Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    <----------DOF2             --------->ANAC58                 ------->GAMYB             --------->ANAC46              ----------->RAV1(1)             --------->ANAC58              --------->MYB52(1)          --------->ZAT18                --------->MYB46(3)                                 XXXXXXXXX   <---------ANAC58                     --------->At4g35610           <--------P        <----------DOF2   <---------TGA1a                      <---------At4g35610         --------->YAB1      -------------   <---------ANAC58                 <-----------HVH21       ------->TEIL        <---------ANAC46   <---------ANAC46                <---------MYB46(3)   <---------TOE2(3)     <---------ANAC46    ---   ttgtgacttgagagcacgagacaatagacaacaatggtggtcagccaacagtctttttgatgtatgttaatggtaagttgatgtgtgtttctttgtaatc  993000                               ------>ZmHOX2a(1)                              --------->TOE2(3)                        <-----------GT1                       <<<<<<<<<<GT-3b                   <---------ICU4                   --------->AHL20(2)          <-----------GT1                                -------                   --------->ATHB51     <---------YAB1                                <---------AHL20(1)               --------->AHL20(2)     <---------ICU4                                  --------->ARR11(3)   <---------ALFIN1<---------AHL20(2) --------->YAB1                               --------->AHL20(2) <---------ALFIN1 --------->ICU4     <---------YAB1                                <---------AHL20(2) XXXXXXXXXXX>MIR4239 <---------YAB1--------->YAB1             --------->ATHB12 <---------RVE1(1) -------->WRI1 <---------YAB1 --------------------->WRI1     <---------YAB1   --------->ARR11(3) --->ZmHOX2a(1)<---------AHL20(2) <---------YAB1           --------->YAB1     <---------ARR11(3)    <   ctcccacactccctgttttaattatttttcttccttataatcatcgttgttacattatcgattatcatttgtatcactgagatattaatatatacaaaaa  993100                                                                                            <--------                                                                                           --------->ARR11(3)                                                                                           --------->AHL20(1)                                                                                           <---------ARR11(3)                                                                                           --------->ICU4                                                                                           <---------AHL20(1)                                                                                        --------->AHL20(2)                             --------->TOE2(3)                              --------->AHL20(2)                       <----------DOF2                                      <---------AHL20(2)        --------->ATHB51    --------->ANAC46                          --------->ANAC58--------->ANAC58        <---------ICU4<---------ANAC58                        <---------ANAC58        --------->ANAC46     --------->YAB1   <---------ANAC58                        <---------ANAC58 <---------------AtSPL8 --->DOF2        <----------DOF2                              <---------AtLEC2 --------------->AtSPL8 ----------DOF2  <---------DAG2                     <---------MYB52(1)--------->ANAC58--------->ANAC58   ggctttttcataatttcaacttttgcttctacgtaaaactaaaatgctaaatctgtttgctattgcatgactaagcaaataaatgtacaagaaaatatta  993200                                                                                     ------->PIF5                                                                                     <-------PIF5                                                                                    --------->TGA1a                                                                                    <---------TGA1a                                                                                    <---------O2                                                                                    <---------ANAC58                                                                                    <---------bZIP60(2)                                                                                   <------NtERF2                                                                                   <-----------------                                                                                  ------>NtERF2                                                                                <------NtERF2                                                                              --------->ALFIN1                                                                            <---------ANAC58                                                                            <---------bZIP60(2)                                                                            --------->bZIP60(1)                                                                            ========================bZIP_DOF                                                                            --------->TGA1a                                                        <---------ANAC58    <---------O2                                                        <---------ANAC55(1) --------->O2 ============                                                        --------->ANAC55(2) <---------TGA1a                                                ----------->HVH21           <---------ANAC46                                               <---------WOX13(1)           >>>>>>>>>>AtbZIP1                                              ========================================MYC_MYB                                              <-------GAMYB                 <---------ANAC58                                              ================================================MYC_MYB                                             <------MYB83            --------->ZAT14================bZIP_DOF                                             <---------MYB46(3)      --------->ZAT18--------->O2                                             <------MYB46(1)         <---------ZAT14================bZIP_DOF                                            <---------AtMYB61        <---------ZAT18<---------ANAC46                                        <---------ANAC58<---------ANAC55(2) <---------bZIP60(1)  <---                                        <---------ANAC46<---------ANAC58 ----------->TGA1---------->DOF2                                        <---------ANAC58<---------ANAC46 ----------->HVH21      -----                                      <-----------HVH21<-------TEIL <---------ALFIN1<---------ANAC58                                  --------->ANAC46<---------TOE2(3)--------->ZAT2----------->HVH21 -ICU4             --------------->AtSPL8 <---------MYB52(1)       --------->At4g35610--------->AtLEC2   caaaaaaaaaaaaaaaaacattttgtactcccttatacgctgtcgtttggttgacgatgcgtgatgaccagcacactgacgtggcgacgtgcaaagagat  993300                          --------->DAG2                          <---------------AtSPL8                          <---------------AtSPL3                         --------->DAG2                        ==========================bZIP_DOF                        ---------->DOF2                --------->TGA1a                <---------ANAC58                <---------O2                --------->O2                >>>>>>>>>>AtbZIP1                <---------ANAC58                ===================bZIP_DOF        <---------ANAC46                <---------bZIP60(2)          <---------ARR14(2)                <---------TGA1a         --------->O2                --------->bZIP60(1)     <---------bZIP60(2)                <---------bZIP60(1)     <---------O2                 <---------AHL20(2)            *TSS  --------->YAB1<---------ANAC46        <---------TGA1a            <-----------TBP    >>>>>>>>>>WRKY26  ----------->GT1    <---------ANAC46   <---------ANAC58  --------->ANAC58            >>>>>>>>>>WRKY43 <---------ATHB12   <------NtERF2       =========================================bZIP_DOF ---------->DOF2 ------TaNAC69(2) --------->ALFIN1      <---------ANAC58  --------->ANAC46        <---------ARR14(2) =========================bZIP_DOF      <---------ANAC46  --------->ANAC58        --------->ARR14(2) ----TEIL    ----------->TGA1        ----------->TGA1 --------->WRKY38(1) <------ZmHOX2a(1)      ---- ---->CCA1(2)----------->HVH21       ----------->HVH21--------->WRKY12---------->DOF2 >>>>>>>>>>WRKY38   acaatcgttatatcactgacgtggcgaaaaggtactggtatgacgtggatttagcgttgaacgaaacatatttaaaggactgcatatttgaccaaagtaa  993400                      <---------MYB52(1)                      --------->DOF5.7(2)               <---------MYB52(2)              ------>MYB46(1)            <---------MYB111(1)            <---------MYB55(2)            --------->AtMYB61            --------->MYB46(3)        --------->At4g35610            <---------MYB111(2)      --------->ARR14(2)           --------->MYB46(3)   <---------ANAC46        <---------ETT(2)    ------>MYB83----------->HVH21                                          --        <---------WRKY12    ------>MYB46(1)                                                     <----        <---------WRKY38(1) -------->P<---------At4g35610                                      <-----       --------->WRKY18(1)<---------MYB46(2)                                                ---------     <---------DEAR3(2)   <---------MYB111(1)                                  <------NtERF2<--------    <---------DREB2C(2)  --------->ANAC55(2)                                  --------->LBD16 <------NtERF2   --------->DDF1   <---------ICU4   <---------ARR14(2)                      <---------ANAC46------>NtERF2  <-----------HVH21<---------ATHB12  ------->TEIL                           <---------LBD16--------->ATERF1(1) <-----------RAV1(1)--------->YAB1  <---------CCA1(2)  <----------DOF2  <---------ICU4   ----------->HVH21 -------->CBF ------>MYB83<---------MYB59      <----------DOF2    ----------->GT1 ---------->DOF2----   acaatgtcggtccaccaactaatcgttacctactccttgtatctgaccgcttgagagcttttggagactggcaaaaatggcggagaaagatgcgacggcg  993500         ------>NtERF2        --------->ANAC58        --------->ANAC46        --------->TGA2(1)        <---------TGA2(1)        --------->ANAC58                                                               --------->At4g35610        <---------bZIP60(1)                                                            <---------At4g35610        --------->bZIP60(1)                                                            --------->ZAT2      <---------TGA2(2)                                                                <---------ZAT2     ----------->TGA1                                                                  ----------->RAV1(2)     ----------->HVH21                                ------>ZmHOX2a(2)              <-----------RAV1(2)  <---------ANAC46                                   <------ZmHOX2a(2)           ------>ZmHOX2a(2) ------->ALFIN1                                     <---------ARR14(2)         <---------ARR11(3) -----MYB46(3)                                      --------->ARR14(2)         --------->ARR11(3) ----ANAC46                 --------->ANAC58       <------ZmHOX2a(1)           <---------ARR14(2) >DEAR3(1)                  --------->ANAC58       =====================================HOX2a_HOX2a -DEAR3(1)            --------->At4g35610        <---------TOE2(3)             --------->ARR14(2) ----->ALFIN1    <---------ZAT6          --------->ANAC46                  --------->TOE2(3)   agtggcgatgacgccattagagttagcggtatgcaattcgcatacgaagttgaggatccaatattcttcgacttcaacctcgatcttccagctggttctc  993600                         <---------------AtSPL8                      --------->ARR14(2)                      <---------AGP1                      <---------ARR14(2)                      --------->ARR11(3)                      ------->TEIL               <------NtERF2              ------>NtERF2           <---------DEAR3(2)           <---------MYB46(3)           <------MYB83 ------>ZmHOX2a(2)                  <---------ANAC58           <------MYB46(1)                                 <---------ANAC58          <---------AtMYB61                                <---------ANAC46          <---------DEAR3(1)                         <---------GLK1(2)          --------->MYB46(2)                --------->HSFB2a(2)                                    <-          --------->MYB111(1)               --------->HSFC1(1)                                 ------          <---------MYB46(3)                <---------HSFC1(1)      --------->MYB52(2)        <------          --------->MYB55(2)     <---------YAB1      <---------ARR11(3)                 <---------ANAC46          --------->MYB111(2) <---------TOE2(1)      --------->ARR11(3)                 <---------ANAC58         <--------P<---------ATHB12  ------>ZmHOX2a(2)  <-----------GT1           <-----------GT1  <-         <---------MYB55(1)   <---------TOE1(1)     <---------RVE1(1)         <---------AHL20(2)  <--        <---------MYB52(1)   --------->SPL7 <---------HSFB2a(2)   <---------MYB52(1)    <---------ANAC58   gctgtcttctggttggtgccaatggatctggtacgatgatcgatttctagagagagattttccttgtagttagttttcattttttttctgtcttggggtc  993700         <------ZmHOX2a(2) --------TOE2(2)                                          <---------ARR11(3)    <---------TOE1(3) ----->HVH21                                              --------->ARR11(3)    <---------TOE2(3) -----HVH21                                         ---------->DOF2            ---------->DOF2 --------TOE1(2)                                ----------->GT1      --------->ATHB12      <--------- ---------RAV1(2)           <---------YAB1    ---------->DOF2<----------DOF2  <---------AHL20(2)   acaggttttggatcagcgattcgacttgttatgttttcggcgagaatggaaagttaaagacatcttttgtttgatttgatttaaagtttggaactttgaa  993800                                                                               <---------ANAC46                                                                  <---------ANAC58                                                                  <---------ANAC58                                                               <-----------RAV1(1)        <---------O2                                                            --------->ARR14(2) <------MYB83                                 <-----------GT1            <---------ARR14(2) <------MYB46(1)                             --------->AHL20(2)            <---------MYB52(1) <------MYB46(1)                             <---------AHL20(2)      --------->YAB1           <------MYB83<---------bZIP60(2)                            <---------AHL20(2)      --------->HSFC1(2)      <--------P    <---------bZIP60(1)                            <---------AHL20(1)      <---------HSFC1(2)      --------->ALFIN1  <------                            --------->AHL20(1)      <---------HSFB2a(1)    <-------GAMYB  --------->bZIP60(1) -DOF2                      --------->AHL20(2)      --------->HSFB2a(1) --------->LBD16   --------->O2   aattggccctatgcctctgcaatttcagaatttatttgccagtctgaaattggaatcatccgtttctgtcgttctggggttgggtttttttgacgtcgtt  993900  Previous    Next  AGI:  At1g03900.1    Description:  ATNAP4 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 4). Identical to Uncharacterized protein At1g03900 [Arabidopsis Thaliana] (GB:Q681Q7;GB:Q67YX5;GB:Q94B37;GB:Q9ZWB0); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G58600.1); similar to unknown [Populus trichocarpa] (GB:ABK94146.1); contains InterPro domain Adaptin ear-binding coat-associated protein 1 NECAP-1; (InterPro:IPR012466) Range:  from: 991138    to: 993117    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g03905.1    Description:  ABC transporter family protein. Identical to Non-intrinsic ABC protein 4 (NAP4) [Arabidopsis Thaliana] (GB:Q3EDJ0;GB:Q9ZWB0); similar to POP1 [Arabidopsis thaliana] (TAIR:AT5G44110.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40609.1); contains InterPro domain ABC transporter related; (InterPro:IPR003439); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593) Range:  from: 993399    to: 995783    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version