Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          <---------ARR11(3)                                                                        --------->AHL20(1)                                                                        <---------AHL20(1)                                                                  --------->ANAC58                                                              <------NtERF2                                                             <---------RAP2.3(1)                                                             <---------ATERF1(1)                                                             <---------DEAR4(2)                                                             <---------ERF1                                                             <---------ORA47(2)                                                             ------>NtERF2                                                            <---------RAP2.3(2)                                                            <---------DEAR3(1)                                                            <---------RAP2.6(2)                    --                                                            <---------RAP2.3(3)                ------                                                           <---------ABI4(1)                  -------                    ------------------------>ANAC81        --------->ATERF1(1)                -------            <------MYB83                     --------->RAP2.6(2)  --------->ANAC58     <---------At4g35610            ----------->GT1                --------->At4g35610--------->ATERF1(1)      --------->At4g35610            <------MYB46(1)                <---------At4g35610--------->RAP2.3(1)   <---------ATHB12          <---------WOX13(1)        --------->AHL20(2)    <---------ATERF1(1)     --------->WOX13(1)   tttcaaaattagattggtaaaattacaaacaaacaaaaaaaaatcagccgaaaaattagagggcggcgaagcaatatatcatttcaatcagctaaaatat  1154300                                                                   --------->LBD16                                                                  <---------LBD16            <---------ICU4                                       ------>ZmHOX2a(2)            --------->ATHB51                                    <------ZmHOX2a(2)       --------->TOE2(3)                                       <---------ARR14(2)    <---------ARR14(2)                                        ------->GAMYB    --------->ARR14(2)                                       --------->MYB46(3)        ----------->GT1 ------->LBD16                                    <---------At4g35610                 <---------AtMYB61 --->ARR11(3)        ---------->DOF2              --------->At4g35610      --------->YAB1   --------- -->RVE1(1)--------->ICU4                       <-----------RAV1(2)----------->GT1  --------->ALFIN1 -->CCA1(1)<---------YAB1                 ---------->DOF2  --------->MYB52(1)  --------->GLK1(2)   --   ccagagaaacctcataatttcatcaaagacatcggaaaacaaaacaaagcccagatgaaatcaacgatcggggaaaatcaaaatcggtgtggtatcaaaa  1154400                                                                                                 <---                                --------->ARR14(2)                                               ----                                --------->GLK1(2)     --------->CCA1(2)   <---------REM1(1)--------->TOE2(2)                                <---------ARR14(2)   <---------ARR11(3) <---------ANAC58   --------->TOE1(2)                          --------->ANAC58        <------ZmHOX2a(1)     <---------ANAC46  ----------- >YAB1     --------->YAB1 --------->ANAC58 ---------->DOF2              <---------ANAC58 --------->GLK1(2) -------->DOF2     ---------->DOF2  --------->LBD16  --------->ARR11(3)<---------MYB46(3)------->TEIL   tgaaagactgtaatcggaacataaagcctcgcaaaatccgaagaacaaaggaggagatatagaagaagcttattggttgtagatcgaagcgaacctgaga  1154500                                                            --------->GLK1(2)                                                     ------>ZmHOX2a(1)                                                <---------At4g35610                                                --------->ZAT2                                                <---------ZAT2                                                <------NtERF2                                                --------->At4g35610      ---------->DOF2                          <<<<<<<<<AtERF-4                            --------->MYB52(1) ------AtMYB61                                 <---------ATERF1(1)                     -------------- ----->ALFIN1       --------->GLK1(2)          <<<<<<<<<AtERF-3                      ---------->DOF2- >RAV1(2)    ---------->DOF2             --------->MYB52(1)<---------GLK1(2)--------->MYB46(3)    <--   tggtggaagaaagagcaaagagaagctaattcgttgaatgggctaatggcagctcctatgagattctacagagagagaacaaaccaaaaaagacgacgga  1154600                                                    --------->YAB1                                              --------->TOE2(3)                                      --------->ANAC46                                      --------->ANAC58                                              -           ----------->GT1            --------->ANAC58                                             <-          ----------->GT1            <---------TOE1(2)                                            <--    ---------->DOF2                <---------SPL7   --------->TOE2(3)                             --- ---------->ANAC81               --------->PCF2    *TSS        --------->AHL20(2)             <------ --------->DOF2                 <-----------HVH21  ----------->GT1                         ---------- ----ZmHOX2a(1)         ---------->DOF2      --------->At4g35610      <---------ANAC55(2)---------->DOF2   ggaaaagaaagagagataaatagagagaaagagaggtcgcacgaatcacctcaatgttaaaaaaaaaaaatcacataaaccttttaaaaacaaaagttaa  1154700                                                                                --------->AHL20(2)                                                                            <---------AHL20(1)                                                                            --------->AHL20(1)                                                                            <---------AHL20(2)                                       --------->ARR14(2)                   --------->AHL20(2)      <  --------->DAG2                    <---------ANAC46                       --------->AHL20(2)       < --------->DOF2              <---------ANAC55(2)                <------ZmHOX2a(2)                  -- --------AHL20(2)            --------->ANAC55(2)            --------->HSFB2a(2) <---------AHL20(2) -- -------AHL20(2)            <-------TEIL--------->CCA1(2)   <---------HSFB2a(2)--------->AHL20(2)  -- ------>AHL20(2)          --------->ARR14(2)      <---------ARR14(2)   <---------ATHB12   --------->REM1(1) ---AHL20(2)          <---------LBD16  <---------ARR14(2)  <---------LBD16 <---------ATHB12        -- ->GT1              ------->TEIL<------------CBF  --------->ARR14(2) --------->GLK1(1)   <-------TEIL   ttaaaaggtcgaagttaatatgtacctggatacatattgtggatacaagttgtatacggtttctggatcagaaatcaataaatttataagcttcatctaa  1154800                                                        --------->HSFB2a(1)                                                        <---------HSFB2a(1)                                                       <---------KAN4(2)                                                     <------ZmHOX2a(1)                              <---------ANAC46     --------->ANAC58                              <---------ANAC58     --------->ANAC58         <-----------GT1                            <------MYB46(1)       --------->SPL7------>NtERF2                            <------MYB83         <---------MYB52(1)     <---------AHL20(2)                          <--------P            --------->LBD16 ----------->RAV1(1) -----------TGA1        <------MYB46(1)     --------->ARR14(2) <---------ETT(1) -----------HVH21       <------MYB83        <---------ARR14(2) --------->ANAC46 ------->bZIP60(2)     <---------AtMYB61   <---------GLK1(1)   ----------->HVH21                  --- ------->ANAC46        --------->MYB111(1) --------->GLK1(1) ------>ZmHOX2a(1) <----------DOF2    --- ------->ANAC58       <--------P----------->GT1<---------ANAC55(2)      --------->AHL20(2)        --- ------->ANAC58---------->DOF2<---------ANAC58 --------->ANAC55(2)<---------ALFIN1  <---------GLK1(1)   aacgtcacaatatttgacaaaggagttggtaggcttgtaaatcacaaatccgtaaggaacatcctccgacacatttttttactttgaattctgttatcac  1154900                                           <------MYB83                                      --------->ANAC58                                      --------->ANAC46                           --------->SPL7       --------->REM1(1)              --------->ANAC58                          ------>MYB46(1)  <---  --------->ANAC58                 <---------REM1(2)                            ------>MYB83     ----  --------->ANAC58                 -------->P                                   --------->MYB52(1)  ----------->GT1               <---------ANAC58                        <-----------GT1      -------- ------>ANAC58                  <---------ANAC58                 <---------TOE2(3)--------->ANAC58 ------>ANAC58             <----------DOF2 <------MYB46(1)       <---------TOE1(3)--------->ANAC58 ------>ANAC46            <---------DAG2   ----------->GT1   <----------DOF2  ------->GAMYB  --------   cagcaagttacaacaagtctgcatcataccttttgcctacacgataggttaaaacctagttaactttcaggtttttacaaccgaacgacaacgttttagt  1155000                                                                                                    <                                                                                                   --                                                                                                   --                                                                                                   --                                                              --------->ARR11(3)       XXXXXXXXXXXXXX                                                              <---------ARR11(3) xxxxxxxxxxxxxxxx>smallRNA(s)                                                      --------->ANAC46    --------->ZAT6    <--------       <---------MYB52(1)                       <---------GLK1(2)        <---------ZAT18   <---------ALFIN1 ------ZAT18                                   --------->At4g35610       --------->ZAT18 <---------ALFIN1 ----->ZAT14                                   <---------At4g35610   <----------DOF2  <---------ALFIN1 ------->AtSPL3                         <---------GLK1(2)    <---------CCA1(2)--------->ZAT14    ---- ------->AtSPL8   ---------->DOF2  <-----------GT1  <---------ALFIN1 ================================   actctctctgttaatctcattaaagcccctactgtttttacaaattctcagattccaccccttaaatctttcttttgcactacattcccctccccccctt  1155100                                                                    ------>NtERF2                                                                   --------->DREB2C(2)                                                                   --------->DEAR3(1)            --------->ATHB12                                       ------->GAMYB           <---------YAB1                                          <---------ALFIN1         --------->YAB1                                           --------->MYB46(3)        <---------ATHB12                                          --------->ORA47(2)  <---------TGA2(1)                                              <---------At5g28300  --------->TGA1a                                               <---------ALFIN1  <---------TGA1a                                               --------->ANAC46  --------->TGA2(1)                                            --------->MYB46(3)  <---------O2                                               <---------ARR11(3)  --------->O2                                               --------->ARR11(3)  <---------ANAC46                                           <---------ARR14(2)  <---------bZIP60(1)                                        --------->ARR14(2)  --------->bZIP60(1)                                       --------->GLK1(1) ---------TGA2(2)                                          ---------->TaMYB80 ---->ZmHOX2a(1)                                           <---------KAN4(2) --------->TGA1   <---------ANAC46                        <---------GLK1(2) --------->HVH21  <---------ANAC58                      --------->LBD16                     <------NtERF2 XXXXXX>MIR847    <---------ANAC58   <---------TOE2(3) <---------HSFB2a(2)               <---------LBD16 -ALFIN1--------->ICU4               <---------TOE1(3) --------->HSFB2a(2)--------->ETT(2) --------->LBD16 ------->RAV1(2)<---------MYB46(3)----------------------->TaNAC69(2)--------->ABI4(1)  ------>ZmHOX2a(2) ===========bZIP_DOF           <------ZmHOX2a(1)      <---------LBD16     <---------ETT(2)--------->DEAR3(1)   cctgacgtcaatgatcagtggctagtagacggaggagttgaggttctaaacgtttctccagaatatccaccgcctctcgacatcatcgatcgccggagtt  1155200  Previous    Next  AGI:  At1g04300.1    Description:  similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G43560.1); similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G43560.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO71320.1); contains InterPro domain MATH (InterPro:IPR002083); contains InterPro domain TRAF-like (InterPro:IPR008974); contains InterPro domain TRAF-type (InterPro:IPR013322) Range:  from: 1148658    to: 1154651    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g04310.1    Description:  ERS2 (ETHYLENE RESPONSE SENSOR 2); receptor. similar to ETR2 (ETHYLENE RESPONSE 2), receptor [Arabidopsis thaliana] (TAIR:AT3G23150.1); similar to At1g04310-like protein [Arabidopsis lyrata] (GB:ABY67638.1); contains InterPro domain Histidine kinase A, N-terminal; (InterPro:IPR003661); contains InterPro domain GAF (InterPro:IPR003018) Range:  from: 1154763    to: 1157710    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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