Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  --------->ANAC46                                                                                --------->ANAC58                                                                                --------->ANAC58                                                                          ------>MYB83                                                                          ------>MYB46(1)     --------->ANAC58                                                   ------->GAMYB     --------->ANAC58                                                ------>MYB83  --------->ZAT18         --------->TGA2(1)                          ------>MYB46(1)  <---------ZAT18         <---------TGA2(1)                          --------->MYB52(1) ---------At4g35610       --------->bZIP60(1)                       ----------->HVH21 -------->ZAT2            <---------bZIP60(1)                      <---------MYB46(2) -------->At4g35610    ----------->HVH21              ------->GAMYB<---------MYB59   ------>MYB46(1) ---------ZAT2  ------>ZmHOX2a(1)          <----------DOF2         --------->AtMYB61 ------>MYB83 --- --->GAMYB     --------->TOE2(3)---------->DOF2      --------->MYB46(3) <---------MYB59    --------->LBD16   cgagctcactccaacttcctcagacatgacatcacaaagcacaggctttacttcaaccatcgactcagacctaaccgaactcacaccaacttccccagac  883000            --------->ARR11(3)            <---------ARR11(3)        ---------->DOF2      <---------YAB1     --------->TOE2(3)    --------->ATHB12                                                                        ---------    <--------HAHB4                                      <---------GLK1(2)                   <--------    <---------ICU4                                    <---------YAB1                --------->At5g28300   <---------YAB1                             --------->ZAT6                       ----------->GT1   --------->ICU4                           <-----------GT1  <---------LBD16      --------->ZAT6 ------>bZIP60(2)    <----------DOF2        --------->MYB52(1) --------->LBD16  --------->MYB52(1)   atgtcatcattaaagacctcaagctttccctcaatcgactcagaattaacagtagtctgattctccggacacattacatcgctaacagtaacaacatctt  883100                                        <---------ARR14(2)                                        <---------ARR11(1)                                        <---------ARR11(3)                                        <-----------ARR10                      ---------->DOF2   ------->TEIL   --------->ARR14(2)                   --------->ANAC58     --------->ARR14(2)              --------->ALFIN1         <---------ARR14(1)           <---------YAB1        --------------->AGL15          <---------CCA1(2)   ------>ZmHOX2a(1)        <---------------AGL15        <---------ANAC58  <---------ARR14(2)     --------->ARR14(2)              --------->ANAC55(2)  --------->TOE2(3) <---------TOE2(3) --------->ANAC58  <---------ANAC55(2)  --------->TOE1(3)                         - >ARR11(3)   ------->MYC3            <---------ANAC58  --------->ARR11(3)                           < -ARR11(3)   <-------MYC3      ---------->DOF2       ----------->ARR10                             <-   cttgaggtatctccatgtggtactcaaagaaatcaaagtccgtatcttctatgctaaaatcctcaacgttccgattactctcagaccaagtgatagaatc  883200        --------->ANAC58        --------->ANAC58      ---------->DOF2    --------->LBD16   <---------HSFB2a(2)                  ===================================HOX2a_HOX2a  <---------LBD16              ---------->DOF2                                           <---------At4g35610 -------->ARR14(2)           --------->YAB1        <-----------GT1             --------->AtLEC2 ---------ARR14(2)        --------->GLK1(1)---------->DOF2          ------>ZmHOX2a(2)  <--------P --------GLK1(1)      ----------->GT1   ------>ZmHOX2a(1)        --------->ATHB12   <---------TOE2(3)   gaaatccggaaaggaatcgatggaagggaaatcaaaagagtccttgaaagtttttaccttggggtcttgatcggctacgacttgcaaaggtagctcttct  883300                        <---------GLK1(1)                        --------->GLK1(1)                     <<<<<<<<<<E2Fb                    --------->LBD16                   <---------ANAC46                   <---------LBD16                  <---------LBD16                              --------->TOE1(2)             --------->ATHB12  --------->MYB46(3)             --------->MYB46(3)              -------           <---------WOX13(1)  <---------ATHB12             <---------ARR14(2)---------->DOF2 -------          <---------ANAC58    ------>MYB83                  ------------------------>ANAC81   <------          <---------ANAC58    -------->P                 >>>>>>>>>TBF1   --------->DAG2    *TSS          <---------AtLEC2    ------>MYB46(1)    --------->ZAT18        ---------->DOF2   <----------DOF2   tcaacggtttttgcttgattagcgggaaatccaaccatggcaagaagagagagcgcgaagaagaaccagcgaagaaaagtgaaagaacatgactttcgag  883400          <---------At4g35610          --------->At4g35610          <------NtERF2         <---------RAP2.3(1)         <<<<<<<<<AtERF-3         <<<<<<<<<AtERF-5         <<<<<<<<<AtERF-4         <<<<<<<<<AtERF-1         <<<<<<<<<AtERF-2         <---------ERF1         ------>NtERF2        <---------RAP2.6(2)        <---------ANAC46                                               <---------TOE1(3)        <---------RAP2.3(2)                                            <---------TOE2(3)        <---------RAP2.3(3)                                         <---------MYB52(1)        <---------DEAR3(1)                                        --------->ANAC55(2)        <---------ATERF1(2)                                       <---------ANAC55(2)        --------->ATERF1(2)  <------NtERF2     <------NtERF2     <-------TEIL                     <--       --------->RAP2.6(3)   <---------ZAT2   ------>NtERF2     --------->ARR14(1)               <---     --------->ALFIN1        <---------At4g35610                --------->CCA1(2)                <--- ---------->DOF2             --------->At4g35610               --------->ARR14(2)           <-------- -->HSFC1(1)          ---------->DOF2     --------->DAG2       <---------ARR14(2)           <-------- -->HSFB2a(2)        <---------AHL20(2)  ---------->DOF2       --------->ARR11(1)        <---------ZAT14 ---HSFB2a(2)      <-----------TBP      ---------->DOF2      <---------TOE1(2)    --------->At4g35610   aattaaagtggcggctaagttatataaaggcagctattttagcaaaggcgcgagggtttatcgcagatacgttagggttttaagagcagagagtacttgg  883500                                                  <---------At4g35610                             ---            --------->ALFIN1                      <---------CCA1(2)                            <-----  ---------->ID1  <---------ALFIN1             <-------TEIL                            <---------AHL20(2) --------DOF2    <------NtERF2                <---------MYB52(1)                       --------->AHL20(2) ------ANAC58   ------>NtERF2              --------------->AtSPL3   <----------DOF2   <---------AHL20(2) ------ANAC58<---------MYB46(3)          <-----------GT1      ----------->RAV1(2)<----------DOF2 ---- -ANAC58    <---------AtMYB61      <---------TOE2(3)        <---------ALFIN1<----------DOF2--------->AHL20(2) -ANAC58    <---------DEAR3(1)     <---------TOE1(3)     --------->ANAC46<-----------GT1   <---------AHL20(2)   ctttggctctcttggtggtgccacttccctctcaattagggtttagccgttcatctctccctccacctgtctttttttcttttctttatttattttttta  883600                     ------>ZmHOX2a(1)                    --------->TOE2(3)----------->GT1                                                <                   <---------ICU4--------->WOX13(1)                                                <-         <---------AHL20(2) <---------AHL20(2)                                                     --        <---------AHL20(2)  --------->AHL20(2)                        --------->GLK1(2)           <--        --------->AHL20(2) --------->ICU4                             --------->ARR11(3)  -----------    <---------AHL20(2)   --------->YAB1                       <---------DAG2             ------------    --------->AHL20(2)  <---------YAB1  --------->YAB1<---------ARR11(3)                 ------------ ------>YAB1  --------->AHL20(2)--------->AHL20(2)    --------->ARR11(3)               <-----------GT1 ------GT1    <---------AHL20(2)<---------AHL20(2)---------->DOF2     <---------ARR11(3) ------------ ------>ID1  --------->YAB1<---------YAB1  --------->AHL20(2) <----------DOF2 <---------ICU4   <-----   tcgtatttattttaattttaatccttataattaataaatcagttataaaatataaagatgtctactttacaaaatctacataattagatttaccaatttg  883700                                                                             --------->At4g35610                                                                       <---------ATERF1(1)     ------------>CBF                  ------->TEIL                    ------>NtERF2 ---------AHL20(2)              <---------MYB52(2)                  <---------ANAC58 --------AHL20(2)              --------->ANAC46                     <---------ANAC58 ------->AHL20(2)              --------->ANAC55(2)                 <-----------RAV1(1) -------WOX13(1)           --------->YAB1                      <------------CBF ---->AGL15                <---------AHL20(2)                 <---------MYB46(3) >CBF<---------YAB1      <-----------TBP         <------------CBF  --------->ALFIN1 ----->AG            <---------DAG2  ------->GAMYB          <---------MYB52(1)    ------->TEIL ------ ----->AGL1          <----------DOF2<---------MYB52(2)     --------->LBD16------>NtERF2       ------>ZmHOX2a(1) ----YAB1       <---------MYB52(1)--------->MYB52(1)     <---------LBD16--------->ATERF1(1) ---------   attaattttcaatgttccattagctttatttataagtaacgaacttggaagaattgttcaccggtgattgtggtgcctccgatgaatctcatcatcctga  883800                                                     --------->At4g35610                                                     <---------At4g35610                                           <---------ARR11(3)                                      <------NtERF2  --------->ZAT2                 <----------DOF2                                      <---------MYB52(1)                      ------>ZmHOX2a(1)                                     ------>NtERF2   <---------ZAT2       --------->ARR14(2)                                     <---------RAP2.6(3)                  <---------ARR14(2)                      <----------DOF2<-----------HVH21      --------->ANAC46 <---------LBD16                --------->ANAC58    --------->RAP2.6(2)     --------->ANAC58------>ZmHOX2a(2)       <                --------->ANAC58    --------->DEAR3(1)      --------->ANAC58----------->RAV1(2)     -                --------->ANAC55(1) --------->RAP2.3(3)   ------>NtERF2 --------->LBD16             <                --------->ANAC46    --------->RAP2.3(2)  --------->DEAR3(1)<------ZmHOX2a(2)        -              <---------ALFIN1     --------->RAP2.3(1)   ----------->HVH21<---------GLK1(2)       <--             <---------REM1(2)   --------->ANAC46 ------>ZmHOX2a(1)    --------->LBD16            <--           <---------WRKY38(1)   --------->ANAC58 <---------At4g35610 <---------LBD16 ----------->GT1 ---->DOF2--------->WRKY18(1)    --------->ANAC58 ================================HOX2a_HOX2a   <---- -->RAV1(2)<---------WRKY12   ----------->HVH21   =================================HOX2a_HOX2a-------   agcgccatttcagtcaacacgcctctttatgtctcacgccgtcaatttcttcctctgctccgacgaaacaatcccggatcctggagctttgtaaattggg  883900  Previous    Next  AGI:  At1g03530.1    Description:  ATNAF1/NAF1. similar to hypothetical protein [Vitis vinifera] (GB:CAN75706.1); contains InterPro domain NAF1 (InterPro:IPR008696) Range:  from: 880497    to: 883391    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g03540.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G18750.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24115.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75707.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 883782    to: 885611    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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