Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          <---------ICU4                                                                       <---------YAB1                                                                      --------->TOE2(3)                                                                     <--------HAHB4                                                                     --------->ATHB12                                                                     --------->YAB1         ------->MYC3                                                <---------ICU4         <-------MYC3                     <<<<<<<<<TBF1             --------->ICU4      <---------ALFIN1            <---------AHL20(2)                <---------ATHB12   --------->PCF2                 <---------YAB1            ---------->DOF2 ---------RAV1(1)                --------->YAB1<----------DOF2      <---------YAB1 --->GLK1(2)                     <---------AHL20(1)      --------->ANAC58            --------->ZAT14 ---GLK1(2)    ---------->DOF2   --------->AHL20(2)      --------->ANAC58     --------->TOE2(3)   ctgtagccccacatgtttaaagactacaaactcaatattatttcttcttcttttaaaacgagcaaagctaatcattaatacattaactacagactaaacc  920600              --------->SPL7            <---------SPL7            --------->ZAT14                                --------->AHL20(1)          --------->ANAC46   <---------WRKY38(1)           <---------AHL20(2)          --------------->AtSPL8                           <---------AHL20(1)        <---------ALFIN1     <---------WRKY12              --------->AHL20(2)        --------->ANAC46   <------ZmHOX2a(1)  <---------RVE1(1)                          <----------DOF2   <---------ARR14(2)    --------->MYB59     <---------GLK1(2)                      <-----------GT1   --------->ARR14(2)  <<<<<<<<<MYB98        <---------ARR11(3)                <------ZmHOX2a(1) ----------->GT1 --------->ANAC46            --------->ARR11(3)              --------->MYB59   cagaggttacacaccgtacacctaagttaggacaacgcttcaaaacagattttttgttcattttattatgtcatcaaattaggaattatctctttaacaa  920700                                         ---------->DOF2                                     <---------ICU4                                     <--------HAHB4                                     --------->ATHB51                                     -------->HAHB4                                     --------->YAB1                                     <--------ATHB1                                    <---------YAB1                                    --------->ICU4                                    <---------ATHB51                                                <                                  --------->YAB1                                                 <---                         <---------YAB1<---------YAB1<---------ANAC58                          <-----                      <---------AHL20(2)--------->AHL20(2)                                    -------                      <---------YAB1--------->AHL20(2)                                        <------                      --------->AHL20(2)<---------AHL20(2)          <---------TOE2(3)       ---------                <---------DDF1   <---------YAB1      <---------ANAC58     <-----------GT1  <---------YAB1   atgaaatttgagtaataccgacatattattaatctataataattaaagaatattagcttgaaaaacgtctatggttttactaaaaatttagttttcatta  920800                                                                             ------>MYB83                                                                           --------->AtMYB61                                                                           --------->MYB46(3)                                                                           <---------MYB111(1)                                                                           ------->GAMYB                                                                          --------->DEAR3(2)                                                                          <---------MYB52(2)                                                                          <---------MYB55(2)                                                                          <---------ATHB12               --------->ARR11(3)                                         --------->MYB46(3)               <---------AHL20(1)                                        --------->ANAC58               --------->AHL20(1)                                        ------>MYB46(1)     <---------ANAC58                                                    -------->P--------->MYB46(3)     <---------ANAC58                                                    ------>MYB83    ---------->ID1                       <---------ANAC58                --------->ANAC58 ----------DOF2<---------ARR11(3)        <---------ANAC58 <---------At4g35610-------->P ------YAB1   --------->CCA1(1)          <---------AtLEC2 --------->At4g35610------>MYB46(1) ----ICU4     --------->RVE1(1)     <---------ICU4        <-------GAMYB  --------->ANAC46 -->ICU4  --------->AHL20(2)  ----------->GT1     --------->ALFIN1      ------>MYB83 ---YAB1  <---------AHL20(2) ----------->GT1<---------WRKY18(1)         ------>MYB46(1)<---------ALFIN1 >YAB1<----------DOF2      ---------->DOF2 ----------->HVH21         --------->ANAC46----------->RAV1(1)   ttctttggcttttttaatatcttgaaacaaaaagataaatattgcatgaccggtggagacagttgaagaaaacccaaccaacccatccaacacttgaata  920900                          <---------ANAC58                          --------->ANAC55(2)                          <---------ANAC55(2)     *TSS  xxxxxxxxxxxxxxxx>smallRNA(i)            <----------DOF2             --------->TOE2(3)         <-----------GT1  <---------ANAC46     <-----------GT1                      ----------->GT1   <-------TEIL           <---------ANAC58    <---------ICU4           <----------DOF2 <---------AHL20(2)   acatattcattttactttggtttatatttcgtgattttgttttcttaattatctctctctctctctccctctccttttctcttccatagttaaattctac  921000                                                                  <------MYB46(1)                                                                  <------MYB83                                                                 --------->MYB46(2)                                                                 --------->MYB111(1)                                                                 --------->MYB111(2)                                                                 --------->MYB59                                                                 <---------MYB46(3)                                                                 <---------AtMYB61                                                                <---------MYB55(1)                                                               <---------ANAC58                                                               <-------GAMYB                                                               <---------ANAC46                                                              <---------MYB46(3)                     --------->ANAC46                         <---------DEAR3(2)                 --------->CCA1(2)                            <------MYB46(1)                 <------ZmHOX2a(2)                           --------->MYB55(2)                --------->ARR14(2)                           <---------MYB46(3)                  <---                <---------ARR11(3)                        <---------ANAC58                    ------>NtERF2                --------->ARR11(3)                        <---------ANAC46              <---------ANAC58                <---------ARR14(2)                        <---------ANAC58              <---------ANAC58                --------->AGP1                           <---------MYB46(3)         <----------DOF2               --------->GLK1(1)                         --------->MYB55(2)       <------NtERF2 <----               <---------GLK1(1)             --------->MYB52(1)<---------ANAC58  --------->LBD16<----         <----------DOF2    <---------ZAT14  ---------->DOF2--------->ALFIN1    <---------RAP2.6(2)    <-----------GT1  --------->ANAC58        <---------DOF5.7(2)<--------P     <---------LBD16-------   <-----------GT1   --------->ANAC58      --------->DOF5.7(2)<------MYB83  <----------DOF2  <-------   agttttaaactctttggagatccaagaaactaaactgatggtgaagttaacgcagagattgggtgggttggtactgcgatttgcggcattttgtgccgcg  921100                                    <------ZmHOX2a(2)                                   <---------ARR14(3)                                   --------->AGP1                                   <---------ARR11(3)                                   --------->ARR11(3)                                   --------->ARR14(2)                             ----------->HVH21                            --------->At5g28300                            --------->LBD16                           <---------ANAC46                         ------>MYB83------>ZmHOX2a(2)                         ------>MYB46(1)       <---------ARR14(2)--------->ZAT2     <---------MYB46(3)<---------MYB55(2) <------ZmHOX2a(1)     --------->MYB46(3)           <---------At4g35610 ------MYB52(1)       --------->At4g35610    <----------DOF2                         <---------ANAC46 -------HVH21    --------->YAB1    <---------ARR14(2)     <---------STY1(1)          <---------ANAC58 ------DOF2      <---------ICU4    <-----------ARR10--------->At4g35610             <------NtERF2 --- -->LBD16       <---------ATHB12   --------->ARR14(3)     --------->STY1(1)       <---------RAP2.3(3) --ANAC46       --------->ICU4 ---------->DOF2  <-----------HVH21     ---------->DOF2<---------ANAC58   ttaggagcggttatcgcaatgatcaccagccgtgaaagatcttccttctttgtcatctccctagtggctaagtatagcgatttggctgcgtttaagtgag  921200                              <---------YAB1                                                     <---                           --------->AHL20(2)                                                 <------MYB83                     --------->ANAC55(2)                                                      <------MYB46(1)                     --------->O2                                                            --------                     <---------TGA1a                                                        <--------                     <---------ANAC58                                                       <--------                     <---------O2                                                      --------->ALFIN1                     <---------ANAC58                                                  ==============                     <---------ANAC55(1)                                               <-----------RAV1(1)          <----------DOF2  <---------AHL20(2)                                         ------->MYC2          =====================bZIP_DOF                          --------->YAB1       <-------MYC3     ==========================bZIP_DOF                         <---------ATHB12      <-------MYC2     <----------DOF2 <---------ANAC46                          <---------TOE2(3)      ------->MYC3 <-  <-----------GT1    <---------bZIP60(2)           --------->ARR14(2)               <---------TOE1(2) ------>GLK1(2)   ----------->HVH21                <---------ARR14(2)  <---------AHL20(2)----------->HVH21   aatttttcttttctttctatttgacgtgttttattagagtatttagagaagtgtatatgtattctaatgatatgttattgcattcgcatgtgtggcaggt  921300   <---------YAB1 ----TEIL ->MYB111(1)                                                           <---------TOE2(3) -ANAC46              <-----------GT1                                  <---------YAB1  <---------ANAC46 ---RAV1(2)---------->DOF2         <----------DOF2                  <---------YAB1     <-----------RAV1(1) ===RAV------>ZmHOX2a(2)   <---------MYB52(1)                 ----------->GT1 <-------TEIL ---------DOF2       ----------->HVH21                 ---------->DOF2 <---------HSFB2a(2)       ----   actttgtgatcgcaaatgcgattgtgaccgtttatagctttctcgttctgtttcttccaaaggagagtttattatggaagttcgtagttgtgttggacct  921400                                                                          <---------AHL20(2)                                                                          --------->AHL20(2)                    --------->AHL20(2)                                  --------->AHL20(2)                    <---------AHL20(2)                                  <---------AHL20(2)                  <----------DOF2                                     --------->AHL20(2)        --------->AHL20(2)                                            <---------AHL20(2)        --------->AHL20(1)                                          <---------AHL20(2)        <---------AHL20(2)                                          --------->AHL20(2)        <---------AHL20(1)                                        <---------AHL20(2)       --------->YAB1                                             --------->AHL20(2)       <---------AHL20(2)                                       <---------AHL20(2)       --------->AHL20(2)                                       --------->AHL20(2)   <---------AHL20(2)                                         --------->AHL20(2)   <---------AHL20(1)                                        <---------AHL20(1)                 <----   --------->AHL20(1)                       --------->YAB1   --------->AHL20(1)           --------->CCA1(2)   --------->AHL20(2)   <-----------GT1  <---------CCA1(2)  --------->AHL20(2)          <<<<<<<<<RAP2.2 ------->GT1<-----------GT1          <----------DOF2      --------->AHL20(2)   <-----------GT1<------   ggtaattaattatattacctctttaattacattcaacttctttctatcttgacagttcaaaaatatatatatatatatatataacaatttagatataaac  921500  Previous    Next  AGI:  At1g03687.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO69730.1); contains InterPro domain DTW (InterPro:IPR005636) Range:  from: 918299    to: 920507    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g03700.1    Description:  integral membrane family protein. Identical to UPF0497 membrane protein At1g03700 [Arabidopsis Thaliana] (GB:Q9LR57); similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT4G03540.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69735.1); contains InterPro domain Conserved hypothetical protein CHP01569, trans-membrane plant (InterPro:IPR006459); contains InterPro domain Protein of unknown function DUF588 (InterPro:IPR006702) Range:  from: 920950    to: 921901    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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