Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    --------->At4g35610                                          <-----                                  <---------At4g35610                                          ------                  <-------GAMYB   <---------ZAT2                                              <------                 <-----------RAV1(1)                                                xxxxxxxxxxxxxxxxx                 <---------MYB46(3)                                                 ------>ZmHOX2a(2)                 --------->MYB52(2)                         <------ZmHOX2a(1)     <---------ARR11(3)             <------MYB83  --------->SPL7                   ===============================HOX2a_HOX2a             <------MYB46(1)      --------->ZAT2          xxxxxxxxxxxxxxxx>smallRNA(s)        -------            --------->MYB59<-------TEIL                 <------NtERF2             --------->ARR11(3)<          <<<<<<<<<MYB98 --------->ARR14(2)           <---------RAP2.3(2)        --------->YAB1------          <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <---------RAP2.6(2)       xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <---------MYB52(1)<---------RAP2.6(2)   --------->CCA1(2)             <---------ATHB12<----         <-------GAMYB   <-----------HVH21        <---------GLK1(1)          xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxxx>smallRNA(s) --------->ATHB12<---------LBD16       ------>NtERF2     <-------     <-----------GT1     <---------ARR14(2)      --------->ARR14(2)<---------ARR14(2)       --------- --ARR14(2)<---------MYB55(1) ------>NtERF2      <---------ARR14(2)--------->ARR14(2)     <---------LBD16   tgggttttttccgttaggtttgttgcaggtccggccagctcattggtaagagatttgcggcaggactcgtatacttcggccaatgatctcgttccggtgg  847500      ---------->DOF2                                --------->ATERF1(1) ----MYB46(3)                                       <---------ATERF1(1) --->MYB52(2)                                       ------>NtERF2                                 --- ---AtMYB61                                ------>ZmHOX2a(2)                                      --- xxx>smallRNA(si3)                       --------->ARR11(3)                                       --- -->ALFIN1                --------->ANAC46<------ZmHOX2a(2)                                      <--- -----------RAV1(1)  <xxxxxxxxxxxxxxxxsmallRNA(i)<---------At4g35610       <---------ALFIN1      <--- --->MYB55(2)     <---------ANAC46       <---------AGP1        <---------At4g35610       <----------DOF2 ---GAMYB       <---------PCF2           <---------ARR11(3)   <---------ALFIN1--------->AtMYB61 ----- --MYB52(1)   <---------ZAT18            --------->AGP1------>NtERF2    <---------ARR14(2)      <---- >LBD16      --------->ALFIN1 <---------DEAR3(2) --------->At4g35610    --------->ARR14(2)    <------   ttgtgttgcaaagtagtgggccttgtatacgacggtactaatagatctatttgctgcctccgttccactgcccaaatccacctctggttctctttttccg  847600          <-----------GT1                             xxxxxxxxxxxxxxxx>smallRNA(s)     <---------ARR14(2)                   <---------LBD16     --------->ARR14(2)                   <---------ANAC58     <---------GLK1(2)                    <---------ANAC58                                        <--   --------->LBD16                       <---------LBD16                                          --- <---------LBD16                    <---------YAB1   xxxxxxxxxxxxxxxx>smallRNA(s)                <--- ------>WRKY38(1)                 ----------->GT1   ----------------->AGL1                       ---- ------>WRKY12                    --------->YAB1  xxxxxxxxxxxxxxxx>smallRNA(s)                   <--- -------->HVH21                xxxxxxxxxxxxxxxx>smallRNA(s)                                      <--- ------MYB52(1)              xxxxxxxxxxxxxxxx>smallRNA(s)                                        ---- --------HVH21              xxxxxxxxxxxxxxxx>smallRNA(s)                                         ---- ---->LBD16  ------>ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <----------DOF2           ----- -----At4g35610        <------------AtMYB77  ------>NtERF2         ------->TEIL   *TSS          <---- ---LBD16<-----------GT1   <---------ETT(2)--------->LBD16    <xxxxxxxxxxxxxxxxsmallRNA(s)  ---------   gtgaccggatttttcctgttttgtaactgtggacgattgtaattccgggcctaagcccaattgggactggacctttttttttaaaaaaaaaaaaaaaaga  847700                                                                                   ------->TEIL                                                                                <---------ANAC58      --------->MYB52(2)                                                        <---------ANAC58      <---------MYB46(3)                                                        --------->ANAC55(2) -------ARR11(3)                                        --------->ANAC58        <---------ANAC55(2) ------>ARR11(3)                                  --------->CCA1(2)            --------------->AtSPL8 ------GLK1(1)                                    --------->GLK1(1)            --------------->AtSPL3 ----->GLK1(1)                                   <---------GLK1(2)            <-----------GT1 ------CCA1(1)                                   <---------ARR14(2)       --------->AHL20(2) ------RVE1(1)         --------->ANAC58          --------->ARR14(2)   <---------AHL20(2) ----->RVE1(1)         --------->ANAC58        ----------->ARR10      --------->AHL20(2)          --- ----->CCA1(1)     --------->ANAC58       <---------AHL20(2)          --------->AHL20(1)  --------->AHL20(2) ---->ARR11(3)     --------->ANAC58      --------->AHL20(2)           <---------AHL20(1)  <---------AHL20(2) -----ARR11(3) --------->ANAC58         ----------->TBP --------->ANAC46 <---------YAB1  <---------WOX13(1) ->DOF2        --------->ANAC58   <---------CCA1(2)     --------->ANAC58 <---------AHL20(2)      ----   tatctcgtttgtggagaacgcatgctagcaacttccctatctataaaatcagatttgcaccccacaaactaaaatattatttacgtacttgattaattcc  847800                                                               <-------MYC3                                                               ------->MYC3                                                               ------->MYC2                                                               <-------MYC2                                                              <---------ANAC46                                                          ------->GAMYB                                                         --------->ANAC46                                                         --------->ANAC58                                                        --------->At4g35610                                                       <---------DOF5.7(2)                                                       --------->MYB52(1)                                                      <---------WRKY38(1)                                                      <---------WRKY12--------->AHL20(2)                                                      <---------WRKY45<---------AHL20(2)                         --------->ANAC46            --------->WRKY18(1)*TSS <-----------GT1                        ------->GAMYB               <-----------HVH21 --------->AHL20(1)            < --------->CBF       <-----------GT1               --------->WOX13(1) <---------AHL20(1)          <-- -->ZmHOX2a(1)    --------->YAB1       <---------AHL20(2)--------->ANAC58 --------->YAB1      <------ZmHOX2a(2)   tacaatatagtcatttacaaaaataaccctccatttgatatttaagtcaaaatcagtcaacggaacgtggaataaattataactttcgacgctccgatca  847900         --------->At4g35610       <---------ICU4    --------->YAB1                                                                                 <-    <---------ICU4                                                                                 -- --------->YAB1                                                               <----------DOF2<------- -------TEIL        <-----------HVH21           <---------MYB52(1)     --------------------->WRI1  <- -------GLK1(2)    <-----------RAV1(1)    <---------GLK1(2)            <----------DOF2    <---------MYB46(3)   gattcatcatcatctctctctgtgtcgctccgattttgaatttggaatctcttagttaagttggaagtttgttctttggtcttttcgcctagttgttgtt  848000                                                  XXXXXXXXXXXXXXXXXXXX>MIR2111B*                                                --------->DEAR3(1)                                               <---------HSFC1(2)                                               --------->HSFC1(2)         <---------MYB52(1)              --------->ANAC58                 <---------HSFB2a(1)   --------->ARR14(2)        <---------AHL20(2)                     --------->DEAR3(2)    <---------ARR14(2)        --------->AHL20(2)                     --------->MYB46(3)    <---------ARR11(1) ------>ZmHOX2a(2)                             --------->HSFB2a(1)  <---------ARR14(1) --------ARR14(2)       --------->TOE2(2)    <---------ARR14(2)     <---------CCA1(2) ------->ARR14(2)       --------->TOE1(2)    --------->ARR14(2) <---------At5g28300 --MYB46(3)   <----------ID1             <---------LBD16      --------->ZAT14 --------AGP1 --------->ANAC58          ------>ZmHOX2a(2)     <---------ZAT14<---------ANAC46  ------   ggatctgttttaaattaagccaaaaacctccgattagatcgatctcggaaccgtcgaaatacagttcaccgtatccgttgtttgtttttggtatatgtat  848100                                                                             <---------At4g35610                  <----------DOF2                                            --------->At4g35610       <-----------ARR10                                             <-------GAMYB       --------->ARR11(3)                                           <---------DEAR3(1) <---------HSFB2a(2)    <-----------GT1             XXXXXXXXXXXXXXXXXXXX>MIR4228 ->TEIL<---------ARR11(3)                      <----------DOF2      <---------MYB46(3)          -----   gtttgagaagctcttaccatctttgtttacaagtctggttcttggtaaactttagctatgaacaccatcgtcgttgctcagttgcagagacaatttcaag  848200                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                <----                                      ------>MYB83                                          ---------                                    <---------MYB59                                         <--------                                   --------->MYB46(3)                                       <-------TEIL                                ------>ZmHOX2a(1)                                           <--------                          <---------MYB46(3)                                                ---------                          <---------ANAC58                                                 --------->ALFIN1                          --------->MYB52(2)                       <----------DOF2      --------->DAG2                          <---------ANAC58                 <---------GLK1(2)            <---------TOE1(3)                         <-------TEIL ------>MYB46(1)      --------->ARR14(2)       --------->TOE1(3)                       <---------GLK1(2) <----------DOF2   <---------ARR14(2)----------->ARR10  <---- ---->ZAT6  <----------DOF2    <---------MYB59    <----------DOF2  <---------DAG2  --------->At4g35610   actacatcgtttctctttatcaacaggttcgttcctaaccaaacttttcttactttggctggattctcacttttgggcttagataagcttaaggtgcagt  848300 --------YAB1 --------ANAC46 --------ANAC55(1) -----ARR14(2)                 ---------->DOF2                               <---------ICU4 >ZAT14                <---------AHL20(2)     <-----------RAV1(1)    --------->HSFB2a(2) -ZAT14            <---------AHL20(2)        --------->ARR11(3)      <---------HSFB2a(2) -ZAT18           <---------AHL20(2)    --------->AHL20(2)          <---------LBD16 >ZAT18        --------->AHL20(2) --------->YAB1                 --------->GLK1(1) -----MYB52(1) <---------AHL20(2)--------->ICU4                  <---------GLK1(1)            -------   tatgtgtgaatttgaatttttttattttttttataaagatgatataatatgttgttgttttgaagggatttctggataatcagttctcagagttgagaaa  848400  Previous    Next  AGI:  At1g03410.1    Description:  2A6. similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G03400.1); similar to unknown [Prunus armeniaca] (GB:AAD38147.1); contains InterPro domain 2OG-Fe(II) oxygenase (InterPro:IPR005123) Range:  from: 844435    to: 847682    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g03420.1    Description:  transposable element gene Range:  from: 846663    to: 847738    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g03430.1    Description:  AHP5 (HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5); histidine phosphotransfer kinase. Identical to Histidine-containing phosphotransfer protein 5 (AHP5) [Arabidopsis Thaliana] (GB:Q8L9T7;GB:Q9LR80;GB:Q9MAY1); similar to AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2), histidine phosphotransfer kinase/ protein binding / signal transducer [Arabidopsis thaliana] (TAIR:AT3G29350.1); similar to putative histidine-containing phosphotransfer protein 4 [Populus x canadensis] (GB:CAH56502.1); contains InterPro domain Hpt (InterPro:IPR008207) Range:  from: 847872    to: 849499    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version