Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    <---------LBD16                                                                         --------->bZIP60(2)                                                                    --------->ANAC58                                                       --------->At4g35610  ----------------->AGL1                                                       <---------At4g35610 ---------->ID1                                                    ------>ZmHOX2a(1)    --------->O2            <---------WOX13(1)                  --------->ZAT14     --------->ANAC58            <----          --------->ATHB12                      <---------ZAT14   --------->MYB52(1)   <---------GLK1(1) ------HSFB2a(2) ---------->DOF2       ------>ZmHOX2a(1)          <---------DOF5.7(2)  --------->GLK1(1)   gagaaatagcattgatttacaaagacgagagaacatacttcctgtagcagtgtcctgagcttcacagataacgcctcgtcgtaatcgggaaaccctagaa  917700                                                   ----------->RAV1(1)                                                --------->ANAC46                                                ------>NtERF2                                               <---------LBD16                                               <---------ETT(1)                                 <----                                  --------->ARR14(2)                                        <--------                                  <---------ARR14(2) <---------ALFIN1                      <------NtERF2                           --------->ARR14(2) --------->RAP2.6(3)                         <---------DEAR3(2)                    --------->CCA1(2)       <---------ARR14(2)                            ------>NtERF2           <---------YAB1  <---------ARR14(2) <---------LBD16                            <---------DEAR3(1)   --------->HSFB2a(2)--------->ANAC58      --------->ARR14(2)       <---------ANAC46    <---------At1g77200   <---------HSFB2a(2)--------->ANAC58--------->At4g35610          <-----------HVH21   <-----------HVH21 -----GLK1(1) --------->CCA1(2)------>ZmHOX2a(1)--------->LBD16 --------->At4g35610   --------->ANAC46   ttcttcgagagtgaagatagagaaacgcgagtcctcaatccgctcgattccggcaacacagagaacatctgtcgagtagagaaggaacccgtcggcgagg  917800                                               <-------MYC3                                               <-------MYC2                                               ------->MYC3                                               <-------MYC4                                               ------->MYC4                                               ------->MYC2            <---------ANAC58                                  --------->SPL7        >>>>>>>>>>>>>>>>>LFY                                 <------NtERF2--------->TGA1a          <---------ANAC58             ----------->HVH21   ------>NtERF2--------->O2         <---------ZAT14   <-----------ARR10            ----------->HVH21    --------->At4g35610   --------->GLK1(2)            <---------SPL7<---------O2        <---------ANAC46                 <-  <---------GLK1(2)      <---------GLK1(1) <-------TEIL--------->RAP2.6(2)                    ------- --ZmHOX2a(1)--------->WRKY12 <---------LBD16 <---------TGA1a   <---------ANAC46           --------->ANAC58 -ANAC46 <---------CCA1(2)    --------->At4g35610    <---------At4g35610                   --------->ANAC58   aagcgattctcatctctgaccggatagaaatcggcggacgggaagtacacgtgtaagcagccattgttgtgtagcgagagaagagatagagagaagcaat  917900              <-------TEIL             --------->ARR14(1)            --------->ARR11(1)                                                                -------      --------->ANAC58                                                                      ---------      --------->ANAC46                                                           --------->ANAC46      --------->ANAC58                             --------->MYB52(1)            --------->ANAC58    --------->ANAC46                       <---------ICU4                        --------->ANAC58  --------->ANAC46                         --------->AHL20(2)                   --------->LBD16 --------REM1(2)                           --------->YAB1                     --------->TOE2(2) -->WOX13(1)<---------GLK1(2)        ----------->GT1                          --------->TOE1(2)  <---   ctacacacacgatagattcgatttcttcttgagtcccaaatgtaataatatccaaacgaagaagatgaacaaaaacaaaacccacgaaaatgagagatag  918000                                                                               <---------AHL20(2)                                                                               --------->AHL20(1)                                                                               <---------AHL20(1)                                                                               --------->AHL20(2)                                                                           <---------AHL20(2)                                          <----------DOF2        <---------AHL20(2)                                       <-----------GT1          *TSS      --------->AHL20(2)                           <---------TOE2(3)                    --------->AHL20(2) -->CCA1(2)      <---------WOX13(1)<----------DOF2          --------->AHL20(2)--------->AHL20(2) >CCA1(2)  <------ZmHOX2a(1) <------ZmHOX2a(1)              <---------AHL20(2)<---------AHL20(2)  <-- ---ZmHOX2a(1)----------->HVH21    ------>ZmHOX2a(1)<---------YAB1 <-----------GT1       <---------YAB1   gagaagattaagaggagtgactgattttttaggaatccttttttctttagagctactattgtttaattttatccgattaaataaattccctattattcaa  918100                           ---------->DOF2                 <------NtERF2                <---------At4g35610                <------NtERF2               ----------->RAV1(1)                                              --------->AHL20(2)               --------->RAP2.3(2)    <---------TOE2(3)                      --------->WOX13(1)    --        <------------CBF--------->TOE2(3)    ---------->ID1     --------->AHL20(2)                <--    --------->ZAT6    <-------TEIL   --------->YAB1<---------LBD16         --------->MYB46(3)   ----- -------ARR11(3)--------->LBD16      --------->AHL20(2)         <---------AHL20(2)      <---------ANAC46   gctctaagactattgggccgcagtttcattaaagcccattaatatttctcgttttcggaaaaacaaaaaattatcgaaccaattaacttgaagtgtatca  918200                                                                                 --------->HSFB2a(2)                                                                      -------->ATHB1                                                                      --------->YAB1                                                                      <---------ICU4                                                                     --------->ICU4                                                                     <---------AHL20(2)                                                                     <---------ATHB51                                                                     --------->AHL20(2)                                                                  <---------AHL20(2)           --------->ZAT18                                        --------->AHL20(1)         <---------At4g35610                                      --------->AHL20(2)      ---------->DOF2                                     --------->LBD16        <---------HSFB2a(2) <---------TOE1(3)                   ------------>CBF    --------->ANAC46      ------>ZmHOX2a(1) <---------TOE2(3)              ---------->DOF2          ----------->GT1 <---------ICU4 ------->YAB1                --------->TOE2(3)       -------->P  <---------AHL20(2)                *TSS -------ATHB12             <-------TEIL         <-----------GT1  --------->AHL20(2)            ------ ---->WOX13(1)         --------->MYB52(2) --------->YAB1<---------LBD16 <---------YAB1        -------   atcaaggttaaagctcactgggccttagtttcattaaagcccaatagtattcacttaccccgtaaaattaaattattattcctcgagaagcccaaacagt  918300                                                                  <---------MYB52(1)                                                                 --------->At5g28300                                                                --------->RRTF1(2)                                                                --------->RRTF1(3)                                                                --------->RAP2.3(2)                                                                --------->RAP2.6(2)                                                               --------->RAP2.3(1)                                                              ------>NtERF2                                                             --------->DEAR3(1)               <------                                    --------->GLK1(1)        --------->ANAC46                 <------       <---------ANAC58     --------->LBD16                <---------At5g28300<-----------RAV1(1)       <---------ANAC58    --------->ANAC46               <-----------GT1   <---------ZAT2    <------      <-------TEIL      <---------ARR14(2)              <-----------HVH21   <---------At4g35610 --->At5g28300          --------->GLK1(2)    <-----------HVH21--------->ABI4(1) <---------MYB52(1) ---->GT1               --------->ARR14(2)  --------->ANAC46--------->MYB46(3)<---------MYB46(3)  <--   aaaaacgatgcgttgtatcgctggagcatccgtagccgatttctctccgtcgctactgtttcaccgccgtaatctcgtagctgttggccagagattgctt  918400                                                                                     <-----------HVH21                                                                                     <---------ARR14(2)                                                                                     <---------SPL7                                                                                    <---------ANAC58                                                                                    <---------ANAC58                                                                              <---------ARR14(2)                                                                              --------->ARR14(2)                                                                             <------NtERF2                                                                            --------->LBD16      ------>ZmHOX2a(1)                                                    <---------ANAC46 ---ANAC58                                                                <---------LBD16 ---ANAC46                                                              --------->ALFIN1  <---------MYB52(1) ---ANAC58     <---------ANAC58 <---------ARR14(2)                   <------ZmHOX2a(1)   --------->LBD16 -------YAB1   <---------ANAC58 --------->GLK1(1)       --------->YAB1--------->ALFIN1 --------->SPL7   atgacttcctcgattttgcgttctcatacgagggaattcgacgtttgcgatgaaggaatcatctcggtagaggagtggcggaaatggggtccggtgtctc  918500                    <---------GLK1(2)             <---------WRKY12                <---------ANAC58            <---------AtMYB61            --------->WRKY18(1)              <---------ANAC46        --------->ARR11(3)           --------->At5g28300            --------->HSFB2a(2)        <---------GLK1(2)    --------->ANAC58           <--------ZAP1                  <---------HSFB2a(2)        <---------ARR11(3)   --------->ANAC58           <-----------HVH21             <---------LBD16 <---------GLK1(2)             <------NtERF2        --------->At4g35610            --------->ARR11(3)--------->ARR14(2)       --------->ICU4        --------->LBD16            ---------->DOF2       <---------ARR14(2)       <---------AtMYB61        <---------LBD16      --------->ATHB12<---------ANAC58    <---------MYB52(1) xxxxxxxxxxxxxxxxx   catttccatccgcggtcaaacagattgtggatgatttgaaagttctggagtgcaaattggattctccgatagattttggtggtaatggtggcaagttaca  918600  Previous    Next  AGI:  At1g03680.1    Description:  ATHM1 (Arabidopsis thioredoxin M-type 1); thiol-disulfide exchange intermediate. Identical to Thioredoxin M-type 1, chloroplast precursor [Arabidopsis Thaliana] (GB:O48737); similar to ATHM2 (Arabidopsis thioredoxin M-type 2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT4G03520.1); similar to Thioredoxin M-type, chloroplast precursor (Trx-M) (GB:Q9XGS0); contains InterPro domain Thioredoxin family (InterPro:IPR015467); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Thioredoxin fold (InterPro:IPR012335); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); Range:  from: 916818    to: 918064    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g03687.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO69730.1); contains InterPro domain DTW (InterPro:IPR005636) Range:  from: 918299    to: 920507    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version