Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               <---------MYB46(3)                                             <-----------RAV1(1)                                          <----------DOF2                                         ------>ZmHOX2a(2)                                        <------ZmHOX2a(2)                                       --------->ARR14(2)                                       --------->GLK1(2)                                       --------->ARR11(3)                                       <---------ARR11(3)                                       <---------ARR14(2)                                       <---------ARR14(3)                                ----------->HVH21                                       <-----------ARR10                              <----------CDC5                                      <------ZmHOX2a(1)                             --------->ANAC58                                   --------->HSFB2a(2)                            <---------ALFIN1                                   <---------HSFB2a(2)                          >>>>>>>>>>DREB2A                               --------->TOE1(2)                                >>>>>>>>>>DREB1A                              --------->KAN4(1)                                <---------ETT(1)                              <---------KAN4(1)                               --------->DEAR3(2)            <----------DOF2   --------->HSFC1(2)                             --------->MYB52(1) ---------HSFB2a(2)           <---------HSFC1(2)                            --------->CCA1(2) -------->LBD16               --------->HSFB2a(1)                          --------->ARR11(3) -------->HSFB2a(2)           <---------HSFB2a(1)                          <---------ARR14(2) ------->HSFB2a(2)           <---------KAN4(2)     ---------->DOF2         --------->ARR14(2) --------LBD16          <---------LBD16--------->ARR14(3)                  <---------ARR11(3)    <--- -------LBD16     ----------------->AGL1<---------RVE1(1)           <---------ANAC46--------->ANAC58   tccgggaagtaagtcttttgtccaagaccggaacgttcgaggatcttttgttggaaagcgaggttgtcttctgtgaagataccgacacgctgagaccggt  1122100                                                                                                  <--                                                                                                 <---                                                                    --------->TOE1(2)            ----                                              --------->ANAC58    --------->GLK1(2)              <---           <---------ANAC46                 --------->MYB46(3)   --------->ARR11(3)              ----           <---------ANAC58            ----------->GT1           <---------GLK1(2)               <---   ------->TEIL                  <---------ANAC46         <------ZmHOX2a(1)<------ZmHOX2a(1)    ----- ----TEIL  <---------ANAC58 ----------->ARR10 --------->ANAC58 ----------->ARR10       <---------ANAC46   ccatgaacgtttctcgtgtgcatattagagaagagtcgggtttgtaacaagcgaaatcgaggagaaagattctgcgaggacgagttgtgaagtagagggt  1122200                                                                                                    <                                                                                               ------                                                                                          --------->MYB52(1)        --------->CCA1(2)                                                       ===================== -----GAMYB                                                                     ===================== ------MYB46(3)                                                                 ------>ZmHOX2a(2) --- ------->GT1                                                <-------GAMYB      ====================== ---MYB46(1)        <---------ANAC46                       --------->MYB55(2)  ====================== ----->MYB55(2)    <------NtERF2                           <---------MYB46(3)  <------ZmHOX2a(2) <--- ---MYB83        <---------DEAR3(1)    <------ZmHOX2a(1)  --------->ALFIN1     <---------------------WRI1 ---->ALFIN1 ---------->DOF2 --------->ALFIN1          --------->DAG2   --------->ALFIN1  ---------->DOF2   ggttagaaagataagaagagcggcgaagagagtggaagagaggaagtggaatttgagaaggtggttgtataagagtgtgagatcggtgagactaaaggag  1122300          <---------ANAC46          --------->DEAR3(1)         <------NtERF2         ------>NtERF2        <---------RAP2.3(1)       <---------DEAR3(1)       <---------RRTF1(2)       <---------RAP2.3(2)       <---------RAP2.6(2)       <---------ANAC46      <---------LBD16     --------->ALFIN1    --------->ALFIN1  <---------ANAC46                                                       --------   <-------GAMYB     --------->ATERF1(1)                                                     <-------TEIL  <---------MYB46(3) <------NtERF2                        --------->ANAC55(2)              <---------SPL7 <---------AtMYB61  <---------ATERF1(1)                   <------MYB83                    <---------ANAC58 ------ZmHOX2a(1)   ------>NtERF2                         <------MYB46(1)                 <---------ANAC58 --->ALFIN1 --------->ALFIN1                 <------NtERF2<---------ANAC55(2)            ------------ ======HOX2a_HOX2a --------->DEAR3(1)      --------->ANAC46                              <----------- ===HOX2a_HOX2a    ----------->HVH21       --------->ANAC58                              <----------- ------>ALFIN1    --------->DEAR3(2)       --------->ANAC58                             <------------ ===HOX2a_HOX2a  --------->ATERF1(1)      --------->RAP2.6(3)   --------->YAB1  <---------AHL20(1) ======HOX2a_HOX2a--------->ATERF1(1)   --------->ETT(2) --------->MYB46(2)   >>>>>>>>>MYB98 ------->TEIL ---ZmHOX2a(1)<------ZmHOX2a(1) --------->YAB1           --------->MYB59     <-----------GT1---------   gaggaggttgcggcgaggaggccgacggggagtatgagaatgtagacggcattcgagattaggtaatggtaaccaagtttaacatatttgagacgtacgg  1122400                                                                                   <------MYB83                                                                                   <------MYB46(1)                                                                                  --------->MYB111(1)    <------ZmHOX2a(1)                                                             <---------TOE1(2) ->SPL7                                                                           --------->MYB59 --->AtSPL3                                                                       <---------TOE2(2) ----AtSPL8                      --------->ATHB12                      <---------YAB1 ----AtSPL3                   <---------ANAC55(2)                <---------YAB1  <--------P ------SPL14             <---------MYB46(3)              <----------DOF2    --------->YAB1      <---- >SPL1(1)                --------->MYB52(2)     --------->ANAC55(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   ataagaggaagtttgggagttttttgtttgttacatgaatggtgttgttcatgtgatcactttgaatgtgattctcattcatggtaggttttttggtttt  1122500                                                          <---------YAB1                                                       <---------------AGL15                                                      <---------ANAC46                                                      <---------ANAC58                                        <------MYB83  <---------ANAC58                                        <------MYB46(1)--------------->AGL15         ---------->DOF2                --------->At4g35610       --------->YAB1                   <---------At4g35610                                       <--   <---------YAB1        *TSS          <---------DEAR3(1)<------------CBF                --------->DAG2 --------->YAB1 <---------ANAC58  --------->DAG2  <------------CBF                      ---------->DOF2 -----AHL20(2)  <---------ANAC58 ---------->DOF2 --------->ATHB12 ---------->DOF2  <---------ANAC46 <   aaatgataatcaaaagtagcgagacaaaaaaaaaaaaaagggaggtgagatttattgcttattgtagagaaagagataacttatggcctaaaaagttgaa  1122600                                                                     <---------ANAC55(2)                                                                     --------->ANAC55(2)                                                                    <-------TEIL                                                                  <---------SPL7                                                                 <------MYB46(1)           <---------AHL20(2)                               <---------YAB1                     <-----          <-----------TBP                                   <---------TOE2(3)             <---------REM1(1)  <------------CBF                         --------->AHL20(2)    <------MYB83          <-----------RAV1(1) -------ZAT6                 ---------->DOF2  <---------TOE2(3) <---------------AtSPL8<---------YAB1 ---------YAB1  --------->ANAC46   <------ZmHOX2a(1)     --------->ICU4            <---------YAB1<---   gtgttattgtgaatttataggcaaaattttagaaagaggatgcaatttaagaaaatgtagttatggatggtacgtagtccctatggttattgttgtagcg  1122700                                                                                               <-----                                                                                               ------  <---------MYB59                                                                          <---------YAB1 <---------At4g35610                                                                       <---------AHL20(2) --------->At4g35610                                                           <---------At4g35610<-- ----ANAC46                                   --------->AHL20(2)               --------->At4g35610<-- --------HVH21  <---------GLK1(2)             <---------AHL20(2)      --------->AHL20(2) --------->YAB1   gtgagctaactatgcattgattctgttttgaccaaaaacatatgtttttttaatatgctatacttcatccatttttatatcagatgtctatttataattt  1122800                                        <---------AHL20(2)      <----------DOF2         <---------YAB1                                                        <   <---------ARR11(3)        <-----------GT1                                                        -   --------->ARR11(3)        <---------ARR11(3)                                                    <-   <-----------GT1           --------->ARR11(3)                                       --------->AHL20(2) ----AHL20(2)          <---------AHL20(2)                                          --------->YAB1<--- --->AHL20(2)          --------->AHL20(2)   --------->ZAT6                        <---------YAB1 <--- -------AHL20(2)      --------->AHL20(2)--------->AHL20(1)       --------->YAB1--------->ICU4   ----- -------YAB1    <-----------GT1         <---------AHL20(1)       ----------->GT1--------->YAB1-------   tttattatcttttcaatgtaacaatttaaattatctttctaatatatcactacaatttttgtgtttatagtaatttaagcattgattataaaatatgcat  1122900      <---------ARR11(3)      --------->ARR14(2)      --------->ARR11(3)      <---------GLK1(2)      <---------ARR14(2)     <------ZmHOX2a(1)   <---------TOE2(3) ---------->DOF2 ---------AHL20(2) -------->AHL20(2)                                       <---------ANAC58                   --------- --------YAB1                                            <---------ANAC46             --------->LBD16 -----HAHB4                   ---------->DOF2          --------->ARR11(3)             <------NtERF2 ------ICU4                 --------->YAB1 --------->ANAC58             <------MYB83<---------LBD16 ---->ICU4             ------->TEIL        --------->ANAC58             <------MYB46(1) <-----------HVH21 -->YAB1       ----------->RAV1(2)       ---------->DOF2 <---------ANAC58     ---------->DOF2   aattaaaggattttcatgcctgatgcacattcaaaagtcgatggaaagtaacccaaatgtcttgtagtagggataggttttaaagggccgggtcatgtat  1123000  Previous    Next  AGI:  At1g04220.1    Description:  beta-ketoacyl-CoA synthase, putative. Identical to 3-ketoacyl-CoA synthase 17 (KCS17) [Arabidopsis Thaliana] (GB:Q5XEP9;GB:O64485;GB:Q56WE1;GB:Q8VXW2); similar to beta-ketoacyl-CoA synthase, putative [Arabidopsis thaliana] (TAIR:AT5G43760.1); similar to beta-ketoacyl-CoA synthase, putative [Arabidopsis thaliana] (TAIR:AT2G26640.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96299.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71273.1); similar to beta-ketoacyl-CoA synthase [Gossypium hirsutum] (GB:ABV60087.1); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392); conta Range:  from: 1119698    to: 1122525    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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