOX2a(1)  ----------->RAV1(1) ---->DOF2            <---------TOE2(3)              --------->TOE1(3)         --------->AtMYB61 >RAP2.3(1)    ------->TEIL      <---------ANAC55(2) --------->TOE2(3)        --------->MYB46(3) ----   aggatggtgttttcatgtacttcgaaggttagattacttactttctctcttaaaaccctaataggattcgtaatttgttcaccaacactatttagtgtgt  1216600  Previous    Next  AGI:  At1g04480.1    Description:  60S ribosomal protein L23 (RPL23A). Identical to 60S ribosomal protein L23 (RPL23C) [Arabidopsis Thaliana] (GB:P49690;GB:Q8L8P0;GB:Q9SDB5); similar to EMB2171 (EMBRYO DEFECTIVE 2171), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G04400.1); similar to 60S ribosomal protein L23 (RPL23B) [Arabidopsis thaliana] (TAIR:AT2G33370.1); similar to ribosomal protein L17 [Castanea sativa] (GB:AAK25758.1); contains InterPro domain Ribosomal protein L14b/L23e; (InterPro:IPR000218) Range:  from: 1216094    to: 1217466    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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