Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               <---------ANAC58                 <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             <---------ANAC58                ---------->DOF2    <xxxxxxxxxxxxxxxxsmallRNA(fl3)         --------->YAB1                 --------->YAB1  ---------->DOF2                        ------->TEIL                  --------->YAB1--------->ANAC46 ------->YAB1<---------ANAC46     --------->YAB1              <-----------GT1       *TSS ----->GLK1(2)                   <------ZmHOX2a(2) --------->AtMYB61<----------DOF2--------->ANAC46   atcagaaagaacgtagcgagttgaaatttttgtcgatcatatgaatcaaaagaccatcaccgatatacaactttcatcatattctacacaaaacctcttg  937500              --------->AtMYB61      --------->AHL20(2)                                                      <------NtERF2      <---------ATHB51                           <-------GAMYB              <---------DEAR3(1)      <---------AHL20(2)<---------TOE2(3)   <------------CBF               <---------LBD16      <---------ATHB12 ---------->DOF2     --------->ATHB12     ----------->GT1                 <----  --------->AHL20(2)--------->TOE2(3)     <---------YAB1<----------ID1<----------DOF2       <------ZmHOX2a(1)   aaaatcaaataattcaccaaaacattaaagaaaaaccaaaaaccaagattgggttgaatcgacaaatggtgacttttctcggcgttatcaagaaggagat  937600                         --------->TOE1(3)                         --------->TOE2(3)                                                          <                      --------->GLK1(1)                                                           <--                 --------->ANAC58             ----------->GT1                                     ---                 --------->ANAC46         --------->ATHB12                                        <--                 --------->ANAC58  ---------->DOF2                                               <---           --------->CCA1(2)    --------->TOE1(3)       --------->AHL20(2)                       ---- -----WOX13(1)<-------TEIL      --------->TOE2(3)       --------->YAB1                      ------>NtERF2   tgctatatataagagatgcacgagaaaccctaaacctaaaagcatgtttggaaacaaataatatttgggcttctcttggatgctattcgaactcggccca  937700       ----------->RAV1(1)                                    <-------MYC4  <---------At5g28300                        ---------->ID1   <-------MYC2 <-----------GT1                        --------->ARR14(2)    ------->MYC3 ---------YAB1                          <---------ARR14(2)    <-------MYC3 -------ICU4                          --------->LBD16         ------->MYC2      <----------DOF2 ------>ATHB51                       --------->ANAC55(2)  --------->ZAT14   <-----------GT1 ------HAHB4  <---------ZAT14       <-----------------AGL2<---------ZAT18  <-----------GT1 ------YAB1   --------->ZAT14       <-----------------AGL3--------->ZAT18 <---------GLK1(1) ----->ICU4   <-------TEIL          <-----------------AGL1<---------ZAT14------->TEIL   ttattactgccacaagtacagtttgggcttcgtttctatccgtatttggcccattaaaactgcacatgtataatgtatttccctttctagcctcttattt  937800                                                                        --------->ANAC58                                                                        --------->ANAC58                                                                       --------->DAG2                   --------->ANAC58                             <---------HSFB2a(2)                 -                   --------->ANAC58               <---------DAG2--------->HSFC1(1)                  -               ------->GAMYB                <-----------GT1     --------->HSFB2a(2)            ------            --------->MYB52(1)           <---------ICU4         <---------HSFC1(1)             ------         --------->YAB1                 --------->ICU4      <---------GLK1(2)   <----------DOF2------      --------->YAB1            <------------CBF  <----------DOF2     ---------->DOF2  <----------DOF2   tcttcaaattagaataacagcaagtaagttttcaaattgctaaatattacgactttatttcagtttctcgaaaaaagcaagtctttttcctttgctctcg  937900                                                                                    <---------ANAC58                                                                               <---------ICU4                                                                              <---------YAB1                                                                            <---------ICU4                                                                           <---------YAB1                                                                         <---------ICU4     <------ZmHOX2a(2)                                                  --------->ICU4           ---- -------->ANAC58                                                    <-----------TGA1<---------ANAC46 -------->ANAC58                                                   --------->ANAC46 <---------ANAC58 --->ANAC58                     <----------DOF2            <--------P   <---------YAB1           ---- --->ANAC46              <-----------GT1       ---------->DOF2     --------->ANAC55(2)           ---- --->ANAC58         <-------GAMYB   ---------->DOF2     <---------AtMYB61--------->YAB1   <-------TEIL   caacgcgatcgattagcgatgtcgttgttacacactttcaaagagacattgaagccctgtggtagttttccgtcatcatcatcgttgcgagtttcatcca  938000            --------->DEAR3(1)           <---------HSFB2a(1)           <------------AtMYB77                                 <---------YAB1           --------->DEAR3(2)                           <---------ANAC58           --------->MYB46(3)                           <---------ANAC58           --------->HSFC1(2)                     <---------GLK1(2)           <---------HSFC1(2)                    --------->HSFC1(2)           --------->HSFB2a(1) <-----------ARR10 --------->At4g35610          <-----------GT1 -------         --------->ARR14(2)    <---------ARR14(2)<---------HSFC1(2)       <----------DOF2     ------- --------->ANAC58         ------>MYB46(1)     --------->At4g35610         <---------DAG2   --------->ANAC58 --------->ANAC58         ------>MYB83        <---------At4g35610  <---------YAB1    ---------->DOF2 ----->ANAC58   <---------HSFB2a(2)           --------->ZAT2--------->HSFB2a(2)   --------->ANAC46 ----->ANAC58   --------->HSFB2a(2)           <---------ZAT2<---------HSFB2a(2)<---------At5g28300 ----->ANAC46  <---------ETT(2)--------->ARR14(2)<---------At4g35610   <-----------GT1     --------->ANAC58   cacaagaattggaaccgtcgagaaaacctcccaaatcgtcgctctcgcagcagcttctgcgtctcgatgattcttactttttaccctcaaagcacgaatc  938100                                  --------->MYB52(1)                               --------->YAB1                               <---------ICU4                              <---------YAB1                           <---------YAB1                       <---------ARR11(3)   --------->TOE2(3)   --------->ARR14(3) --------->ARR11(3)    <---------ARR14(3)                                                           < <---------ARR11(3)    <---------GLK1(2)                                                           -- -->GLK1(2)            --------->ARR11(3)                                         --------->At4g35610 >TEIL                 <---------ARR14(2)         ---------->DOF2         >>>>>>>>>TBF1            <-   taaaatctcaaaaacccaagtcgaagattttgatcataacgaagatgatcacaaaagaaacatcaagttcgacgaagaagaagtagatgaagacgatgag  938200                     --------->LBD16                --------->GLK1(1)                <---------GLK1(1)                              --------->MYB46(3)               ----------->HVH21                        --------->ICU4             --------->LBD16                            ------>ZmHOX2a(1)                         ---            <---------HSFB2a(2)--------->LBD16      <---------MYB52(1)                           <---           <---------LBD16   <---------LBD16       --------->LBD16                               <--- ------ZmHOX2a(2)  <---------LBD16               <---------LBD16       <---------At4g35610 --------->GLK1(2) ------->ARR11(3)<---------ARR14(2)       >>>>>>>>>>WRKY63    ------->TEIL                 <---------ARR14(2) --------ARR11(3)--------->ARR14(2)       <-----------GT1    <-----------GT1              <---------GLK1(2)   agatcaattgaattcgggagacccgggttaagccgggctgaatttgactattccggtccttatgaaccacttatgctgtcatcaattggagagattccga  938300                                                                                        --------->ATHB51                                                                                        --------->ATHB12                                                                                        <---------AHL20(2)                                                                                        --------->AHL20(2)                                                                                       <---------AHL20(2)                                                                                 <---------HSFC1(1)                         <----------DOF2                                         <---------HSFB2a(2)           <---------AHL20(2)                                                    --------->HSFB2a(2)           <-----------GT1                                                      <---------LBD16 ------>YAB1 <---------ANAC58               <---------AHL20(2)                --------->GLK1(2) ------ATHB12<---------ANAC58  <----------DOF2                   <---------MYB46(3)    --------->ICU4 ---ZmHOX2a(2)     ---------->DOF2      <---------YAB1    --------->ALFIN1   <---------GLK1(2)    <--   tcatacatgttattttcttaccaaagtctttaacttttgctcatgtttaatggaactcaagtgttgatggttcttctcaaattctggaaattatttgaat  938400  Previous    Next  AGI:  At1g03746.1    Description:  snoRNA. snoRNA Range:  from: 937400    to: 937484    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g03750.1    Description:  CHR9/SNF2/SWI2 (chromatin remodeling 9); helicase. similar to ATRAD54/CHR25 (ARABIDOPSIS HOMOLOG OF RAD54), ATP binding / DNA binding / helicase [Arabidopsis thaliana] (TAIR:AT3G19210.1); similar to hypothetical protein OsJ_017022 [Oryza sativa (japonica cultivar-group)] (GB:EAZ33539.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79218.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69763.1); contains InterPro domain SEC-C motif (InterPro:IPR004027); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPr Range:  from: 937919    to: 941161    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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