Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             ---------->DOF2                   ------------------------>ANAC81      <---------TOE2(3)                  <----------ID1                       ---------->DOF2                ------------------------>ANAC81       <---------AHL20(2)               ---------->DOF2                        --------->AHL20(2)            --------->AHL20(2)                    <---------------AGL15            --------->YAB1                        --------------->AGL15       --------->LBD16                      <---------HSFC1(2)      --------->ANAC58                      <---------HSFB2a(1)      --------->ANAC58                      --------->HSFB2a(1)                                 -----      --------->ANAC46                      --------->HSFC1(2)                    <---------AHL20(2)     <---------LBD16                       --------->ARR14(2)       --------->MYB52(1)       -------- --------GLK1(1)<---------------AtSPL8     <---------ARR14(2)----------->GT1      --------->AHL20(2)   gaaatcacgcgcaataaaaaagaacaaaaaaaaaaaaaaacaggggaacttccaaattaaagaaagaaaaaaacagagttcaaattaaacgaatgaaacg  863700                                                                  ----------->GT1                                                            --------->ANAC46                       --                                                           <---------HSFB2a(2)                     --       <---------TOE2(3)                                   ------>ZmHOX2a(1)                      ---       <---------TOE1(3)          ------->TEIL             --------->HSFB2a(2)                    <-- ------>GT1       --------->ARR14(2)                   --------->ARR14(2)                     ------- ->MYB52(1)       --------->GLK1(2) ----------->GT1    <---------ARR14(2)               <----------ID1   gagaaaattagggttttcagaatccaaaatcagacgaatcgaaaaaccatctacaagtatcctcgaaacagagaaaaacttctaagaaaaaaaacaaaaa  863800                                              <---------AHL20(2)               --------->MYB52(2)             --------->AHL20(2)         --------->MYB52(1)                  --------->AHL20(2)    ---------->DOF2                         <---------YAB1 ------->CCA1(2)                         <---------YAB1                                --------->YAB1 ------->GLK1(1)                         <---------AHL20(2)                           --------->ICU4 ------>ARR11(3)                      --------->AHL20(2)      <------ZmHOX2a(1)      <---------TOE2(3) -------ARR11(3)<----------DOF2       <---------AHL20(2)   --------->HSFB2a(2)      --------->YAB1  < --->DOF2<-----------GT1         <------ZmHOX2a(1)         <---------HSFB2a(2)   <----------DOF2  ---   gatatcaaaagtaacgttctttgggagaaaacagaggaatttttttattaaaaaaaaacctcgaggagctcgtgttgtcttctctttaatgatgttgact  863900                                              <---------MYB52(1)                                             <-----------HVH21                 --------->HSFB2a(2)        --------->ANAC46             --------->ARR14(2)         <---------GLK1(1)             <---------ARR14(2)        --------->ARR14(2)             <---------GLK1(1)    --------->ZAT2  ------->MYC3             --------->GLK1(1)    --------->At4g35610                       --------->At4g35610   <---------TOE2(3)            <------ZmHOX2a(1) <-------MYC3  <-----------HVH21  >>>>>>>>>WRKY18<---------HSFB2a(2)   ------->TEIL        <---------ARR14(2) ---------WOX13(1)--------->ANAC46<---------At4g35610      --------->ARR14(2)   <---------ALFIN1 ------>ATHB12   <---------HSFC1(1)   <---------GLK1(2)<---------LBD16  --------->MYB52(1)   tcattgacgatggagaattctcgaaacaatgtgaggagctgaatctccgtcatgtgcttcggaacttgtccgacgaacagcttcaccctctcttcgttct  864000                      <----------DOF2                   <-----------GT1                <---------ICU4                --------->ATHB51               --------->ICU4               <---------MYB52(1)           ------>NtERF2           --------->LBD16          --------->ANAC58                                <<<<<<<<<TBF1          --------->ANAC46                             <<<<<<<<<TBF1          --------->DEAR3(1)                     <<<<<<<<<TBF1           <---------REM1(2)          <          --------->ANAC58                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             <---         <---------LBD16                      <<<<<<<<<TBF1  <<<<<<<<<TBF1     <----------DOF2   ----        <---------ATERF1(1)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        ------>ZmHOX2a(1)        ------>ZmHOX2a(1)            ---------->ID1 <<<<<<<<<TBF1        --------->ZAT14 --------->LBD16   ccatcgtctcctccgccattatttctttctctcgacttcgtcgtcttcttcttcttcttcttcttcttctctctctacaggctttttcttcctgaatatt  864100                                       ----------->GT1                                      --------->YAB1                                   --------->YAB1            --------------->AGL15  <---------ICU4            <----------DOF2       <---------YAB1            <---------------AGL15 --------->ICU4        <----------DOF2         <---------ICU4                                    ----------->GT1     <---------AHL20(2)         --------->YAB1                                    <---------MYB46(3)     <-----------GT1           <---------YAB1                                ---------->DOF2 <---------AHL20(2)            --------->ICU4                            ----------->HVH21       <--- --------->AHL20(2)        --------->AHL20(2)                          <---------ANAC58          ---- ---------AHL20(2)         --------->AHL20(1)                          <---------ANAC58    <---------AHL20(2) ------AHL20(2)           --------->YAB1                               ----------->GT1     --------->AHL20(2) ----->AHL20(2)          *TSS--------->YAB1   --------->AHL20(2)   --------->MYB52(1)     --------->AHL20(2)   tatttatttactttcttttttttggaaaaaataataataataagaaaaaaaaatgagagaactactaactaatgggtgacaaagtggttaaattaaaata  864200                      <---------YAB1                           <---------AHL20(2)                    <---------ICU4                          --------->WOX13(1)                   <---------MYB52(1)                <---------At4g35610     --------->ARR14(2)             --------->ARR11(3) <---------MYB46(3)     <---------ARR14(2)<-----------GT1         --------->AHL20(2)          <---------ANAC58 ------ANAC55(2)   --------->ICU4<---------TOE2(3)   --------->At4g35610   <---------ANAC58        <- ----->ANAC55(2)---------->ID1  <-----------GT1---------->DOF2 --------->AHL20(2)          <---------   cggactaaatctgggctcgtcgttattactaaatttacgatattgccattaaaacagctgttcaattaaacaagaaggcgagcctgtgggatgccagggg  864300                                   <-----------HVH21                                          <------                                  --------->bZIP60(1)                                ----------->GT1                                  <---------bZIP60(1)        --------->LBD16       --------->ALFIN1                               --------->ALFIN1            <---------LBD16       <---------ANAC46    <---------LBD16         ------->TEIL                 <-----------GT1<---------AHL20(2)    -------  <----------DOF2        <---------TOE2(3)       <---------At5g28300    --------->AHL20(2)    ------- --------ALFIN1          <---------YAB1         <-----------GT1<----------DOF2   <---------ANAC58 --RAV1(2)            <---------YAB1   --------->AtLEC2<---------AHL20(2)        <---------ANAC58   aacactttcggattgttttgtctgattatggatgtgttgtcatgccgaatttaccattttatccgcgtttttgttttaatatggagtgtgtgaataagct  864400                                <-----------HVH21                        <---------AHL20(2)                       <---------AHL20(2)    <---------AHL20(2) --------->AHL20(2) ---At4g35610     <---------AHL20(2) -->ZAT2          --------->AHL20(2)            --------->At4g35610          <---------YAB1        <- -->At4g35610 <---------YAB1 --------->At4g35610<---------At4g35610    --------->MYB52(2)          <-   gactattttttttgttatgtttaaattaaatagctgtcatttcttcagtcttctgcattaaaactcaaaatgttagtttatgtttagtttttttttggat  864500           <------MYB46(1)           <------MYB83                                    <---------TOE1(3)           ----------->GT1                            --------->MYB52(2)          <---------AtMYB61                           <---------MYB46(3)        <---------MYB52(1)                     <---------GLK1(1)                      <---------AHL20(2)      <---------ANAC58        <---------ARR14(2)    <---------MYB52(1)  <----------DOF2      <---------ANAC58--------->DAG2           --------->GLK1(1)       --------->TOE2(3)     <------- --------YAB1   ---------->DOF2         <-----------RAV1(1)<---------TOE2(3)       <---------AHL20(1) --------AHL20(2)    ---------->DOF2   <---------TOE2(3)  ---------->DOF2          --------->AHL20(1)   ttttattgtcgtttggtttaaagaaaagtgagtattttgtttatgttggatatcgtttgttaaagttagtctacctttattctaatatttttttttatca  864600  Previous    Next  AGI:  At1g03457.1    Description:  RNA-binding protein, putative. similar to RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT4G03110.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22427.1); contains InterPro domain Ribonucleoprotein, BRUNO-like (InterPro:IPR015903); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Paraneoplastic encephalomyelitis antigen; (InterPro:IPR002343) Range:  from: 860788    to: 864125    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version