Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          --------->At4g35610        <---------At4g35610       <---------MYB46(3)      <--------P     <---------MYB52(1)     <-------GAMYB    --------->LBD16   <---------ANAC46                                                                        --------->HSFB2a(2)  <---------LBD16                                                                       <----------DOF2 -------->ARR14(2)                                                                     <---------ANAC58 ---------ARR14(2)                                                                 <----------DOF2 ----->LBD16                                                                <---------TOE1(3) -----ANAC55(1)                                                      --------->LBD16   <---------ANAC58 -----ANAC58                                                    --------->WOX13(1)<---------ANAC58 -----ANAC58                                                  <---------ATHB12 <--------P  <---------HSFB2a(2) -----ANAC46                                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ----LBD16                            <----------DOF2   ---------->ID1      <---------TOE2(3) --RAV1(1)                    <---------ALFIN1   <---------MYB52(1)<---------LBD16<---------ANAC58   gggttccggttgctgaagggttgtctgagccatcacccttctttagcctccgttttttgtctccatcaatccggattgaaggttgctttgcttttggaaa  847300                                                                                          <---------ANAC46                                                                                          --------->ETT(1)            xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                    <---------ANAC46          <---------TOE2(3)                                                       <---------ANAC58          <---------TOE1(2)                                                       <---------ANAC58          <---------TOE1(3)                                                      --------->ATERF1(1)         <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                      <------NtERF2        xxxxxxxxxxxxxxxx>smallRNA(s)                                             <---------LBD16       ------>ZmHOX2a(2)                                                        <---------ATERF1(1)      <------ZmHOX2a(2)                                                        --------->ALFIN1      --------->CCA1(2)                  --------->ALFIN1                      <---------DEAR3(1)     <---------ARR14(2)                <---------ANAC58      <---------ZAT18 <---------ANAC46     --------->AGP1                <---------GLK1(1)       <------MYB83 ------>MYB46(1)--------->ALFIN1     <---------AGP1          <---------ANAC58              <------MYB46(1)   <---------ANAC58     <-----------ARR10       <---------ANAC46             --------->ALFIN1   <---------ANAC58     --------->ARR11(3)      <---------ANAC58       <---------ANAC58    ------>MYB83<------NtERF2     --------->ARR14(2)  <---------At4g35610        <---------ANAC58  <---------MYB59<---------ANAC46     <---------ARR11(3)<---------WRKY12<---------ANAC46  --------->ALFIN1   <---------MYB46(3)    <---------CCA1(2)<-----------HVH21 <---------ANAC58  <--------P  ----------------->AGL1  <-------   attttcagatctaaggttttggaggtcagaggcttggaaatgcgtggtcgttttgcgaggttggggactcgaccaaattgggtggcggagtgtcggaaac  847400                                  <---------ZAT2                                               ------                                  <---------At4g35610                                          <-----                  <-------GAMYB   --------->At4g35610                                         -------                 <-----------RAV1(1)                                                xxxxxxxxxxxxxxxxx                 --------->MYB52(2)                                                 ------>ZmHOX2a(2)                 <---------MYB46(3)                         ===============================HOX2a_HOX2a             <------MYB83  --------->SPL7                   <------ZmHOX2a(1)     <---------ARR11(3)             <------MYB46(1)      --------->ZAT2          xxxxxxxxxxxxxxxx>smallRNA(s)        <------            --------->MYB59<-------TEIL                 <------NtERF2             --------->ARR11(3)<          <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <---------RAP2.3(2)        --------->YAB1------          <<<<<<<<<MYB98 --------->ARR14(2)           <---------RAP2.6(2)       xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <---------MYB52(1)<---------RAP2.6(2)   --------->CCA1(2)             <---------ATHB12<----         <-------GAMYB   <-----------HVH21        <---------GLK1(1)          xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxxx>smallRNA(s) --------->ATHB12<---------LBD16       ------>NtERF2     <-------     <-----------GT1     <---------ARR14(2)      --------->ARR14(2)--------->ARR14(2)       --------- --ARR14(2)<---------MYB55(1) ------>NtERF2      <---------ARR14(2)<---------ARR14(2)     <---------LBD16   tgggttttttccgttaggtttgttgcaggtccggccagctcattggtaagagatttgcggcaggactcgtatacttcggccaatgatctcgttccggtgg  847500      ---------->DOF2                                --------->ATERF1(1) --->MYB55(2)                                       ------>NtERF2 ----MYB46(3)                                       <---------ATERF1(1)                           --- -->ALFIN1                                 ------>ZmHOX2a(2)                                      --- xxx>smallRNA(si3)                       <---------ARR11(3)                                       --- ---AtMYB61               --------->ANAC46<------ZmHOX2a(2)                                      <--- -----------RAV1(1)  <xxxxxxxxxxxxxxxxsmallRNA(i)--------->At4g35610       <---------ALFIN1      <--- --->MYB52(2)     <---------ANAC46       --------->ARR11(3)    <---------At4g35610       <----------DOF2 ---GAMYB       <---------PCF2           <---------AGP1       <---------ALFIN1--------->AtMYB61 <---- --MYB52(1)   <---------ZAT18            --------->AGP1------>NtERF2    --------->ARR14(2)      ----- >LBD16      --------->ALFIN1 <---------DEAR3(2) <---------At4g35610    <---------ARR14(2)    <------   ttgtgttgcaaagtagtgggccttgtatacgacggtactaatagatctatttgctgcctccgttccactgcccaaatccacctctggttctctttttccg  847600          <-----------GT1                             xxxxxxxxxxxxxxxx>smallRNA(s)     <---------ARR14(2)                   <---------ANAC58     <---------GLK1(2)                    <---------ANAC58     --------->ARR14(2)                   <---------LBD16                                         <--   --------->LBD16                       <---------LBD16                                          --- <---------LBD16                    <---------YAB1   xxxxxxxxxxxxxxxx>smallRNA(s)                <--- ------>WRKY12                    ----------->GT1   ----------------->AGL1                       ---- -------->HVH21                   --------->YAB1  xxxxxxxxxxxxxxxx>smallRNA(s)                   <--- ------>WRKY38(1)              xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                ---- ------MYB52(1)              xxxxxxxxxxxxxxxx>smallRNA(s)                                        <--- --------HVH21              xxxxxxxxxxxxxxxx>smallRNA(s)                                         ---- -----At4g35610        <------------AtMYB77  ------>NtERF2            <----------DOF2           ----- ---->LBD16  ------>ZmHOX2a(1) xxxxxxxxxxxxxxxx>smallRNA(s)        ------->TEIL   *TSS          <---- ---LBD16<-----------GT1   <---------ETT(2)--------->LBD16    <xxxxxxxxxxxxxxxxsmallRNA(s)  ---------   gtgaccggatttttcctgttttgtaactgtggacgattgtaattccgggcctaagcccaattgggactggacctttttttttaaaaaaaaaaaaaaaaga  847700                                                                                   ------->TEIL                                                                                <---------ANAC58      <---------MYB46(3)                                                        <---------ANAC55(2)      --------->MYB52(2)                                                        --------->ANAC55(2) -------ARR11(3)                                        --------->ANAC46        <---------ANAC58 ------>ARR11(3)                                  --------->GLK1(1)            --------------->AtSPL8 ------GLK1(1)                                    --------->CCA1(2)            --------------->AtSPL3 ----->GLK1(1)                                   --------->ARR14(2)           <-----------GT1 ------RVE1(1)                                   <---------GLK1(2)        --------->AHL20(2) ----->CCA1(1)         --------->ANAC58          <---------ARR14(2)   <---------AHL20(2) ------CCA1(1)         --------->ANAC58        ----------->ARR10      --------->AHL20(1)          --- ----->RVE1(1)     --------->ANAC58       <---------AHL20(2)          <---------AHL20(1)  --------->AHL20(2) ---->ARR11(3)     --------->ANAC58      --------->AHL20(2)           --------->AHL20(2)  <---------AHL20(2) -----ARR11(3) --------->ANAC58         ----------->TBP --------->ANAC58 <---------AHL20(2)      ---- ->DOF2        --------->ANAC58   <---------CCA1(2)     --------->ANAC58 <---------YAB1  <---------WOX13(1)   tatctcgtttgtggagaacgcatgctagcaacttccctatctataaaatcagatttgcaccccacaaactaaaatattatttacgtacttgattaattcc  847800                                                               ------->MYC3                                                               <-------MYC3                                                               ------->MYC2                                                               <-------MYC2                                                              <---------ANAC46                                                          ------->GAMYB                                                         --------->ANAC46                                                         --------->ANAC58                                                        --------->At4g35610                                                       <---------DOF5.7(2)                                                       --------->MYB52(1)                                                      <---------WRKY38(1)                                                      <---------WRKY12<---------AHL20(2)                                                      <---------WRKY45--------->AHL20(2)                         --------->ANAC46            --------->WRKY18(1)*TSS <-----------GT1                        ------->GAMYB               <-----------HVH21 <---------AHL20(1)            < --------->CBF       <-----------GT1               --------->WOX13(1) --------->AHL20(1)          <-- -->ZmHOX2a(1)    --------->YAB1       <---------AHL20(2)--------->ANAC58 --------->YAB1      <------ZmHOX2a(2)   tacaatatagtcatttacaaaaataaccctccatttgatatttaagtcaaaatcagtcaacggaacgtggaataaattataactttcgacgctccgatca  847900         --------->At4g35610       <---------ICU4    <---------ICU4                                                                                 <-    --------->YAB1                                                                                 -- --------->YAB1                                                               <----------DOF2<------- -------TEIL        <-----------HVH21           <---------MYB52(1)     --------------------->WRI1  <- -------GLK1(2)    <-----------RAV1(1)    <---------GLK1(2)            <----------DOF2    <---------MYB46(3)   gattcatcatcatctctctctgtgtcgctccgattttgaatttggaatctcttagttaagttggaagtttgttctttggtcttttcgcctagttgttgtt  848000                                                  XXXXXXXXXXXXXXXXXXXX>MIR2111B*                                                --------->DEAR3(1)                                               <---------HSFC1(2)                                               --------->HSFC1(2)         <---------MYB52(1)              <----------ID1                   <---------HSFB2a(1)   <---------ARR14(2)        --------->AHL20(2)                     --------->MYB46(3)    <---------ARR11(1)        <---------AHL20(2)                     --------->HSFB2a(1)   --------->ARR14(2) ------>ZmHOX2a(2)                             --------->DEAR3(2)   <---------CCA1(2) --------ARR14(2)       --------->TOE1(2)    <---------ARR14(2)     <---------ARR14(1) ------->ARR14(2)       --------->TOE2(2)    --------->ARR14(2) <---------At5g28300 --MYB46(3)   --------->ANAC58           <---------LBD16      --------->ZAT14 --------AGP1 --------->ANAC58          ------>ZmHOX2a(2)     <---------ZAT14<---------ANAC46  ------   ggatctgttttaaattaagccaaaaacctccgattagatcgatctcggaaccgtcgaaatacagttcaccgtatccgttgtttgtttttggtatatgtat  848100                                                                             --------->At4g35610                  <----------DOF2                                            <---------At4g35610       <---------ARR11(3)                                            <-------GAMYB       --------->ARR11(3)                                           <---------MYB46(3) <---------HSFB2a(2)                                XXXXXXXXXXXXXXXXXXXX>MIR4228 ->TEIL<-----------ARR10<-----------GT1        <----------DOF2      <---------DEAR3(1)          -----   gtttgagaagctcttaccatctttgtttacaagtctggttcttggtaaactttagctatgaacaccatcgtcgttgctcagttgcagagacaatttcaag  848200  Previous    Next  AGI:  At1g03410.1    Description:  2A6. similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G03400.1); similar to unknown [Prunus armeniaca] (GB:AAD38147.1); contains InterPro domain 2OG-Fe(II) oxygenase (InterPro:IPR005123) Range:  from: 844435    to: 847682    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g03420.1    Description:  transposable element gene Range:  from: 846663    to: 847738    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g03430.1    Description:  AHP5 (HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5); histidine phosphotransfer kinase. Identical to Histidine-containing phosphotransfer protein 5 (AHP5) [Arabidopsis Thaliana] (GB:Q8L9T7;GB:Q9LR80;GB:Q9MAY1); similar to AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2), histidine phosphotransfer kinase/ protein binding / signal transducer [Arabidopsis thaliana] (TAIR:AT3G29350.1); similar to putative histidine-containing phosphotransfer protein 4 [Populus x canadensis] (GB:CAH56502.1); contains InterPro domain Hpt (InterPro:IPR008207) Range:  from: 847872    to: 849499    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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