Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         --------->GLK1(2)                         <---------ARR14(2)      <---------GLK1(2)                          --------->ARR14(2)                                --      <---------ARR14(2)             <---------ARR11(3)                                           <--      --------->ARR14(2)             --------->ARR14(2)                                          <--- ------->At4g35610                   --------->ARR11(3)                                          <--- --------At4g35610         <----------DOF2      <------ZmHOX2a(1)                                ---- ----->DOF2                <---------DAG2    --------->At4g35610         <----------DOF2    <-------- -->At5g28300         <-----------GT1<---------ARR14(2)          --------->ICU4             --------- -DEAR3(1)       <----------DOF2    <---------CCA1(2)    <-----------RAV1(1)             ----------->HVH21   aagctgtagattctggtctctttgaaacccttttccacatatctcgcagaggaaacgatttgtggccataagtgtctttggagatagagctatgacctca  969700       ------>ZmHOX2a(2)     <---------ARR11(3)                     --------->ANAC55(2)     <---------ARR14(2)                     <---------ANAC55(2)         ----------->GT1     --------->ARR14(2)               --------->HSFB2a(2)         ------>ZmHOX2a(2)     <---------AGP1                   <---------HSFB2a(2)        <------ZmHOX2a(2)  <---------HSFB2a(2)          --------->YAB1                    --------->CCA1(2)  --------->HSFB2a(2)          XXXXXXXXXXXXXXXXXXXX>MIR826      <---------AGP1 ------->GLK1(2)               --------->AHL20(2)               --------->AGP1 -------GLK1(2)               <<<<<<<<<ARR2<-------TEIL         <---------ARR11(3) ------At4g35610            --------->WOX13(1)                  --------->ARR11(3) ------ZAT2              <-----------GT1 --------->ARR14(2)     <-----------ARR10                <--- ----->At4g35610 --------->ANAC58    <---------LBD16        ---------->DOF2           ------->TEIL -bZIP60(1)      --------->ANAC58  --------->GLK1(2)      ----------->HVH21          <---------AtLEC2 >bZIP60(1) <---------------AtSPL8<---------GLK1(2)     <---------ANAC55(2)  ---------->DOF2    -----   gcttctggatctatagagaacgaaatataacaatcaaattctggatacatatttgatcatgtgaaagatctaaacagtagaaagcatgcatgtttgtaga  969800                                                                   <---------AHL20(2)                                                                   --------->AHL20(1)        <-------                                                                  --------->ATHB51           --------             ---------->DOF2                               <-------GAMYB     ========================    ----------->GT1                  ----------->GT1     <---------TOE1(3)   ------>ZmHOX2a(2)   <---   <------ZmHOX2a(2)              --------->MYB52(1)     <---------TOE2(3) --------->ARR11(3)--------  <---------ARR11(3)           --------->At4g35610  --------->ATHB12       <---------ARR11(3)<------- ---ZmHOX2a(2)                 <---------At4g35610 <---------YAB1 --------->AHL20(2)     --------->AHL20(2) ---->ARR11(3)           <----------DOF2    --------->AHL20(2)    <---------AHL20(2)   --------->TOE2(3)   tcaagatcgaaaaaaaaaagaacatgacttttcagcaaacagaaaaaaaaatgttgattagggttgaattattttgtgatctctattaaacttaattaat  969900                                                                             --------->ICU4                    --------->ARR14(2)                                       <---------YAB1        --------->GLK1(1)                                                  --------->YAB1        <---------GLK1(1)                                                 <---------YAB1       <---------ARR14(2)                                                 --------->ICU4       --------->ARR14(2)                                               --------->YAB1      <------ZmHOX2a(1)                                                <---------YAB1   <---------LBD16  <---------ARR14(2)                                 --------->ICU4 --AHL20(1)       <------MYB83                                       --------->YAB1 ->AHL20(1)       <------MYB46(1)                                    <---------ICU4 ============HOX2a_HOX2a                                            --------->ICU4 ------ICU4  <---------LBD16                            <-------TEIL<---------YAB1 ->AHL20(2)  --------->LBD16                 <------ZmHOX2a(1)    --------->YAB1 --AHL20(2) <---------LBD16               <------ZmHOX2a(1)       <---------ICU4              <------   tgttaccaggatttccagggaggtttctcttcttcttgacaagaggaggattgagggattcatgttgatcatgatgatgatgatcaacatgatcagttgt  970000                  ==============================HOX2a_HOX2a                  ------>ZmHOX2a(1)                 --------->ANAC46                <-----------HVH21              <---------ARR14(2)              --------->At4g35610              --------->ARR14(2)              <---------At4g35610             --------->GLK1(1)                <-------GAMYB     <----------DOF2<---------ALFIN1     ------>ZmHOX2a(2)                                     ------     --------------------->WRI1        <---------ARR11(3)                                    -------- ---MYB46(3) <---------CCA1(2)         --------->ARR11(3)                    <-----------RAV1(1)-----   tgatgagctttggacatatcctccactacttgaaattgtctgatcttcagttgtcatgtcttcttcttggacaaaagttttgttggaagagattgaaaag  970100      <---------AHL20(2)  --------->AHL20(1)                                                                   <---------YAB1  <---------AHL20(1)                                                                --------->ICU4  --------->AHL20(2)         *TSS     <---------TOE2(3) <---------AHL20(2)     <---------REM1(1)  <---------AHL20(2)    --------->ALFIN1               <---------AHL20(2)--------->GLK1(2) --->DAG2             --------->CCA1(2)     --------->ICU4               <---------ARR14(2) -->DOF2<---------TOE2(3)    <------ZmHOX2a(1)   ----------->GT1        <---------GLK1(2) ------>GT1  --------->AHL20(2)     ---------->DOF2    --------->AHL20(2)--------->ARR14(2)   gtaattaattaagttttaaataagagatggaggatgagcaaaggtaatgaagagaaaataaatagaaatacttagaatctgatgtagttatgaatgagag  970200                                                                                 --------->YAB1                                                                                 --------->AHL20(2)                                                                               --------->AHL20(1)                                                 <---------ALFIN1             --------->YAB1                                  --------->AHL20(2)                 --------->ZAT18                                <----------DOF2 <---------REM1(2)    <---------ZAT14                       <---------ANAC58     --------->ANAC58         --------->ZAT14                       <---------ANAC46     --------->ANAC58         <---------ZAT18                       <---------ANAC58     --------->ANAC46       <---------------AtSPL8  <---------                   <------------CBF       <-----------GT1   ----------->RAV1(1)--------->AHL20(2)             ----------->GT1    <---------DAG2  --------->ZAT14    --------------->AtSPL8------>ZmHOX2a(1)      ---------->DOF2 <---------MYB46(3)<-----------GT1---------->DOF2      --------->AHL20(2) <-----   gcaaacacaaaagataagttatattgggtgatcactttatatatacaccctacacacttaagccccatatgtgtactaaaaaataatattcctctttctt  970300                                                         <---------ICU4                                                         -------->ATHB1                                                        <---------ATHB51             --------->AHL20(2)                       <---------ARR11(3)               --------->ICU4               <---------AHL20(1)                       <---------AGP1             --------->YAB1        <---------AHL20(2)                 ------->TEIL                    <---------YAB1       <---------CCA1(2)   --------->AHL20(2)              --------->ANAC58            <---------At4g35610<-----------GT1         <---------AHL20(2)              --------->ANAC58           <---------TOE1(2) <---------YAB1     ---------->ID1        --------->AHL20(2)          <-----------HVH21--------->AHL20(2)<---------AHL20(1) <---------AHL20(2) -DOF2--------->AHL20(2) ------>ZmHOX2a(2)<---------ZAT2<---------AHL20(2)    <-----------GT1 -----DOF2    --------->ANAC46     <-----------RAV1(1)  --------->AHL20(2)   <-----------GT1        -   tcaaacaaaaaaatataagcaccttgatctgtaagaactgtcgcagctattgtcataaattattaaactttcatatatttttcccattttatttatattt  970400                   --------->ALFIN1                  <-------GAMYB                  <------NtERF2                 <---------MYB46(3)                                                      --------->ANAC58                <---------ANAC46         ----------->GT1                                 --------->ANAC46                <---------DREB2C(2)     --------->HSFB2a(2)                              --------->ANAC58                <---------DEAR3(1)      <---------HSFB2a(2)<------MYB83       <-----------HVH21     ---------->DOF2       <-----------GT1           <---------YAB1          <---------ANAC58 --------->At5g28300      --------->AHL20(2)      <---------AHL20(2)         <---------ANAC58-------- ---------->GT1 <---------RAP2.6(2)    <---------LBD16     <------MYB46(1) --------->ALFIN1--------->ANAC46   cgcagttaaaagttaatggcggtggaaattaactatatttatctggaaatatttgattatttggtttttcagtggcagtgcgtcatgacacacacaaaag  970500                                      --------->ATHB51                                      <---------ICU4                                     --------->ICU4                                     <---------YAB1                                 ------>ZmHOX2a(2)                                         --------->AHL20(2)                               --------->ARR11(3)    <---------MYB52(1)   ----------->GT1--------->TOE2(3)                               <---------ARR11(3) --------------->AtSPL8<-----------RAV1(2)<---------AHL20(2)                             <---------YAB1     <-----------GT1--------->YAB1      <-----------GT1           <----------DOF2 --------->YAB1   <----------DOF2  <-----------GT1      --------->AHL20(2) -->DOF2  <---------DAG2  --------->ICU4 <-----------GT1<----------DOF2------>ZmHOX2a(1) <----------DOF2   tttctatgtctgcctttttctatttggaatgatgatctcattatttcttttctccgttctttttttcatcatcctcaggtaaaattaacttctttaattg  970600  Previous    Next  AGI:  At1g03840.1    Description:  MGP (MAGPIE); nucleic acid binding / protein binding / transcription factor/ zinc ion binding. similar to NUC (NUTCRACKER), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G44160.1); similar to Os01g0242200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042553.1); similar to hypothetical protein OsJ_001036 [Oryza sativa (japonica cultivar-group)] (GB:EAZ11211.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) Range:  from: 967502    to: 970129    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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