Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 <---------AHL20(2)                <---                                                               --------->AHL20(2)                <---                                                   --------->ANAC58                              <---                                                   --------->ANAC58                          <-------GAMYB                                                 <---------GLK1(1)                           <-------                                                 <-----------GT1       <-------TEIL          <-------                                     <---------AHL20(2) <---------CCA1(2)                   <--------                                <-------TEIL  --------->MYB59 <---------ATHB12           ------------ ---GT1                  ----------->GT1 <---------AHL20(2) --------->WOX13(1)<---------ALFIN1<------   tacgttgatatagtttttaagaccatatggtatatacatatatttagttagataccccatatcaattaatcggttcatcaccacttaattcacttggttg  1135900 ------ANAC58 ------ANAC46                                                     --------->TOE2(3) ------ANAC58                                             <---------ANAC46                    ------- --ANAC58     <---------ICU4                              <---------ANAC58            <----------DOF2 --ANAC58    <---------YAB1                               <---------ANAC58       --------->ARR11(3) -MYB46(3)   --------->ICU4       <---------ARR11(3) <----------DOF2             <---------ARR11(3) --------->WRI1                   <-----------ARR10 <---------ANAC58            <---------CCA1(2) --P       --------->YAB1         --------->ARR11(3)<---------ANAC58     ----------->GT1  <----------   cttcgaatgtgtttcataattcacttgtaattttaaaatctttccttcacttgtgctttcgcttgtaatctcaaaatgttatatatctcttttaacggga  1136000                                                              --------->ANAC55(2)                                                              --------->YAB1                                                              --------->ANAC46                                                         <---------AHL20(1)                        <---------AHL20(1)            --------->AHL20(2)                        --------->AHL20(1)           <---------ATHB12                   --------->AHL20(2)                <---------ATHB51                               -        ---------->DOF2--------->AHL20(2)----------->GT1 --------->ARR11(3)      --------->YAB1   --- ---->GT1          <---------AHL20(2)  --------->ZAT14--------->YAB1            <---------ATHB12  --- -GT1  --------->AHL20(2)   <-----------GT1<<<<<<<<<<WRKY63  <-------TEIL  <---------ARR11(3)<-------TEIL   gaaaaacgattaaagacggattaaaatatatatccattttgtatagtcaaatgcaataatatatacataatctacaagataaatcataagaaagattcaa  1136100                                                                                            <XXXXXXXX                                                                                           ------->MYC3                                                                                           <-------MYC3                                                                                           <-------MYC2                                                                                           <-------MYC4                                                                                           ------->PIF5                                                                                           ------->MYC4                                                                                           ------->MYC2                                                                                           <-------PIF5                                                                                          --------->O2                                                                                          <---------O2                                                                                          --------->TGA1a                                                                                          ===========                                                                                          --------->ANAC46                                                                                          <---------TGA1a         ----------->GT1    --------->ATHB12                                              --------->ANAC55(2) -------->ZAT6 --------->YAB1                                         ==============================bZIP_DOF ------>MYB52(1)       <---------YAB1 ---------->DOF2                 ---------->DOF2   <---------ALFIN1 ------>YAB1--------->YAB1 --------->ICU4              <------ZmHOX2a(1)           <-------TEIL   taacagtaatagagtaataacagtgattactgattagtctaaaagactaaaactcgaggatgatgacttaatcaaagggcttagattcatccacgtgtct  1136200                                           <---------ZAT2                            <----------ID1 --------->ZAT2                            --------->ANAC58                  ------>ZmHOX2a(2)        <---------At4g35610                 --------->GLK1(1)         --------->At4g35610                 <---------GLK1(1)        ------->TEIL                 <------ZmHOX2a(2)    ------->MYC2            --------->CCA1(2)                <---------AGP1        ------->MYC3           --------->ARR11(3)                <---------ARR11(3)    <-------MYC2  ------>ZmHOX2a(1)                --------->ARR11(3)    <-------MYC3  <---------HSFB2a(2)      <---------At4g35610<----            ---------->DOF2 --------->ANAC46        --------->HSFB2a(2)      --------->At4g35610<---- XXXXXXXXXXXXMIR826         --------->ANAC58<---------MYB111(2)--------->AHL20(2)               <---- ======================bZIP_DOF   <-------TEIL-------->P *TSS<---------ARR11(3)    <----------DOF2   aaaacccgtttaatcaaagatctcttaaatacgacatacacatgcagctacctcctagacagagatataatacagactcatctcactttgtattatttga  1136300                                                                               <---------ICU4      --                                                                               --------->YAB1      <-                                                                               --------->ATHB12    --                                                                               -------->HAHB4      --                                                                              <---------YAB1  -------                                                                              --------->ICU4  -------                                                                            --------->YAB1    <------         <-----------GT1                                                    <---------ICU4    <------   <---------YAB1                    ------>MYB83                          --------->ICU4--------->REM1(2) -----ANAC46                 <---------ICU4                          ----------->GT1    --------->ALFIN1 -----ANAC58                ------>ZmHOX2a(1)  >>>>>>>>>TBF1   >>>>>>>>>TBF1-------->HAHB4 <---------ANAC58 -----ANAC58     <-----------GT1     ------>MYB46(1)    ---------->DOF2    <---------ATHB51<---------ANAC58   gtgtttttataaaaccatttttccatcttcctcatcaccttcccaagaagaagaacaccaaagaagaagaaaggttaataatgatgggcagtgtcgagct  1136400                                                         --------->ARR14(2)                                                         <---------ARR14(2)                                                        ----------->HVH21                                                      --------->LBD16                                                    <---------LBD16 ----->TEIL    --------->At4g35610         <-------TEIL<---------MYB52(1) --------ARR14(2)     <---------ANAC46    --------->CCA1(2)  ----------->GT1 ------->GLK1(2)      <---------ANAC58   --------->ARR14(2)  --------->LBD16                  ------>ZmHOX2a(2) ------->ARR14(2)     <---------ANAC58   <---------ARR14(2)<---------LBD16                   -------- -->At4g35610  <---------ZAT2       --------->ALFIN1<------NtERF2                            <------- -->ZAT2       --------->ZAT2    --------->LBD16  --------->ARR14(2)                        <-------- ---At4g35610  <---------At4g35610--------->LBD16 <---------ARR14(2)                    <-------GAMYB ---ZAT2     <---------ZAT14    <---------LBD16   <---------PCF2                       <---------MYB46(3)   gaatctgagggagactgagctgtgtcttggtcttcccggtggagatacagtggctccggtaaccggaaacaagagagggttctcagagacggttgatctg  1136500                                                  <---------bZIP60(2)                                                  <---------ANAC46                                                  <---------O2                                                  --------->TGA2(1)                                                  --------->bZIP60(1)                                                  <---------bZIP60(1)                                                  >>>>>>>>>>HY5                                                  <---------TGA2(1)                                                  --------->O2                                                 ----------->STF1                                                <---------TGA2(2)                                               ----------->HVH21                                        --------->ANAC46                                     ------>ZmHOX2a(2)                                    <------ZmHOX2a(2)                                    <---------GLK1(1)                                   <-----------ARR10                                           ------                                   <---------ARR14(2)                                          <-----                                   --------->ARR14(2)                                         <------                                   --------->ARR11(3)                                         <------                                   <---------ARR11(3)                                         -------                                  <------ZmHOX2a(1)                                           -------                                 <---------HSFC1(2)                                           -------                                 <---------HSFB2a(1)                                      ---------->DOF2                                 --------->HSFB2a(1)                                     ------>ZmHOX2a(1)                 ------->TEIL    --------->HSFC1(2)   xxxxxxxxxxxxxxxx>smallRNA(s)       ============ ->At4g35610<---------ICU4  --------->ANAC58   ----------->TGA1                       ---------->ID1 --At4g35610--------->YAB1  --------->ANAC46 --------->YAB1   <---------YAB1      <---------ANAC58 -AGP1     --------->ICU4   --------->ANAC58 <---------ICU4<----------DOF2        <---------ANAC58   aagctaaatctgaataatgagcctgcaaacaaggaaggatctacgactcatgacgtcgtgacttttgattccaaggagaagagtgcttgtcctaaagatc  1136600           ------>NtERF2          --------->LBD16          ------>NtERF2   <---------ALFIN1                          <---------AHL20(2) --->CCA1(2)                                --------->AHL20(2) -ZmHOX2a(2)                                <---------AHL20(2) ---ARR14(2)                             --------->ATHB12                      <---------TOE2(3) ---ARR11(3)     --------->AHL20(2) <----------DOF2                           <-----------GT1 -->ARR14(2)   ----------->GT1      ------>ZmHOX2a(1)                      --------->YAB1 -->ARR11(3)   --------->ANAC58     <---------DAG2                       <---------YAB1 -->AGP1<---------LBD16<-----------GT1  <---------YAB1              --------------->AGL15  --------->DAG2 =HOX2a_HOX2a  --------->ANAC58  ---------->ID1  <-----------GT1  <---------ZAT18        ---------->DOF2   cagccaaacctccggccaagtaattttactattttgtcctttatgatttattttccactcttctctactgctcttaatattaacatttttgtaaaggtga  1136700                                    <<<<<<<<<<GT-3b                                <---------AHL20(2)                               --------->AHL20(1)                               <---------AHL20(1)                            --------->CCA1(2)                           --------->ARR11(3)                     --------->ETT(2)                        <---------TOE2(3)                  --------->YAB1                       ---------->DOF2    --------->ANAC46<---------YAB1                    --------->TOE2(3)<-----------GT1    <-----------GT1                            <-        --------->MYB52(1) <---------ARR11(3)          <---------AHL20(2)    <-----------GT1 >>>>>>>>   ctgcaaaaaaaaacagaaatttcattaaagatatatatttttcttcgccaaaaccattttatcatatgtctacggtttttttctcttcttaaatcgtcca  1136800  Previous    Next  AGI:  At1g04250.1    Description:  AXR3 (AUXIN RESISTANT 3); transcription factor. Identical to Auxin-responsive protein IAA17 (IAA17) [Arabidopsis Thaliana] (GB:P93830;GB:O49162); similar to IAA14 (SOLITARY ROOT), transcription factor [Arabidopsis thaliana] (TAIR:AT4G14550.1); similar to auxin/indole-3-acetic acid [Solanum tuberosum] (GB:ABK41009.1); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311); contains InterPro domain Aux/IAA-ARF-dimerisation; (InterPro:IPR011525) Range:  from: 1136257    to: 1138612    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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