Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      ====================HOX2a_HOX2a                    <---------ZAT14                   --------->ARR11(3)               --------->REM1(2)              --------->ALFIN1                          <---------MYB52(1)           <---------DEAR3(1)                          <-------GAMYB         ------>NtERF2                               <------NtERF2     <---------ARR14(2)                             ------>NtERF2<---------ANAC46     --------->ARR14(2)          ------>ZmHOX2a(1) <---------DEAR3(1)    <---------ZAT2 <---------ARR11(3)  --------->ARR14(2)      ------>ZmHOX2a(1)             ------>ZmHOX2a(1)    <---------At4g35610      --------->ARR14(2)    --------->DEAR3(1)              <---------ANAC58    --------->At4g35610      <---------ARR14(2)   --------->ATERF1(1)          <---------ANAC58   ----------->ARR10<------ZmHOX2a(2)  <---------ARR14(2)     <---------ALFIN1 <---------ANAC58 ----MYB52(1) <---------ANAC46 ------>ZmHOX2a(2) <---------ATERF1(1)     <---------ICU4 <----------DOF2 -->LBD16--------->LBD16 --------->At4g35610     <-----------HVH21       <---------GLK1(2)  --------- -LBD16<---------LBD16   <---------At4g35610    --------->DEAR3(1)--------->LBD16  <---------ANAC58   atgtgaagctccggctgtgtagatcactgctgatcctatcaaatccaccagcgtcgccgttgctcctccgtgtaagaatttccctgcgttctttcctcaa  1148100                                <---------HSFC1(1)                  <---------LBD16                                --------->HSFC1(1)                  <-----------RAV1(2)                                <---------HSFB2a(2)            <-------GAMYB                   <-----                     --------->GLK1(2)                        <---------MYB46(3)     --------->GLK1(1)                    <---------GLK1(2)                        <--------P<------ZmHOX2a(1) <---------AtLEC2                 <---------TOE2(3)                          <-------GAMYB--------->At4g35610   ------       ---------->DOF2  <----------DOF2  <---------TOE2(3) <---------MYB46(3)       --------->ARR14(2) >TOE2(3)     --------->ICU4    --------->HSFB2a(2)       --------->ALFIN1     <------ZmHOX2a(1)   caaattcacaaaagtcattagggattctttttttctcgaaattagggatttgttgttcatgtggttgttaccaggagatgaggagggattttcatggagc  1148200                       --------->CCA1(2)                                                   ----------                       <------ZmHOX2a(2)                                                   <---------ANAC58                      --------->ARR14(2)                                                   <---------ANAC46           <---------ZAT2<---------ALFIN1                                                  <---------ANAC58         <-----------RAV1(2)<---------DAG2             <---------HSFB2a(2)                --------->MYB52(2)    --------->SPL7    --------->ARR11(3)           --------->TOE1(2)                  <---------MYB46(3)   --------->CCA1(2)  <---------ARR14(2)        ------->TEIL   ----------------------->TaNAC69(2)<---  --------->ARR14(2)  <---------ARR11(3)     <---------ANAC55(2)                  --------->ATHB12<--  --------->ARR11(1)  --------->AGP1--------->ATHB12   --------->HSFB2a(2)      ----------->RAV1(1)  <---------ARR14(2) --------->GLK1(1)  <---------MYB46(3)  --------->GLK1(2)   ------>NtERF2  ------ ----At4g35610      ----------->ARR10 <---------MYB52(1)  <------ZmHOX2a(1)    --------->DEAR3(1)<--- --->At4g35610<-------TEIL  <----------DOF2  --------->ANAC55(2)    ----------->GT1 <---------MYB52(1)   agacgatacggccaggttcgatgagatccactttaagaccattggttacgaatcgttcgaggaatctgtgtggtaatttcgccaccattggttccttggc  1148300                         <---------DAG2                         <----------DOF2    <-------TEIL                      <---------RVE1(1)    <------ZmHOX2a(2)                     <---------GLK1(2)    <---------ARR11(3)                --------->LBD16                     <---------ARR11(3)   --------->ARR14(2)               <---------ANAC58                     --------->ARR14(2)   <---------ARR14(2)               <---------ANAC58                     <---------ARR14(2)   --------->AGP1                   --------->ANAC55(2) ---------->ID1    --------->LBD16  --------->GLK1(2)                      <---------ANAC55(2) ----------->WRI1 <---------HSFB2a(2)  --------->HSFB2a(2)           <----------DOF2   <----------DOF2 ------DAG2       --------->HSFB2a(2)  <---------HSFB2a(2)      <---------DAG2        <---------DAG2 --------DOF2  ===================================HOX2a_HOX2a   <----------DOF2    <---------ALFIN1 ---->ID1 <---------At4g35610 <-----------GT1                  <---------DAG2 <---------ARR11(1) -------DOF2   ------>ZmHOX2a(1)   <---------GLK1(2)      <----------DOF2 <---------LBD16   cttttcgtcttcatctccttccagatactttttcaccgattctagatccattctcttcttctttcccttttctttttccgtatcaacaccttttgagggt  1148400                 --------->AHL20(1)                 --------->AHL20(2)  --------->AHL20(2)                                       -------                 <---------AHL20(2)  <---------AHL20(2)                                  ------>ZmHOX2a(2)          ----------->GT1      --------->YAB1                    <-----------GT1       <---------ARR11(3)     --------->AHL20(2)      ------->TEIL              <-----------GT1        ---------->DOF2<-------     <---------AHL20(2)   <---------YAB1            <---------AHL20(2)       --------->AHL20(2)   tttttttttaaatcgaaaattttttgatatgaatcagatttaaatggctcacatttttttctagtttttactcattcaaataaagaagtgatctaatcaa  1148500                    --------->AHL20(2)                    --------->AHL20(1)                    <---------AHL20(1)                    <---------AHL20(2)                                                      ---------                   --------->AHL20(2)                                                     --------->ARR11(3)               --------->AHL20(2)                                                <---------YAB1    --    ---------->DOF2<---------AHL20(2)                               --------->GLK1(1)  <---------TOE2(3) -->YAB1---------->DOF2                               <---------AHL20(2)      <----------DOF2     <-- --ATHB12 ----------->GT1       *TSS            <---------ALFIN1    <---------GLK1(1) ---------->DOF2   attagacaaagaaagaaaaaaataaattagacaaaaaaacacacacacacacacattttatattagacagatttcagtttcttttgattaaagataaaga  1148600            --------->YAB1          <-----------TBP        --------->AHL20(2)        <---------AHL20(2)       --------->AHL20(2)       --------->AHL20(1)       <---------AHL20(1)   <---------YAB1 ->DOF2<---------AHL20(2)<---------LBD16                                      <---------AHL20(2) --------->GT1----------->TBP       <---------LBD16                           --------->AHL20(2) ----ZmHOX2a(1)--------->YAB1   <----------DOF2 <-----------GT1<---------ARR11(3)         <----------   ggagtataatttatttataaaaactattcagggactttcagggaagagtttttctatgcgaaaactatcttatactatatttaaaaaaaaaaaaaccatt  1148700                                                             <-----------GT1                                                             ---------->ID1                                                     <---------ARR11(3)                                                   --------->ICU4                                                   <---------YAB1        --------->AHL20(2)<---------ARR14(2)                                                 --------->YAB1 <----------DOF2            --------->ARR14(2)                                         ----------->GT1<---------AHL20(2)         <---------ICU4 -GT1    <------ZmHOX2a(1)    <----------DOF2   <-------TEIL<-----------GT1  --------->AHL20(2) <----   tgaaacgtagaggatgacaagaagacaactctctttacacaaattgtatattcatgattttttttcctttttaaaaaaaataaaaacattacaaatcccc  1148800                                                      <-----------GT1           --------->HSFC1(2)                                           --------->ZAT14   --------->ANAC58   <---------HSFB2a(1)                               <---------ANAC46     --------->YAB1         <---------------------WRI1                               <---------ANAC58    <---------ICU4        <---------ARR14(2)     -----                  --------->YAB1          --------->ALFIN1   --------->ANAC58   <---------HSFC1(2)<--                 <---------ATHB12         <---------REM1(1)  ----------->GT1    --------->HSFB2a(1) -----ALFIN1 <---------YAB1    <---------ANAC58   --------->ICU4         --------->ARR14(2)----------   tctctccatttgctgatcaatgaccattcgatggcctgaactcggtgtagccattaataccagacgtaaaacttggattcgaagcgtccaaaccaaagta  1148900                                                               --------->MYB46(3)                                                           <------NtERF2                                                          ------>NtERF2                                                         --------->ATERF1(2)                                                         <---------ATERF1(2)                                                        <---------ANAC58                --------->At4g35610                     <---------ANAC46             --------->At4g35610                        <---------ANAC58     ----------->GT1                               <---------ICU4 ---->MYB52(1)  <---------At4g35610                --------->ATHB12 ----------AtMYB77 <---------At4g35610            ------>ZmHOX2a(1)    <-------TEIL               <-- >DOF2       <---------At4g35610                  <---------YAB1------->GAMYB<-------TEIL   <--------   actgtgatggtaattagctgctgatgatgttccatcttccattccattgctcctcattgctggcaacgacaagtccatgttcgtcatttgccactgtctc  1149000  Previous    Next  AGI:  At1g04290.1    Description:  thioesterase family protein. similar to thioesterase family protein [Arabidopsis thaliana] (TAIR:AT2G29590.1); similar to At1g04290-like protein [Arabidopsis lyrata] (GB:ABY67535.1); contains InterPro domain Phenylacetic acid degradation-related protein (InterPro:IPR003736); contains InterPro domain Thioesterase superfamily (InterPro:IPR006683) Range:  from: 1147522    to: 1148532    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g04295.1    Description:  other RNA Range:  from: 1147780    to: 1148434    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g04300.1    Description:  similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G43560.1); similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G43560.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO71320.1); contains InterPro domain MATH (InterPro:IPR002083); contains InterPro domain TRAF-like (InterPro:IPR008974); contains InterPro domain TRAF-type (InterPro:IPR013322) Range:  from: 1148658    to: 1154651    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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