Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 ---------->DOF2                                             ------>ZmHOX2a(2)                                            <------ZmHOX2a(2)                                            --------->CCA1(2)                                           --------->AGP1                                           <---------ARR14(2)                                           --------->ARR14(2)                    <---------ICU4         <---------ARR11(3)                --------->YAB1             --------->ARR11(3)               <---------ATHB12           <---------GLK1(1)              --------->ANAC58          <------ZmHOX2a(1)              --------->ANAC58    <---------At4g35610          --------->YAB1          --------->ZAT2                                   --------->MYB52(1)       <---------ICU4     <----------DOF2 --------->GLK1(1)                     --------->ANAC46  ------>ZmHOX2a(1) --------->YAB1--------->At4g35610                         <---------AHL20(2) ----   tgtcctgcataatcacaatcaatagttactttcagtagctgaggagatctaaagtcacaacttaaactctatccaactatataaacaacggtttctaaat  1191000                                              ------>MYB46(1)                                              ------>MYB83        <---------------------WRI1                                            --------->AtMYB61     <------NtERF2                                           --------->MYB46(3)   <---------WRKY45                                    <---------GLK1(1)           <---------WRKY12                                    --------->CCA1(2)           <---------WRKY38(1)                                   <---------ARR14(2)        <------MYB46(1)                >>>>>>>>>                                   --------->ARR14(2)        <------MYB83                   >>>>>>>>>                                   --------->ARR11(3)        <---------MYB46(3)            --------->WRKY12                                 ----------->ARR10         <---------MYB52(1)              --------->WRKY38(1)                          --------------->AGL15          --------->ATHB12                  ----------                          <---------------AGL15          <---------MYB46(3)     ------->GAMYB                         ----------------->AGL3         <---------ATHB12       --------->ANAC58                         ----------------->AGL2     <---------ATHB12           --------->ANAC46       <------ZmHOX2a(2) <-----------------AGL3   --------->WOX13(1)           --------->ANAC58 ----->YAB1         <----------DOF2--------->ARR11(1) --------->WOX13(1)     --------->MYB52(1)   cagagttcgatccatgaaataacttttactaaaattagatatgcgaccaactcaatcaatcgttggtcagcgttgaatccaacggaacaagagttgacct  1191100                                        ------>ZmHOX2a(2)                     <---------HSFC1(1)                                       <------ZmHOX2a(2)                      <---------HSFB2a(2)                                       --------->At4g35610                   ------>ZmHOX2a(2)                                       <---------At4g35610                  --------->CCA1(2)                                       --------->CCA1(2)                    <------ZmHOX2a(2)                                      --------->ARR14(2)                   --------->AGP1                                      <---------AGP1                       >>>>>>>>>GATA-2                                      --------->AGP1                       --------->ARR11(3)                                      <---------ARR11(3)                   <---------ARR11(3)                                      --------->ARR11(3)                   >>>>>>>>>GATA-4                                      <---------ARR14(2)            <---------STY1(2)                         --------->ARR14(2)                         --------->STY1(2)     <---------WOX13(1)  <---------ARR11(3)                        --------->ANAC58   --------->ATHB12      <---------GLK1(2)        <-------TEIL <-----------GT1--------->HSFB2a(2)  <---------AHL20(2)     <---------ARR14(2) ----------------->AGL2 --------->ANAC58  <-----------GT1 >WRKY6             -------->P       --------->GLK1(1)  --------->ANAC58   >>>>>>>>>GATA-1 >WRKY11          --------->MYB46(3) <---------GLK1(1)  --------->ANAC58   >>>>>>>>>GATA-3  <------ZmHOX2a(2) ->HVH21  ------>ZmHOX2a(2)         ----------->ARR10<---------At4g35610  --------->GLK1(1)<---------ARR11(3)   atatttcattgatctatggaacaaccagatactatgcagagatctgactagattcagcaagcgattcactagccagagatctagaagttacacgatctaa  1191200                                                                          ------>ZmHOX2a(2)                                                                        --------->ARR14(2)                                                                        <---------AGP1                                                                    ------>ZmHOX2a(2)                                                                   <------ZmHOX2a(2)                                                                  --------->ARR14(2)               --                                                                  <---------ARR14(2)              <--                                                                  --------->ARR11(3)             <---                                           --------->ANAC58       <---------AGP1         <------NtERF2                         --------->At4g35610                      --------->AGP1        --------->LBD16          ---------->DOF2<---------ZAT2    --------->ANAC58      <---------ARR14(1)    --------->LBD16  --------->CCA1(2)      --------->ZAT2    --------->ANAC46      <---------CCA1(2)    <---------LBD16 <---------ARR14(2)      <---------At4g35610          <----------DOF2   <---------ARR14(2)  --------- --------->ARR14(2)----------->RAV1(2)  --------->ZAT18         <xxxxxxxxxxxxxxxxsmallRNA(le3)   ----   tcggatatagatgaaagttatacctgcagctccagtaacgagcacacgaactggttctttcgccatcggatctagatcggagattatcgccggaaaacgg  1191300           --------->KAN4(2)          --------->GLK1(1)          --------->KAN4(1)          <---------KAN4(1)          <---------GLK1(1)          <---------HSFB2a(1)          --------->HSFB2a(1)                                                                       -         <---------ARR14(2)                                                                        --         --------->ARR14(2)                                                                       ---         ---------->TaMYB80                                          <---------ANAC58            <---         <---------KAN4(2)                                           <---------ANAC55(2)         ----         <---------ARR11(3)                                          <---------ANAC46          <-----         --------->ARR11(3)                                          <---------ANAC58        <-------  --------->ARR14(2)                                                 --------->ANAC55(2)     <-------  <---------ARR14(2)                     <----------DOF2    --------->ZAT18         --------->CCA1(2) ---->ZmHOX2a(2)                       <---------At4g35610  <---------ZAT18         --------->GLK1(1) ----ZmHOX2a(2)                        --------->At4g35610--------->At4g35610      <---------ARR11(3) ------ARR14(2)               <---------ZAT14             <---------At4g35610      <---------ARR14(2) >MYB52(1)<----------TaMYB80 <---------ANAC46          ---------->DOF2             --------->ARR11(3) ----->ARR14(2)   <----------DOF2 <---------ZAT6----------->HVH21    <---------ANAC55(1)    <------ZmHOX2a(1)   atcgaatttgggatattcgacttttgagagagcgtagagtcagcttttgtctgaccgtgaagctcactcttgcgtatttatcgaagatatcgaaggatgt  1191400               <---------AHL20(2)      --------->TGA2(2)     <-----------HVH21     <-----------TGA1    --------->bZIP60(1)    --------->O2    --------->ANAC55(2)    --------->ANAC58    --------->ANAC46    --------->ANAC58    <---------ANAC55(2)    <---------TGA1a    <---------bZIP60(1)    --------->bZIP60(2)    --------->TGA1a                                                                              <---    <---------O2                                                                                -----   ------>NtERF2                                                                                <----   <-----------bZIP910(1)                                                                     -------   <-----------STF1                                                                  <---------YAB1<-  <---------ALFIN1        --------->ARR11(3)                                       <---------RVE1(1) ----->NtERF2 --------->YAB1 --------->HSFB2a(2)                                   <---------CCA1(1) ------->DEAR3(1)   --------->YAB1                                       <------ZmHOX2a(1)    <------ ------>DEAR3(2) --------->YAB1                                  --------->YAB1   <---------ARR11(3) ------At5g28300<---------AHL20(2)                              <-----------------AG <---------AHL20(2) --->TEIL  *TSS--------->AHL20(2)             <---------GLK1(1) <-----------------AGL1        <------ ----SPL7<---------At4g35610 <---------HSFB2a(2)                <---------ATHB12  --------->AHL20(1) --------AtSPL3--------->AHL20(1)      <---------AHL20(2)      ------>MYB46(1)    --------->ARR11(3) --------AtSPL8<---------AHL20(1)     --------->AHL20(2)       ------>MYB83       <---------AHL20(1)   accgccacgtcatctaatataatcatattatctcgaagaaataaatcgaaatctgagattagacctatcatattaggaaaacaagatattattcaatata  1191500                                                                    --------->YAB1                                                             <---------ANAC55(1)      --------->ZAT6                                         <---------ANAC55(2) ------AHL20(2)                                              <---------ANAC46 ---->AHL20(1)                                               <---------ANAC58                 ------- -----AHL20(1)                                               --------->ANAC55(2)             -------- -->AHL20(1)                                                 <---------ANAC58           <------NtERF2 --------AHL20(2)                                           <-------TEIL              <---------DEAR3(1) ---ARR11(3)                                              <---------ARR14(2)       <-----------RAV1(1) ---AHL20(1)                                              --------->ARR14(2)   --------->ARR11(3)   tatttttgactctaatgggcctcttacattaggcccaaatcgtttagcccagagtattcaaatacgtgaatcaaaacagtagataatggtggcgataagg  1191600                                            <-----------HVH21                                            <-----------TGA1                                           <---------ANAC58                                           --------->ANAC58                                           --------->ANAC55(2)                                           --------->ANAC46                                           <---------ANAC55(2)                                           --------->TGA1a                                           --------->bZIP60(1)                                           --------->TGA2(1)                                           <---------TGA1a                                           <---------O2                                           --------->O2                                           <---------TGA2(1)                                      --------->At4g35610                                      <---------At4g35610                                   <------NtERF2                                  <-----------TGA1                                 --------->bZIP60(1)                             --------->At5g28300                                 <---------ANAC58                             <---------At4g35610                                 <---------ANAC58<---------MYB111(1)       --------->At4g35610                                 <---------bZIP60(1)   --------->MYB52(1)  --------->ZAT2                              ----------------------->TaNAC69(2)           <---------At4g35610                     --------->MYB46(3)    =======================MYC_MYB  <---------ZAT2               --------->ANAC58  <---------TGA2(1) ------>MYB83          <---------WRKY38(1)               --------->ANAC58  <---------ANAC46<---------MYB46(2)   <---------MYB46(3)          <-------PIF5       --------->SPL7--------->ANAC58--------->At5g28300--------->At4g35610          ------->PIF5------->GAMYB--------->TGA2(2)--------->ANAC46 --------->ALFIN1       <---------ALFIN1 <---------LBD16    <---------ANAC58<-----------HVH21 ----------->RAV1(1)       *TSS    --------->ANAC46  --------->TGA2(1) ------>MYB46(1)   <---------AtMYB61       <------ZmHOX2a(1)    <---------ARR14(2)--------->AtMYB61    <---------bZIP60(1)      <---------MYB52(1)    <---------HSFB2a(2)    --------->ARR14(2)===============================MYC_MYB       --------->LBD16    --------->TOE1(2) -->DAG2 --------->ANAC58  <---------MYB52(1)--------->TGA2(2)   <---------LBD16----------->GT1   <-- -->DOF2 --------->ANAC58 --------->LBD16 <-----------STF1------->GAMYB<-----------HVH21  --------->HSFB2a(2)   cgagaagaaccacgtccacgacaacctccggtatggcgtcatcttacgtcacctactcaacggtcactccggtggtcagcagcagtaacattcgaggagt  1191700                           <-----------GT1                      <---------ANAC46                     <------NtERF2                    --------->ABI4(1)                    ------>NtERF2                   --------->RRTF1(3)                   --------->RRTF1(2)                   --------->DEAR3(1)                   --------->RAP2.3(2)                   <---------DEAR3(1)                   --------->RAP2.3(3)                  --------->DEAR4(2)                  --------->RRTF1(1)                  <------NtERF2                  --------->ATERF1(1)                  --------->RAP2.6(1)                  --------->ERF1                  --------->DEAR3(2)                  --------->ORA47(2)                  --------->RAP2.3(1)                --------->ANAC46              xxxxxxxxxxxxxxxx>smallRNA(s)              --------->ANAC46              --------->ANAC58                                                    <------------------   <---------MYB52(1)--------->ATERF1(1)               <---------ARR14(2)       <---------DEAR3(1) <---------ANAC58<---------ATERF1(1)                   --------->GLK1(2)        --------->DEAR3(1) <---------ANAC58------>NtERF2                     <------ZmHOX2a(1)     ---------->DOF2 --------DOF2 --------->ANAC58               <---------LBD16        <---------ANAC46              <--   ctttcgtttggcattcacgcgccgccgtgttactctatcgccgaatgctcggaggagaatattgagagtttcggcgaaagcgtcgacgaagaatgctatg  1191800                 --------->GLK1(2)                 <---------ARR14(2)                <---------ARR14(2)               --------->HSFB2a(1)             ==================HOX2a_HOX2a             <------ZmHOX2a(1)             =================HOX2a_HOX2a     ==========================HOX2a_HOX2a     =========================HOX2a_HOX2a     <------ZmHOX2a(1)                ----------->GT1   ----------->GT1      ------>ZmHOX2a(2)        --------->ZAT18               ------>ZmHOX2a(1) ---WRI1 --------->ICU4<------ZmHOX2a(2)   <---------YAB1                    ----------->RAV1(2) -------ANAC46 <---------HSFB2a(1)--------->At4g35610                 <----------DOF2--------->YAB1   gagtataggaaattaggagattccgatctcaacatcagcgaagttactatgggcactgtaagaacaatctctctttatctcctgcaattgtagtccattg  1191900  Previous    Next  AGI:  At1g04410.1    Description:  malate dehydrogenase, cytosolic, putative. Identical to Malate dehydrogenase, cytoplasmic 1 [Arabidopsis Thaliana] (GB:P93819); similar to malate dehydrogenase, cytosolic, putative [Arabidopsis thaliana] (TAIR:AT5G43330.1); similar to malate dehydrogenase-like protein [Solanum tuberosum] (GB:ABC01890.1); contains InterPro domain Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal; (InterPro:IPR015955); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain Malate dehydrogenase; (InterPro:IPR008267); contains InterPro domain Malate dehydrogenase, NAD or NADP; (InterPro:IPR010945); con Range:  from: 1189077    to: 1191411    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g04420.1    Description:  aldo/keto reductase family protein. similar to KAB1 (POTASSIUM CHANNEL BETA SUBUNIT), potassium channel [Arabidopsis thaliana] (TAIR:AT1G04690.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71416.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395) Range:  from: 1191607    to: 1193883    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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