Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                <---------ANAC46                                   --------->ICU4         <----------DOF2                                         <---------YAB1 <-------TEIL <---------ANAC58       <------ZmHOX2a(1)         --------->YAB1                      <- ------->ARR14(2)                 --------->HSFB2a(2)         <---------YAB1                       -- --------ARR14(2)                 <---------LBD16             --------->ICU4                   <----- --------GLK1(2)       <-----------GT1--------->ALFIN1   --------->TOE2(3)                --------->At4g35610 --->ZAT14    <---------ANAC58    <---------HSFB2a(2)    <---------ANAC58                 <---------At4g35610 ----ZAT14  <---------ANAC46  <----------DOF2            <---------ANAC58     ------>ZmHOX2a(1)------   agattcagagacttttgtgtgagtttaacttactttcgaggaggggatgtttcagttttccttgatgatgattcaatctccttctcagtatcagttgata  1129200                           <---------GLK1(2)                              --------->ANAC46 <---------ANAC58        <---------YAB1   --------->ANAC58                         <---------MYB52(1)       <---------ANAC58 --------ZAT18           --------->ANAC58         <-------TEIL   --------->LBD16 --------->ZAT2<----- ------->ZAT14<---------YAB1              <---------ANAC58      --------->LBD16  <---------ZAT2<----- ----------AtSPL8 <-----------GT1         <---------ANAC58     <---------ANAC46  --------->At4g35610 --------->AtSPL8<---------YAB1      <----------DOF2           <---------LBD16   <---------At4g35610   gtactctcttattgttgttattacagcaagaaactctctcttttgcttcacatacattatctgttcccggtaatcccagcctcagctctgtttccttgag  1129300                                                                                                   <-                                                                                                -----                                                                                             <-------                                                                                             --------                                                                                             --------                                               ---------->DOF2                               <-------                                     ----------->GT1                                --------->CCA1(2)                                    ----------->GT1               --------->TOE2(3)<---------ARR11(3)  <------------MYB.PH3(2)       <------ZmHOX2a(1)               <---------YAB1     --------->ARR11(3) ----TOE2(3)                 <-----------RAV1(2)    <----------DOF2   ---------->DOF2       --------- ----TOE1(3)            <---------ICU4    ---------->DOF2    <---------YAB1   <------ZmHOX2a(1) <----   gttaacaaactcatccatttcttcaagaattgcaggagaagataaaaagaaaagcttttggttattatccttgaaagagaggagagatatagagaagctg  1129400                               <---------ANAC46 <---------YAB1            <---------At4g35610 --------->ICU4            --------->ZAT2 --------At4g35610         --------->At4g35610 ---->At4g35610            <---------ZAT2 --At4g35610            <------ZmHOX2a(1) ->At4g35610         <---------HSFB2a(2)                          <---------GLK1(2) ->HSFC1(2)          --------->HSFB2a(2)                          --------->ARR11(3) --HSFC1(2)     <---------HSFB2a(1)                         <---------YAB1 >GLK1(2)       --------->HSFC1(2)              ---------->DOF2 ----------->ARR10               ----- -----At4g35610 <---------HSFC1(2)      <-----------GT1   ---------->DOF2<--------P   --------->GLK1(2)   ctgatgatgaagatgagaggcttcgaggaagctgagtgttttatacaagttaaaggagaataaagatagatactggtagagagagaagaaactgttttct  1129500                                         --------->MYB52(1)                                       --------->At5g28300                                    --------->At4g35610                               <---------At1g77200                               --------->ETT(1)           ----------->GT1    <<<<<<<<<<DREB2A        ---------->DOF2       <<<<<<<<<<DREB1A                 --------->ALFIN1     <------ZmHOX2a(1)    <---------ANAC58  --------->ANAC46--------->DAG2    <----------ID1--------->DAG2 <-------GAMYB    *TSS<---------TOE2(3)   <---------TOE2(3)      <---------ANAC58  ------->GAMYB  ---------->DOF2                         <- ---------->AGL15---------->DOF2<---------DEAR3(2)<----------DOF2 <-----------HVH21       <---------ANAC46   gaattaaggacaaaggaaaaaaagctaagcttgtcggtagcagtaacagcaactttgaggcaaaagtgtgtcccatcttcttggggacatttgtggggac  1129600                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                              -------                                                                                              -------                                                                                              <------                                                                                             ------>NtERF2                                                                                             --------                                                                                            <--------                                                   <----------DOF2                    <---------ARR14(2)                                               <----------DOF2                <---------ARR14(2)    <                                         <-----------GT1                      --------->ARR14(2)    -                                      --------->ARR11(3)                      <---------ARR11(3)  ---                                      --------->AHL20(1)                      --------->ARR11(3)  <--                                      <---------ARR11(3)     <---------WOX13(1)       --------->ARR14(2)                                      <---------AHL20(1)  <---------YAB1     <---------CCA1(2)<------        <-----------GT1             <---------ARR11(3)<---------ANAC46    <------ZmHOX2a(2) ---------   <----------DOF2                  --------->AHL20(1)<---------ANAC58   <---------ARR11(3)--------->MYB46(3) ---------DOF2                      <---------AHL20(1)<---------ANAC58   --------->AGP1  --------->ANAC46   actttctttttctcccatctgtccaaacccaaaaacaaaatattttcatctttctttcttgtgatagacggtccagatcaaatcttcgaatcccccacca  1129700      --------->ANAC58      --------->ANAC58 ----ALFIN1 --->AtMYB61 ----------AGL15                                                        --------->ARR14(2) --------->AGL15                                                 <---------HSFC1(2) -->ANAC46                                                       --------->HSFC1(2) ---------->AGL2                                                 <---------HSFB2a(1) -----------AGL1                                                 --------->HSFB2a(1)     <----------DOF2 --->RAV1(1)                                                   <---------ARR11(3)       <---------ICU4 -ALFIN1                                                   ------->GAMYB<---------ARR14(2) -------MYC3                                              --------->MYB46(3)          --------->GLK1(2) ------>MYC3                                             --------->ANAC58 ------>ZmHOX2a(2)  <------- ---->MYC3                                           --------->YAB1 <---------LBD16   <---------ARR11(3) -----MYC3            <-----------GT1         <-----------GT1--------->ANAC58  <---------At4g35610 -----------AG     <---------CCA1(2)       --------->YAB1--------->ANAC58<------ZmHOX2a(2)   <------- >ANAC46          ---------->TaMYB80      --------->AHL20(2) --------->ANAC58  --------->At4g35610   catgtggtatgccatatgggcatatcacctctctctatctcccattaataacttatcacaaccaagaaatttcggatcgtaagctcataatcttttctta  1129800                 --------->ANAC55(2)                 <---------ANAC55(2)                       --------------->AGL15              --------->ARR14(2)                          --------->ZAT6        ------->GAMYB                                   <-----------GT1         <---------ZAT6       --------->MYB46(3)                              --------->AHL20(2)  --------->STY1(2)       <---------MYB55(2)                        <-------GAMYB             <---------STY1(2)       <---------MYB111(2)                      ----------->GT1           --------->MYB111(2)      <-       <---------MYB52(2)                       <---------MYB46(3)       <--------P               <-- --ANAC58  ------->GAMYB<-----------GT1         <------MYB83          <---------TOE2(3)         ----- --ANAC58--------->MYB52(1)                     <------MYB46(1)     ---------->DOF2     --------->ATHB12   ccaagaacaacaaccgaatacatattttactcgttttctcaatagatggatggttaattaactctatatgtaaaggtagctagtgttcaatgtttggatt  1129900                                                 <---------AHL20(2)                                              --------->AHL20(2)                                              --------->ATHB51                                              <---------ICU4                                              <---------AHL20(2)                                              <--------ATHB1                                           --------->YAB1                                        --------->ANAC55(2)                           ===============                                        --------->ANAC58                              <-------GAMYB          --------->ARR14(2)            --------->ANAC58                             --------->ALFIN1          <---------ARR14(2)        --------->YAB1                                 <---------ANAC46   <---------MYB46(3)              <------ZmHOX2a(2)                               <---------ANAC58  <--------P                      <---------ARR11(3)                               <---------ANAC58 --------MYB46(3)                 --------->ARR11(3)                           <----------DOF2 -------ANAC46              <---------ANAC58 --------->ICU4<---------CCA1(2)   ====================== ---->ALFIN1                <---------ANAC58 <---------ATHB51                <-------TEIL      ------   gtgggtagttcagatttgatgagtttattgacttgagatcataagtaataatttatgtctcacatcttcaaaaaacaggtactttgggtgttgaagagcc  1130000                      --------->AHL20(2)             ----------->HVH21           ==================================bZIP_DOF                                               <           --------->O2 <---------ANAC55(2)                                                        --           <---------TGA1a                                                                     <-----           <---------O2 --------->ANAC55(2)                                                   <------           --------->ANAC46                                                                  --------           ==================================bZIP_DOF         <----------DOF2                <-------           <---------ANAC55(2)                            <---------ALFIN1                 <---------ICU4           --------->TGA1a                              --------->ANAC46                   --------->YAB1           --------->ANAC55(2)                         --------->ZAT18                    --------->ICU4 ====================MYC_MYB                  <---------MYB46(3)                          <---------ATHB12 ====================bZIP_DOF     <----------DOF2 ---------->DOF2                       --------->WOX13(1) ----------->AGL3     <-----------GT1         --------->MYB52(2)   ---------->ID1       --------->YAB1   aaaaacagagcctacgtgacaaaattacttattgttctttactggggtttgttaaagcccacaacttttgtctctctgtctctaacctattaatcatgat  1130100  Previous    Next  AGI:  At1g04240.1    Description:  SHY2 (SHORT HYPOCOTYL 2); transcription factor. Identical to Auxin-responsive protein IAA3 (IAA3) [Arabidopsis Thaliana] (GB:Q38822;GB:O04741); similar to ATAUX2-11 (indoleacetic acid-induced protein 4), transcription factor [Arabidopsis thaliana] (TAIR:AT5G43700.1); similar to At1g04240-like protein [Arabidopsis lyrata] (GB:ABY61939.1); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311); contains InterPro domain Aux/IAA-ARF-dimerisation; (InterPro:IPR011525) Range:  from: 1128187    to: 1129550    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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