Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               ------>NtERF2                                             --------->LBD16                                       <-                                             <------NtERF2                                   <-------                                            --------->DEAR3(1)                              <--------                                            --------->RAP2.6(2)                 <---------At5g28300<-           --------->LBD16                ------>NtERF2                        <---------ALFIN1    --           --------->At4g35610            --------->LBD16                     --------->MYB46(3)   --           <---------At4g35610            <---------ATERF1(1)                <------ZmHOX2a(2)  -----          --------->ANAC46               --------->ANAC46                   --------->ARR14(2)  <----         <---------LBD16                 <---------ALFIN1                   --------->AGP1 ------>ZmHOX2a(2)    <---------CCA1(2)                  <---------ATERF1(1)                  <---------ARR14(2)  -----  <---------ALFIN1                  --------->ANAC58                        --------->ARR11(3)  ----- ----->ARR14(2)                     --------->ANAC46                       <---------At4g35610  <---- ------ARR14(2)                     --------->ANAC58                       --------->At4g35610<------ ----->GLK1(2)                    <---------ALFIN1                     <-----------HVH21 <---------ARR14(2) ----HSFB2a(1)                 --------->ANAC46                       <----------DOF2    --------->ARR14(2) --->HSFB2a(1)          <---------ATHB12 --------->DEAR3(1)        =================HOX2a_HOX2a------ --->HSFC1(2) <------NtERF2    <---------ALFIN1                    ------>ZmHOX2a(1)--------->ALFIN1 ----HSFC1(2) <---------At4g35610--------->ANAC46                  ===============================HOX2a_HOX2a   atccccatctctccgcagcgtctccaatcttctccaccacgctccgccgcgatatcaaatccatgcttcctcctttcagatccaccgtggggatcgtcag  846300         <---------DEAR3(1)      <---------AtMYB61 --------At4g35610 --MYB52(1)                                                                                --------->ANAC46 ---HVH21--------->ALFIN1                                                                  --------->ANAC58 --------ZAT2                                                                              --------->ANAC58 ------->At4g35610                                                                  --------->ANAC46 ------->ZAT2                                                                       --------->ANAC58 ---->At4g35610                            --------->LBD16                        --------->LBD16 -----At4g35610             <---------ANAC58    --------->ALFIN1                 --------->ANAC46<--- ---->ZAT2                  <---------ANAC58 <---------AtMYB61                   --------->LBD16<---- ------>RAV1(2)    --------->MYB52(2)    <---------LBD16                        <---------HSFB2a(2) -----ZAT2       <---------MYB52(1)    --------->GLK1(2)                <----------DOF2  <---------ALFIN1 -----RAV1(2)  <----------DOF2         --------->ARR14(2)         <---------GLK1(2) --------->ANAC58 --->MYB52(2)<---------At4g35610       <---------ARR14(2)     <---------ANAC46  --------->HSFB2a(2)   ctgctgcgaaggtggtgctgtttgtttcaggcttgttagagtatccggaggtgtatggaacatggctggaatctctttgattcccgaagccacaagccct  846400                                                                                              -------                                                                                              -------                                                                                             <-------                                                                                             <-------                                                                                             --------      <---------MYB52(1)          <---------WRKY18(1)                     <----------DOF2  ----------     <---------DEAR3(2)        <---------ANAC58                           --------------->AGL15 --------->ANAC58              <---------AtLEC2                           =========================== --------->ANAC58              <---------ANAC58 --------->ANAC55(2)       <---------------AGL15 --------->ANAC46         <----------DOF2       <---------ANAC55(2)   <----------DOF2  <---------ZAT14 --------HVH21       ---------->DOF2         <------ZmHOX2a(2) <---------ANAC58        --------->ZAT14 ------DOF2     <---------ANAC46<---------WOX13(1)             <---------ANAC58       --------->AtLEC2   ttcacgccggtttttgtctcgtcgaaagcttttgcttgacttgaacgatcacttgactccatcttgcttcttctttcttttttttgcaatgcacagattt  846500                                                                                     ---------->DOF2                                                                                    --------->AHL20(2) -->CCA1(2)                     --------->TOE2(3)                         <---------YAB1 -->GLK1(1)               <---------ZAT18                   --------->YAB1<---------TOE2(3) --ARR14(2)         --------->TOE2(3)               ---------->DOF2<---------------AGL15 --GLK1(2)        <---------ARR11(3)        <---------AHL20(2)    ==============================MADS_MADS ->ARR14(2) <-----------GT1 ------->TEIL   <---------AHL20(2)     ----------------->AGL3 ->ARR10 <---------YAB1---------->DOF2     --------->AHL20(2) ----------->HVH21 <---------------AGL15 ===================================================================================MADS_MADS  ------   gcataagtgctattattccacatcttaatgcacatcttaatacaattaaataacaaaaggaatcgtgacccatattaagataacaaataaagaaatgaat  846600                                                               *TSS                                                        <---------WOX13(1) --------->ANAC58                                                       <------------CBF    --------->ANAC58                                                      --------->ATHB12     --------->ANAC46                         ------------>CBF       <---------GLK1(2)  ---------->ID1                    <---------AHL20(2) <---------AHL20(2)      <---------MYB52(1)                   <               <---------MYB52(1)------>ZmHOX2a(1) --------->TOE2(3) <----------DOF2       --------->LBD16 ->TEIL     <-------TEIL<-----------GT1--------->AHL20(2)    <---------MYB46(3)          <---------LBD16   cgccaaaaacaaggtccattagtttatttcaattcctatattaaaatttggattcttaattggtcgtttgtctttacaagtaagaatagcatccggtttg  846700                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                   --                                                               <---------HSFB2a(2)                 <-                       -------->P                              --------->HSFB2a(2)              <----           <-----------GT1                                 --------->ZAT2  <---------ATHB12    ------          <---------AHL20(2)                  <-----------RAV1(1)    --------->ANAC46         <------          --------->AHL20(2)   <---------AHL20(2)  <---------ANAC58  --------->ANAC58         ------- ----------DOF2--------->ZAT14--------->AHL20(2)   <---------ANAC58  --------->ANAC58   ----------->RAV1(1)   aacttttgttaattaactacacacttaccatattaaatctcatcgccattgttgctcgcctagctctcgaaacgccactaattagcaaaacaacatttaa  846800 <---------ARR11(3) --------->ARR11(3) ---------GLK1(1) -------->GLK1(1) -------->RVE1(1) ---------CCA1(1)                                                                  ------>ZmHOX2a(2) -------->CCA1(1)                                                                --------->ARR14(2) ---------RVE1(1)                                                                --------->AGP1 ------->ARR11(3)                     <---------ZAT6                             <---------ARR11(3) --------ARR11(3)                <---------At4g35610                             <---------ARR14(2) -----TOE2(3)             <---------ATHB12                                       --------->ARR11(3) ---->DOF2               xxxxxxxxxxxxxxxx>smallRNA(s)  <----------DOF2      <-----------GT1<--------- ---AHL20(2)     <----------DOF2 --------->LBD16<-----------GT1    <-----------GT1<------ZmHOX2a(2) -->AHL20(2)  <------ZmHOX2a(1)<xxxxxxxxxxxxxxxxsmallRNA(s)       <-----------GT1<---------AGP1   agatatctcgtttggaggactttggacaatcgttccgctactgttcattttctctctctttgaagttttttccagtttttacagatctagttttttctgc  846900                                                                                        --------->LBD16                                                                                       --------->HSFB2a(2)                             --------->ANAC58                               --------->ALFIN1                             --------->ANAC58                               <---------ANAC58                           <---------AtLEC2                    ------>NtERF2<---------ANAC58  <------                      ------->TEIL                             --------->LBD16        <---------LBD16                   <---------YAB1                             --------->ANAC46<---------AtMYB61 -----             <---------TOE1(2)                    --------->ANAC58       <---------AtMYB61<--------P             <---------TOE2(2)          <------ZmHOX2a(1)    <---------LBD16<---------ANAC46  <------             <---------TOE1(3)        <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->ALFIN1<---------MYB52(1) --GT1       <---------TOE2(3)   ---------->DOF2  --------->ANAC58     <---------ANAC46<---------HSFB2a(2)   ctctgttcttcatcttaggttatgaatttgcaagacaaagcaggagtaaggcaagctatcttctccggcattggagtggtgtggtttttccggtaagcgt  847000                                                                        ------>ZmHOX2a(2)                                                                       <------ZmHOX2a(2)                                                                 --------->ALFIN1                                                               <---------MYB46(3)                                                               <---------DEAR3(2)                                                              <---------DEAR4(1)       <------NtERF2                                          <---------At1g77200      xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      <---------DEAR3(1)      --------->ABI4(2)                                    --------->TGA1a      ------>NtERF2                              ------>ZmHOX2a(1)   <---------GLK1(1)     <---------DEAR3(1)                          ==============================HOX2a_HOX2a     --------->ALFIN1                     <---------ARR14(2)  <---------DREB2C(2)   <---------MYB46(3)                     --------->ARR14(2)<-----------HVH21        <---------ANAC58  <---------DEAR3(1)                     <---------MYB52(1)=============MYC_MYB      <---------ANAC58 <------NtERF2                         <---------ANAC58    <---------TGA1a  --------->ZAT14 <---------At4g35610         <---------HSFC1(2)  --------->LBD16<-------GAMYB     <----------DOF2 --------->At4g35610         --------->HSFC1(2)  =============================HOX2a_HOX2a       <---- ---ANAC58 <----------DOF2 xxxxxxxxxxxxxxxx>smallRNA(i)    ==================================bZIP_DOF ---->ALFIN1        <---------MYB46(3) <---------ANAC58   ------->TEIL<---------ARR14(2)       ------ ---ANAC58<xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <-----------------AGL2--------->ARR14(2)     <-------   ggcagcggtggccctttctcggtggatgagaggcttctcttccgtttcttcctggttatggacgtcggtggagatcggtgaagtctttcttggttcaacc  847100                                                                                                <----                                                                                                <----                                                                                                <----                                                                                                <----                                                                                               <xxxxx                                            <------MYB46(1)                                 <-------GAMYB                                <---------ANAC46                                           <---------MYB46(3)                        <------NtERF2       <------MYB83                             xxxxxxxxxxxxxxxx                      <---------ANAC58     <---------MYB46(3)                       xxxxxxxxxxxxxxxx>smallRNA(s)                      <---------ANAC46    <---------ANAC46                       ------>ZmHOX2a(2)                      <---------ANAC58  <------MYB83                            <---------At4g35610                     <---------LBD16    <------MYB46(1)<---------ANAC58        --------->ARR14(2)   <                   --------->ALFIN1    <---------MYB46(3)                      <---------ARR14(2)   -                   <---------DEAR3(1)  --------->ALFIN1<---------ANAC58        <---------ARR11(3)---- -----ALFIN1     <-----------RAV1(1)   <---------AtMYB61          <-------GAMYB<---------AGP1  <----- --->MYB46(3)  --------->At4g35610    <---------WOX13(1)         <---------MYB46(3)xxxxxxxxxxxxxxxx>smallRNA(s) ----GT1       <---------At4g35610   <---------ARR14(2)<---------ANAC46  --------->MYB52(1)<---------   acttggttagacgctgtagctgtggcggaagacgctgtggattggtgggttttcagtgcgtgtttgatggttaacaaactggatctgagatggctgttgc  847200  Previous    Next  AGI:  At1g03410.1    Description:  2A6. similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G03400.1); similar to unknown [Prunus armeniaca] (GB:AAD38147.1); contains InterPro domain 2OG-Fe(II) oxygenase (InterPro:IPR005123) Range:  from: 844435    to: 847682    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g03420.1    Description:  transposable element gene Range:  from: 846663    to: 847738    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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