Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       <---------ZAT2                                                                                     --------->At4g35610          --------->ATHB12                                                           <---------At4g35610         <---------YAB1                                                          --------->ALFIN1         =================HOX2a_HOX2a                                          <---------ANAC46         <------ZmHOX2a(2)                      ---------->DOF2            <---------ANAC46        --------->ARR11(3)             ----------->GT1                     <---------ANAC58        <- ---------YAB1     ------>ZmHOX2a(1) <---------------------WRI1            <---------ANAC55(1)     -- ----MYB46(3)    ------>ZmHOX2a(2)  --------->GLK1(2)     --------->LBD16  <---------ANAC58    <----- -->GT1 <---------ARR11(3)  ------->TEIL     --------->YAB1             --------->GLK1(1)     <------   ttaccagtgagatcattgatcctatatatgaatttgataatcggtaagaataaagacacccgagagtagttcagatttcgtgtgtgtagctgctatttac  995700                                                                                         <---------AHL20(2)                                                                                        --------->AHL20(2)                                                                      --------------->AGL15                                                                      <---------------AGL15    <-----      --------->ATHB12                                       --------->At5g28300        <---------AHL20(1)   ---------->ID1                                         <---------ZAT14               --------->AHL20(1) --------O2                                <---------At4g35610       <-----------GT1    <---------AHL20(2) ------->O2                                --------->At4g35610       <-----------------AGL1   <------ ----At5g28300             --------------->AtSPL8        ----------->RAV1(1)     ----------->GT1 -----GT1           <----------ID1  <---------YAB1    <-----------GT1<-----------------AG--------->AHL20(2)   cacttggctcattgaagaatagacaacaaattgtacttacaattgtgctgatatatataccacagtgattttcacaaaatgggaagtgaatttattttac  995800                                                                       --------->RVE1(1)                                                                      <---------ARR11(3)                                                                      --------->ARR11(3)             <---------MYB52(1)                                   ------->GAMYB            --------->TOE2(3)               ----------->GT1       --------->TOE2(3)   <---------ANAC58             ------>ZmHOX2a(2)    ----------->GT1  --------->GLK1(2)   <---------TOE2(3)   <---------ANAC58     <---------AHL20(2)  <---------ANAC46     --------->MYB46(3)       <---------TOE1(3) ----At5g28300          <-----------GT1<---------ICU4<---------ANAC46<---------GLK1(2)   <-----------GT1 -----GT1   --------->TOE1(3) <---------ARR11(3)   ----------->GT1--------->YAB1        <-----------GT1   cgattgcttcaaacccttaattctatatacttgatctctaaacattgtgtaaattgtgtaaatttcaaccaaaatctctgaaatgtgtttttaacgtttt  995900                                                                                         <-----------GT1                                                                    <------MYB83  <---------LBD16                       --------->DEAR3(1)                           <---------DEAR3(2)  --------->GLK1(1)                      --------->DEAR3(2)              <-----------GT1      <-----------------AGL1                     ------->TEIL       <-----------GT1 ----------------->AGL1   <---------LBD16          <---------ZAT18    --------->ARR14(2)  <---------MYB52(1) <------MYB46(1)--------->LBD16<--          --------->ZAT18    <---------ARR14(2)<---------MYB46(3)  <---------DEAR3(1)  <---------KAN4(2)   tgatcatataagtggacaatatgaaccggccgattttgctcttaaccagtcgttattttccatagacggtcggtttttcttgaaccgggaatttccacat  996000                                                  <---------SPL7                                                 <---------TGA1a                                                 --------->TGA1a        --------->LBD16                                                 <---------O2          --------->LBD16       ------->GAMYB                          <---------YAB1         --------->O2    <---------ARR11(3)    --------->TOE2(3)                         <---------AHL20(2)   --------->DEAR3(1) --------->ARR11(3)    --------->TOE1(3)                --------->bZIP60(1)          --------->DEAR3(2)  --------->GLK1(2)     --------->YAB1                --------->O2                 --------->MYB46(3)  <-----------ARR10   <---------ARR11(3)                <---------O2               --------->ARR14(2)    <---------ARR14(2)  --------->ARR11(3) <---------AHL20(2)      --------->AHL20(2)<---------ARR14(2)    --------->ARR14(2)<---------AHL20(2) --------->AHL20(2)<---------ANAC46 ---------->DOF2      ----------->TGA1    --------->TOE2(3)    <-- -------ARR11(3)<---------bZIP60(1) =======================bZIP_DOF   ----------->RAV1(2) <----------   gattttattgacagaacgacgtcgtattaaaatagaaggaaagaagaaccgacgtccgaatgacgaaaatctccctgaaacttaataaatcttaaccctc  996100                                                                        ------>MYB46(1)                                                                   --------->YAB1                                                                --------->WOX13(1)                                                              --------->LBD16                                                              ------>NtERF2                                                             --------->RRTF1(2)                                                             --------->RRTF1(3)                                                             --------->RAP2.3(3)                                                             --------->ANAC46                                                             --------->DEAR3(1)                                                            --------->RRTF1(1)                                                            --------->RAP2.3(1)                                                           <---------RAP2.3(1)                                   ------->GAMYB           ------>NtERF2-------->P                                  --------->MYB46(3)       <---------ATERF1(1)                                  --------->DEAR3(2)      --------->DEAR3(1)                                 ------>MYB46(1)          --------->ANAC58                      =====                            --------->ARR14(2)            --------->ANAC58                      <----                            --------->GLK1(2)            --------->SPL7 ------>MYB83           <-----                       ----------->GT1      <---------ALFIN1<------NtERF2<---------ALFIN1      <-----                      <------ZmHOX2a(1)     --------->DEAR3(1)<------NtERF2                    <-----                     ----------->GT1        --------->AtMYB61--------->RAP2.6(2)               ------                <---------LBD16  --------->SPL7          --------->ATERF1(1)                   <-----               <---------LBD16   ------>MYB83           <---------ATERF1(1)      <-----------HVH21            --------->ATHB51<---------ARR14(2)  <-----------HVH21 --------->MYB46(3)           ------        <-----------------AGL3   -------->P--------->MYB46(3)--------->RAP2.3(2) <-----------TGA1----        ----------------->AGL3  ------>ZmHOX2a(1)      --------->DEAR3(1)--------->ZAT6        <-----       <------ZmHOX2a(2)    <---------ARR11(3) --------->DEAR3(1) <---------ATHB12             ------       ======================HOX2a_HOX2a --------->REM1(1)--------->ANAC46   --------->YAB1    <----- --------DOF2 *TSS  --------->ALFIN1------>NtERF2    --------->LBD16   ----------->RAV1(1)     ------ -GT1  ================================HOX2a_HOX2a  <---------ANAC46  --------->AtMYB61       <------   ctttgctcgatccattatcggggaggagaaaatcctaccgccttcaccaccgtcgcgcagacgccgcaatcaccaacactcatcgtcactgactccagat  996200  ------>ZmHOX2a(1) ========HOX2a_HOX2a --ZmHOX2a(2) ----AGP1 ----ARR14(3) ------ARR10 --->AGP1 ----ARR14(2) --->ARR14(3) -->ZmHOX2a(2)                            --------->ATHB12                  <---------At4g35610 ----GLK1(2)                         <---------MYB52(1)                    <-----------RAV1(1) --->ARR14(2)                       --------->At4g35610           --------->GLK1(2) ----ARR11(3)                       <---------At4g35610          <---------GLK1(2) --->ARR11(3)                       --------->LBD16            ----------->ARR10 ---CCA1(2)                     ------>ZmHOX2a(1)          <---------At4g35610 ----------->GT1    <--   cttcctctccaactaggtttgcaattctcttctccttccgctgtttattggtttcaatttctgcttagattctcttactgctggtgaaacttgaatttgg  996300                                                                                                    -                                                                                                   --                             <---------TOE1(2)                                                     <-                          <---------ANAC46             <----------DOF2                           ----                          <---------ANAC58         <------MYB83                                <-----                          <---------ANAC58         <------MYB46(1)                         <---------DAG2                     <---------ALFIN1             <---------AtMYB61                        <---------     <----------DOF2--------->MYB46(3)         <-----------RAV1(1)                     <---------ZAT18 -------At4g35610 <-----------GT1             --------->ARR11(3)     <----------DOF2   --------->ZAT18   agcttctcttttcgctcatttaaccacttcgtgtgttcttagggtttagatgttggtcttttagggactctctttgaatacttgtttattgcactttaag  996400                                                                                         ------->TEIL                         --------->ARR11(1)                                              --------->ARR14(2) -------->ATHB12         <---------ARR14(2)                                         --------->CCA1(2) ------->ICU4            --------->ARR14(2)                                  --------->At4g35610 --------YAB1            --------->ARR11(3)                            --------->At4g35610 ----->YAB1              <---------ARR11(3)                            <---------At4g35610   -------- ----TOE2(3)   ----------->HVH21                              --------->ALFIN1      --------->At4g35610 -DOF2  <---------AHL20(2)--------->CCA1(2)             --------->CCA1(2) ---------->DOF2<---------ARR14(2)   aatgattcaatttatcttcgacagagagatatgggttctcatggtaagggtaagagagatagaagtggaaggcagaagaagcggagagatgaatccgagt  996500                                                        <------NtERF2                                                       --------->ABI4(1)                                                       ------>NtERF2                                                      --------->RAP2.3(2)                                                      --------->RAP2.3(3)                                                      --------->RAP2.6(2)                                                      --------->ATERF1(2)                                                      --------->DEAR3(1)                                                      <---------ATERF1(2)                                                     --------->DEAR4(2)                                                     --------->ERF1                                                     --------->ORA47(2)                                                     <------NtERF2                                                     --------->ATERF1(1)                                                     --------->RAP2.3(1)                                                    ------>NtERF2  <-----------RAV1(2)                                                    <---------RRTF1(1)                                                    <---------ATERF1(1)                                                    <---------RAP2.3(1)                                                   <---------DEAR3(1) <------ZmHOX2a(1)                                                 <-----------HVH21 <---------LBD16                                                ===============================RAV     <---------At4g35610                                                ======================RAV<------ZmHOX2a(1)                                                <-----------RAV1(1)--------->HSFB2a(2) --------->At4g35610                                            --------->ATHB12       <---------HSFB2a(2) --------->ZAT2                                         --------->At4g35610   --------->GLK1(1)    <---------At4g35610                                         <---------At4g35610 <------ZmHOX2a(1) --------->DAG2                                       =====================RAV<---------GLK1(1)    --------->At4g35610 ->LBD16           --------->ZAT6      <-----------RAV1(2)<-----------RAV1(2)---------->DOF2  <------NtERF2   ctgggtctgagtccgagtcttacacttctgactctgatggctcagatgatttgtcgccgcccaggagttccaggaggaagaaaggtagcagcagtcgtcg  996600  Previous    Next  AGI:  At1g03905.1    Description:  ABC transporter family protein. Identical to Non-intrinsic ABC protein 4 (NAP4) [Arabidopsis Thaliana] (GB:Q3EDJ0;GB:Q9ZWB0); similar to POP1 [Arabidopsis thaliana] (TAIR:AT5G44110.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40609.1); contains InterPro domain ABC transporter related; (InterPro:IPR003439); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593) Range:  from: 993399    to: 995783    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g03910.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO62957.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAO37540.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74141.1); contains domain PTHR21737 (PTHR21737); contains domain PTHR21737:SF4 (PTHR21737:SF4) Range:  from: 996114    to: 1000230    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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