Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           --------->YAB1                                                                                         --------->TOE2(3)                                                                                       --------->ARR11(3)           <---------AHL20(2)      <------ZmHOX2a(2)                                   <---------ARR11(3)           --------->AHL20(2)      ==============================HOX2a_HOX2a           --------->GLK1(2)          --------->AHL20(2)      <---------ARR11(3)                                  --------->RVE1(1) ---------->DOF2           --------->YAB1                                             --------->CCA1(1) -------->YAB1            <---------YAB1                                            --------->AHL20(2) --------ATHB12   ---------->DOF2 --------->ARR11(3)      <------ZmHOX2a(1) --------->AHL20(2) ----->WOX13(1)--------->YAB1 --------->YAB1            <---------TOE2(3)   <---------AHL20(2)   ----   aatcaaagacgatttaattagaaagcttattatcaagatcaaagattgtatggtttttgaggatgacacatgaagaaattaaaaaaaaaaatcttaattt  898500                                                                    <-----------RAV1(1)                                                                  <XXXXXXXXXXXXXXXXXXXXMIR403                                                               ------->MYC3                           <---------ICU4                      ------->MYC2                          <---------YAB1                       <-------MYC2                        <---------ICU4                         <-------MYC3                        --------->YAB1                        <---------TGA1a                     <---------ICU4                           --------->O2                     --------->YAB1                           --------->TGA1a                    --------->ICU4                            <---------O2                  <---------ICU4   <-------MYC3               <---------ANAC58                  --------->YAB1   ------->MYC3               <---------ANAC55(1)             -------                 <---------YAB1   --------->O2                --------->ANAC55(2)             <------               --------->YAB1     <---------O2                <---------ANAC55(2)             -------       =====================================bZIP_DOF          <---------ANAC46               <-------       ---------->DOF2 --------->ICU4   ----------->HVH21     <---------ANAC58        ------>MYB46(1)  --------->GLK1(1) <---------YAB1--------->TGA1a             <---------bZIP60(2)     ------>MYB83 ------->GT1  <------ZmHOX2a(2)   <---------TGA1a         <-----------HVH21      <-----------GT1   --   tgtgaaatccaaagggatcatcataatcatcatcccatgtgtctgacagcaagagaagaatgtcacgtgtttgtgggtcaatttaaccaaatgctatatc  898600                                                               --------->ALFIN1                                                        <---------ICU4                                                       <---------YAB1 ----------->HVH21 -->ARR11(3)                             --------->ANAC46    <---------ANAC58 ---ARR11(3)       <---------ICU4        --------->ANAC58    <---------ANAC46          --------->TOE2(3) -->ARR14(2)   --------->YAB1            --------->ANAC58    <---------ANAC58          --------->YAB1 --CCA1(2)    <---------YAB1     ---------->DOF2     --------->YAB1 <----------DOF2 <---------CCA1(2) --------------->AGL2 <-----------GT1    --------->AtLEC2    <---------O2         <----------DOF2 <--   ttccaattgcagcattatcaaaaattactaaactaaaaaggccacgcacaatgactcatcatcgcgtgggctttgacatatgggccttatcttaatcggg  898700                                                      ------>ZmHOX2a(2)                                                    <---------AGP1                                           ----------->HVH21                                         <---------O2 ======================HOX2a_HOX2a                                         <---------TGA1a                                         --------->ZAT2                                         <---------bZIP60(2)                                         ----------->RAV1(2)                                      ------>ZmHOX2a(1)                                      ----------->HVH21                                      =======================HOX2a_HOX2a                                  --------->ARR14(2)--------->ARR11(3)                                  <---------ARR14(2)--------->ARR14(2)             ------>MYB46(1)     --------->GLK1(1)  <---------ARR14(2)                     --------->CCA1(2)             ------>MYB83    --------->ANAC58       <---------ARR11(3)             --------->GLK1(2)-        <-----------GT1      --------->ANAC46    --------->ALFIN1                 <---------GLK1(2)--      --------->AHL20(2)     --------->ANAC58   <---------At4g35610          --------->TOE2(3)    ---  <---------YAB1   --------->CCA1(2)----------->RAV1(2)              ------>ZmHOX2a(1)   --------->YAB1 --------DOF2--------->MYB52(1)  <---------GLK1(1) <---------CCA1(2)--------->TOE2(3)   <---------TOE2(3)   ctttacaattaaaccaaacagatataaaaacaagcaaatcctgacctggcagtggatcttcatgtgtcatcctcaaaaaccatagaatctaagataagaa  898800           <-----------HVH21         ------->MYC2         <-------MYC4         -------->ABF1         ------->MYC3         <-------MYC3         ------->MYC4         <-------MYC2        <--------ABF1        =========================MYC_MYB        --------->O2        --------->TGA1a        <---------O2                                     ------->GAMYB        <---------ANAC55(2)                             --------->ANAC58        --------->ANAC55(2)                           --------->MYB52(1)        <---------TGA1a                      --------->LBD16                                       --   ----------->HVH21     ------->GAMYB      --------->LBD16  ----------->RAV1(1)           <--------- -------->MYB52(1)      <---------ALFIN1   <---------LBD16--------->ANAC46                <---------DAG2 ------->CCA1(2)      ----------->RAV1(1)<-----------GT1--------->ANAC58   *TSS        <---------ALFIN1 ------>ARR11(3)  ------------------------>ANAC81 <-----------GT1      <----------DOF2 --------->REM1(1)   gataagggacacgtgtcaaaaatccaacacacagaaacacattttccccgatttactaacgcacaacaaaactctttcattctcttcttacaccttttct  898900                                                                        --------->MYB46(3)       ----                                                             <------NtERF2                       ----                                                             ------>NtERF2  --------->YAB1      -----                                                            --------->RAP2.6(2)                <-----                                                            --------->RAP2.3(2)             <--------                                                            --------->RRTF1(2)              ---------                                                            --------->DEAR3(1)             --------->ARR14(2)                                                            ----------->RAV1(1)    <---------ATERF1(1)                                                           --------->RAP2.3(1)    --------->DEAR3(1)                                                          --------->LBD16  <---------YAB1  ------->TEIL                                --------->At4g35610       ------>NtERF2------>MYB83------>NtERF2-----                            ----------->RAV1(1)          --------->ANAC46--------->AtMYB61 <---------ARR14(2)               <---------ANAC58 <---------ZAT2      <---------ATHB12   ------>MYB46(1)     <---------ARR11(1)       <<<<<<<<<<<<<<<<<LFY----------->HVH21       <---------ARR14(2) --------->ORA47(1)   <---------  <---------GLK1(1) <---------At4g35610        --------->ANAC58     --------->MYB46(3)    <---------ARR14(1)  --------->GLK1(1) --------->At4g35610   --------->HSFB2a(2)--------->LBD16<---------ICU4<---------CCA1(2) ------->LBD16 <---------ANAC58 <---------At4g35610--------->ARR14(2)--------->DEAR3(1)  --------->LBD16 -DOF2<---------ETT(1)    --------->At4g35610  --------->ANAC58     --------->DEAR3(2)------>ZmHOX2a(1)   ccagagttccgacaatggcttcagcatcagcgacagctactcttctcaaacccaatcttccgccgcataaaccgaccatcatcgcctcctccgtatctcc  899000                                   --------->LBD16                                   ------>NtERF2                                  --------->RAP2.6(2)                                  --------->DEAR3(1)                      --------->AtMYB61                      ------->GAMYB<------NtERF2                      <---------ALFIN1                     <---------MYB111(2)                         --------->ANAC58                     <---------MYB55(2)                          --------->ANAC58                     --------->MYB46(3)                <------NtERF2                    -------->P  --------->LBD16       <---------RAP2.3(1)                    --------->ANAC58                  --------->RAP2.6(2)                           -                    --------->ANAC58                  ------>NtERF2                                 -             <---------O2       ------>NtERF2         <---------ATERF1(1)                           -             --------->O2--------->AtMYB61           <---------DEAR3(1)                             -             --------->ANAC46  --------->ANAC46      <---------ATERF1(2)                            -      ------>ZmHOX2a(1)  <---------ALFIN1            --------->ATERF1(2)                           -- -->NtERF2   =================MYC_MYB  <---------GLK1(1)         --------->ANAC46                  <- ----->LBD16 ================MYC_MYB   --------->GLK1(1) ----------->RAV1(1)                       <- ---->ANAC46 --------->TGA1a   <---------ALFIN1      <---------ANAC46                              -- ----LBD16   <---------TGA1a ------>ZmHOX2a(1)  =====================RAV                          --- -GLK1(1)    --------->bZIP60(2)<---------ATERF1(1) --------->RAP2.6(3)                           <-- >GLK1(1)  <---------ALFIN1  <---------ATERF1(1)----------->RAV1(2)                              <--- ---->DEAR3(1)<-----------HVH21--------->DEAR3(1)  <---------ATERF1(1)    --------->ZAT6      <------ --ARR10 ------>ZmHOX2a(1)  <---------ALFIN1------>ZmHOX2a(1)  <---------ALFIN1               -------   gcctcttcctcctccacgtcgcaaccacctcctccgccgcgatttcctctccctggcggcaacatccacgcttctaacacaatcgattcagtttctagct  899100               --------->At4g35610               <---------At4g35610             --------->RAP2.3(1)            --------->LBD16           --------->ANAC46           --------->DEAR3(1)          --------->ATERF1(1)      <-----------HVH21     <---------DEAR3(2)    --------->DEAR3(1)   --------->ATERF1(1)   <------NtERF2   --------->DEAR4(2)  ------>NtERF2------>NtERF2  <---------ATERF1(1)  <---------RAP2.3(1)  <---------ERF1  <---------RRTF1(1)  <---------RAP2.6(1) <---------DEAR3(1) --------->DEAR3(1)                                                      --------->ANAC58 -------->RAP2.6(1)                             <------NtERF2            --------->ANAC58 -------->RRTF1(1)                             <---------DEAR3(2)       <---------ZAT14 -------->ATERF1(1)                            ------>NtERF2            <---------ZAT18         ----- -------->RAP2.3(1)                           <---------DEAR3(1)        --------->ZAT18        <----- -------->ERF1--------->RAP2.3(2)            --------->RAP2.6(3)      <---------SPL7           ------ ---->NtERF2<---------ATERF1(1)            <---------O2             <---------------AtSPL8    ------- --------RAP2.3(1)                        <-------TEIL              ================================= --------ATERF1(1)                       --------->CCA1(2)          ================================= ------->LBD16--------->DEAR3(1)         --------->ARR14(1)         <---------------AtSPL3    <------ ------>DEAR3(1)                        --------->ARR14(2)          <------ZmHOX2a(1)         ------- -------DEAR3(1)                        <---------ARR14(2)   --------->DAG2           --------->At4g35610 ------LBD16------>NtERF2               --------->ARR11(1)  --------->ZAT14           <---------At4g35610 ---ZAT2  <---------LBD16           ---------->DOF2         <---------ZAT14       --------->AtLEC2 -->ZAT2 <---------ATERF1(1)----------->GT1--------->O2     ---------->DOF2 <----------DOF2 ---------   ccggcgccggtctccgccgctgaagatgaagagtatatcaaagatacgtcggcagtgatcagtaaagtaaggagtacgctttcgatgcagaagacagatc  899200                      --------->ZAT2                      <---------At4g35610                      <---------ZAT2                     <---------ARR14(2)                     --------->ARR14(2)                    --------->ATERF1(1)                   --------->LBD16                  <---------DEAR3(1)                  <---------ANAC58                  <---------ANAC58                  <---------ANAC46                 --------->ATERF1(1)                 <------NtERF2                 <---------LBD16        <---------At4g35610       ----------->HVH21                                      ---------->DOF2      <---------ANAC46--------->At4g35610                  <---------HSFB2a(2)     <---------At4g35610                                   --------------->AGL15 <-----------RAV1(1)<------NtERF2                          --------->HSFB2a(2) ->ZmHOX2a(2)   <---------MYB46(3)                        <---------LBD16                       ----- -ZmHOX2a(2)    ------>NtERF2                             ----------------->AGL2               <----- --->CCA1(2)   <---------DEAR3(1)               <--------P----------------->AGL1               ------ -->ARR14(2)   --------->ALFIN1                <-------GAMYB--------->LBD16   <---------LBD16  <----- =HOX2a_HOX2a  <---------AtMYB61               <---------ANAC58               --------->HSFB2a(2) ==HOX2a_HOX2a ----------->HVH21<---------HSFB2a(1)      --------->MYB52(1)   <---------HSFB2a(2) ---ARR14(2)  --------->ATERF1(1)              <---------ANAC58     ---------->DOF2---------->DOF2 -->AGP1--------->At4g35610     --------->HSFC1(2)    --------->ANAC58  --------->ARR11(3)    <------ -->ARR10   <---------DEAR3(1)  <---------HSFC1(2)    --------->ANAC58  <---------ARR11(3) <---------   cgaatgtggctgatgcggtggcggagctgagagaagcgtcgaattcttgggttgccaagtaccggaaagagaaagctcttctcggaaaagcttctttccg  899300                                                                  ------>NtERF2                                                                  --------->LBD16                                                                 <---------LBD16                                                              --------->ARR14(2)                                                              <---------ARR14(2)                                                          <------NtERF2                                                         ------>NtERF2                                                        --------->ARR14(2)                                                        <---------ARR14(2)                                                      <---------RAP2.3(1)                                                      <---------ATERF1(1)                                                      ------>NtERF2            <-------GAMYB                             <---------DEAR3(2) ---->LBD16<---------DEAR3(1)                        <---------DEAR3(1) ----HSFB2a(2)                      <---------ANAC55(2)--------->ATERF1(1)           --------->ARR14(2) --->HSFB2a(2)                   --------->ICU4    <---------ATERF1(1)               <---------GLK1(2) ----LBD16 <---------ANAC46 <---------At4g35610   ----------->HVH21        <------ZmHOX2a(1)    ----- ---LBD16 <------NtERF2 <-----------HVH21        --------->SPL7 <---------LBD16      <---------ARR14(2) -DOF2  <---------DEAR3(1)<-----------RAV1(2)<---------AtMYB61--------->GLK1(2)     <------ZmHOX2a(1)   ggatatatactcggcgttgaatgctgtttcaggtcattatgtgagttttggtccgacggctccgattccggcgaagaggaaggcgaggattcttgaagag  899400  Previous    Next  AGI:  At1g03600.1    Description:  photosystem II family protein. similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96761.1) Range:  from: 898875    to: 899654    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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