Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            --------->MYB52(1)                                                        <---------MYB52(2)                                                        --------->MYB46(3)                                                       ------>MYB46(1)                                                      --------->MYB52(1)                                                     --------->AtMYB61                                                 --------->ANAC58 ---------WOX13(1)                     <---------MYB46(3)------->GAMYB      ----------->GT1 ------TOE1(2)                  <---------MYB52(1)  --------->MYB46(3)     --------->LBD16 ------TOE2(2)              ------->TEIL         --------->ANAC58 --------->YAB1      <-----------GT1 ---ANAC46       --------->ALFIN1   <-----------RAV1(1)------>MYB83       --------->LBD16   agattgctccatagttgagatggggacatgaatcgttactgttgttgagacacgaccaacgaactgcatcgtaatcccgagtaaaatttaaccgataaga  909500                                                       ------>ZmHOX2a(2)                        <----------DOF2             --------->ATHB12          --------->DEAR3(1)                     --------->ARR11(3)      --------->MYB52(1)       --------->At5g28300                     <---------ARR11(3)     <-----------GT1          ----------->GT1             ----              <-----------ARR10       <---------HSFB2a(2)         --------->MYB52(1)    <---------AtMYB61              --------->GLK1(2)       --------->HSFB2a(2)         ------------>MYB.PH3(1)       <----             <---------GLK1(2)        --------->HSFC1(1)     <-----------GT1 <---------LBD16    -----   gtcttcggtcttagagaatctaacatctttcttctctcttcgagaattacccgatgatcggaattacaaaacggttaacaccggcgagaattggtgggat  909600            <----------DOF2           ------>ZmHOX2a(2)         <---------AGP1         --------->ARR11(3)                                                                    ------         --------->ARR14(2)                                                             <------------         <---------ARR14(2)                                                       <---------AHL20(2)         <---------ARR11(3)                      <-----------GT1                  --------->AHL20(2)        <---------CCA1(2)             <---------O2                               <---------AHL20(2)    <---------ANAC58             ----------->HVH21                               --------->AHL20(2)    <---------ANAC46      <----------DOF2  <------NtERF2                         --------->AHL20(1)    <---------ANAC58 <---------ZAT18  --------->ANAC46                           <---------AHL20(1)    <---------bZIP60(2)  <---------DAG2  <---------DEAR3(1)            <---------ANAC46---------->DOF2 ----->ARR11(3)     <---------ANAC58  --------->O2                     ----------->GT1<---------AHL20(2) -----GLK1(1)       <---------ZAT6    --------->bZIP60(2)         --------->At4g35610<---------AHL20(2) ---->GLK1(1)       <---------ANAC58<---------ALFIN1       <----------DOF2      --------->AHL20(2)   atcatgtcgtggatcttttctagtgtgccttttctctaacacgtcgtcgttttgcctcattctttaacagatgtcgtttaaaattaatttaaagtacaaa  909700                                    <---------ICU4                                   --------->ICU4                     <---------ANAC46                     <---------ANAC58         <---------ANAC46        --------->YAB1         <------MYB83<---------ANAC58         <------MYB46(1)  <---------AGP1        --------->MYB46(2)<---------ARR14(2)                --------->AHL20(2)        --------->MYB55(2)--------->ARR11(3)             ------>MYB83        --------->MYB111(2)  <----------DOF2             ------>MYB46(1)        <---------AtMYB61 <---------ARR11(3)           <---------MYB59        --------->MYB111(1) ------>ZmHOX2a(2)     --------->SPL7           ----------->GT1        <---------MYB46(3)--------->ARR14(2)     <-----------GT1           <---------ANAC46      <---------MYB52(1) <---------CCA1(2)     <---------ANAC58    --------->ZAT6                 --- ---->DOF2           <---------bZIP60(2)       <---------ANAC58  <-----------GT1          ---------->DOF2 ---AtSPL8        <-----------RAV1(1)       <----------DOF2 <---------AHL20(2) --------->AHL20(2) <--   agaatgcggtttggtggattatgtcgtggatcttttcataatgggcctttcttacgacctaattttttaacacgatgtcgtttaaatcgattaaaaggtt  909800                                                                    --------->At4g35610                                                                    <---------At4g35610                                                                   <xxxxxxxxxxxxxxxsmallRNA(le3)                                                                   <xxxxxxxxxxxxxxxxsmallRNA(le3)                                                                   <xxxxxxxxxxxxxxxsmallRNA(se3)                                          ------>ZmHOX2a(2)        <xxxxxxxxxxxxxxxsmallRNA(si3)                                        --------->ARR14(2)        <xxxxxxxxxxxxxxxxsmallRNA(s)                                        <---------GLK1(2)        <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                        --------->ARR11(3)       <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                        <---------ARR11(3)       <xxxxxxxxxxxxxxxxxsmallRNA(se3)                              ----------->HVH21                 <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                             <xxxxxxxxxxxxxxxsmallRNA(le3)      <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                             <xxxxxxxxxxxxxxxsmallRNA(si3)      <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                            --------->ANAC55(2)                 <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                            --------->ANAC58                    <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                            <---------ANAC55(2)                <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            --------->ANAC46                   <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                            <xxxxxxxxxxxxxxxxsmallRNA(le3)     --------->ZAT2                            <xxxxxxxxxxxxxxxxsmallRNA(i)       <---------ZAT2                            --------->ANAC58                   <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                           xxxxxxxxxxxxxxxx>smallRNA(fl3)      ----------->RAV1(2)                           xxxxxxxxxxxxxxxxx>smallRNA(se3)     <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                           xxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                           --------->TOE1(2)                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                           xxxxxxxxxxxxxxxxxx>smallRNA(se3)   --------->MYB52(1)                          xxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          <xxxxxxxxxxxxxxxxsmallRNA(fl3)      <xxxxxxxxxxxxxxxsmallRNA(fl3)                          xxxxxxxxxxxxxxxx>smallRNA(si3)      <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          <---------ALFIN1<xxxxxxxxxxxxxxxxsmallRNA(i)            *TSS                      ------>ZmHOX2a(2) <---------ARR14(2)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                    <---------ARR14(2)  --------->ARR14(3)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                   xxxxxxxxxxxxxxxx>smallRNA(i)              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                <xxxxxxxxxxxxxxxxsmallRNA(s)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                <xxxxxxxxxxxxxxxxxsmallRNA(fl3)             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               <---------ANAC46    <-----------HVH21        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               <---------ANAC58  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <---------LBD16    -------               <---------ANAC58 ------>NtERF2              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               <xxxxxxxxxxxxxxxxsmallRNA(s)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)             <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             <xxxxxxxxxxxxxxxxsmallRNA(s)<------ZmHOX2a(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <xxxxxxxxxxxxxxxxsmallRNA(s)<-----------ARR10 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <xxxxxxxxxxxxxxxsmallRNA(si3)<---------ARR14(3)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)           <xxxxxxxxxxxxxxxxsmallRNA(s) --------->AGP1    <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <--           <xxxxxxxxxxxxxxxxsmallRNA(i)<---------CCA1(2)  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  ----           --------->ALFIN1<xxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---- ------>HSFB2a(2)<xxxxxxxxxxxxxxxxsmallRNA(i)     ----------->HVH21<xxxxxxxxxxxxxxxsmallRNA(fl3) <--- -------HSFB2a(2)--------->ALFIN1<xxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(se3) <---   ttagaaaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttgggattatttgataaa  909900         --------->YAB1        <---------YAB1       <---------AHL20(2)                                               <---------YAB1       --------->AHL20(1)                                         --------->AtMYB61       --------->AHL20(2)                                        --------->MYB46(3)   --------->ARR11(3)      --------->YAB1                                          <---------ETT(2)        --------->GLK1(2) <-----------GT1                                              --------->ETT(2)        <---------ARR11(3) -->AHL20(2)                                              <---------AtMYB61          --------->RVE1(1) -------ICU4<---------ICU4                          <---------------AGL15        --------->AHL20(2) ----->AHL20(2)                                     --------------->AGL15     ----------->GT1 ----->AHL20(1)                                     ================================================= ------AHL20(1)                                    <-----------------AGL2    <---------TOE2(3)   <--- ------AHL20(2)                  --------->ZAT6    <-----------------AGL1--------->YAB1        ------   atattacattataatacttacaaaaacgtttcaaaacactatcaaatgccatttctcattttggtcgaccatcgatgataagattaaaaatcttctatta  910000                 ------>ZmHOX2a(1)       --------->ANAC46       --------->REM1(1)       --------->ZAT6                <---------ARR11(3) <---------ARR11(3)                  --------->ARR11(3) --------->ARR11(3)                 --------->RVE1(1) =============================================================MADS_MADS ------YAB1     <---------MYB59 --------->AHL20(2)                                   --------->ATHB12 --->YAB1 <---------ALFIN1   ----------->GT1  <---------------AGL15                 <---------YAB1  -   tgaaatcttacaccacttcctaacatgaaaacgattaaaaatctcattctatattgtgaagaagttgataagttgatggtcccaagatgatttcatcttg  910100                                                                                               ------                                                                                              <------                                                                                              -------                                                                       --------->ANAC58       -------                                                                    <---------REM1(2)         -------                                                                  --------->ZAT18             <------                                                                <---------------AtSPL8      ---------                                                         --------->WOX13(1)            --------->ANAC58                                          <---------REM1(1)   ------->TEIL       --------->ANAC58                             --------->ANAC55(2)       <---------ATHB12--------->ANAC46--------->ANAC46 --------->TOE2(3)--------->ANAC58       <---------TOE2(3) <---------ATHB12      --------->ANAC58 ---------->GT1   --------->ANAC58 --------->ARR11(3)  <---------YAB1  --------->ANAC58--------->ANAC58   catcgtaaaatatcaaaaactcgctagacatatgtaatatgttgatgtagagaagtaatcaatgaatgtgtacaaggcatatcaagcccaagccaagata  910200                                     <----------DOF2 --->CCA1(2)               <--------ATHB1 ---ARR14(2)              <---------ATHB12                                                   <------- -->ARR11(3)              --------->ICU4                              <-------TEIL           -------- -->ARR14(2)        --------->ARR14(2)                        --------->GLK1(2)          <-----------HVH21 -->ARR11(1)        <---------ARR14(2)                        <---------ARR11(3)--------->ANAC58 ---ARR11(3)   ------->GAMYB         ------>ZmHOX2a(1)        --------->ARR11(3)--------->ANAC58 -->ARR10   <-----------GT1--------->ATHB12               --------->YAB1    <---------HSFB2a(2)   tgggaatacatatataaccccaaatccaatgattcaatccttttgggctaaatagagtcatcaaaatctaggtacattctgtaagcatctctatcagccg  910300                                                               <---------ARR11(3)                                                        --------->ZAT14                                                        --------->LBD16                                                       --------->DEAR3(1)   <---------DDF1          <-----------GT1          --------->ANAC58   --------->ANAC46     <---------ETT(2)          --------->ZAT6           --------->ANAC58<-------TEIL--------->ARR11(3)      <----------DOF2          --------->ANAC58  --------->ARR14(2)        --------->ETT(2)     <---------ANAC58          --------->ANAC58  <---------GLK1(2)      <---------ANAC46     <---------ANAC58<---------ZAT14             <---------ARR14(2)<---------O2                     < --At4g35610         <---------ZAT18  <----------DOF2<---------At5g28300<---------PCF2       <------- ->At4g35610         --------->ZAT14  <---------DAG2<-----------GT1<---------ANAC46----------->GT1---   agtagtagcttttcactagacagtctacttggaacccaagctttttgtacagattcaccgcagaagttctcgtggggtcgacatgaagtgaaacccgttg  910400  Previous    Next  AGI:  At1g03640.1    Description:  pre-tRNA. tRNA-Phe (anticodon: GAA) Range:  from: 909810    to: 909882    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g03650.1    Description:  GCN5-related N-acetyltransferase (GNAT) family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO23952.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83475.1); contains InterPro domain Acyl-CoA N-acyltransferase (InterPro:IPR016181); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) Range:  from: 910022    to: 911192    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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