Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            --------->ANAC46                                                     ------>ZmHOX2a(2)     <---------GLK1(2)                              <------ZmHOX2a(2)     --------->ARR14(2)                             --------->GLK1(1)   --------->LBD16                                 --------->ARR11(3)  --------->HSFB2a(2)                              <---------ARR11(3)  <---------HSFB2a(2)                              --------->ARR14(2) ----->ZmHOX2a(1)                                  <---------AGP1--------->GLK1(2)                 -- -----ARR14(2)                                     <---------ARR14(2)                          ------ ---->ARR14(2)      ------>MYB83                   <---------ARR14(3)                         ------- --->GLK1(1)        ------>MYB46(1)                <-----------ARR10                        <-------- ----GLK1(1)  --------->ZAT14                      --------->ARR14(3)              ----------->HVH21   tcctccagaattgctctgtaccaagcgtttctaaacccatcttcttcagagaagatctctacttcacaatctttgaaaatcgccattgacagaaactaac  813100                                                                              <---------ARR11(3)                                                                         ------------>CBF                                                                      --------->RAP2.6(3)                                                                   ---------->DOF2 ------->ICU4                        ----------->GT1            --------->TOE1(3)                   - ------>CBF                     ---------->DOF2                 --------->TOE2(3)         ----------- -->MYB52(1)          --------->TOE1(3)                      <---------ALFIN1 --------->ARR14(2)    - -MYB52(2)            --------->TOE2(3)                   ----------->HVH21   <---------ARR14(2)    <   aatgtttaggctccaaaaacaaaaccctaaaaacaaaagtagtaaaaatccactcttgaagtgacaccttaaaacggcaatatccactcttgaagtgaaa  813200                                                                -------->ATHB1                                                                --------->ATHB51                                                                --------->ATHB12                                                               --------->AHL20(1)                                                               <---------ATHB51                                                               --------->ICU4                                                               <---------AHL20(2)                                                             <---------ICU4                                                    ------->TEIL<---------ICU4                                                    <---------ARR14(2)       <---------ZAT18                              <---------ARR11(1)     --------->At4g35610                            --------->ARR14(2)                         <-----     <---------At4g35610                         <---------ANAC58                             -------     --------->ZAT2                              <---------ANAC58<------------CBF             <------ -------->ZAT2   <---------ANAC46               ---------->ID1 <---------YAB1         <-----------RAV1(2) >GT1<---------ZAT2                  --------->DAG2<---------ARR14(1)              ------>NtERF2 -------->At4g35610                 ---------->DOF2<---------CCA1(2)             --------->ATERF1(1) ---------At4g35610     <----------DOF2    <----------DOF2--------->YAB1        <---------ATERF1(1)   acagctcagctcacttctgtcttgaactttcaaaactgaaaagtacttttgtcgtatctttcaaaattattgggcctatgggctcggcccagataagatc  813300                                                                                <---------AtMYB61                               ------->MYC3                                  --------->ALFIN1                          <---------ANAC58                                   <---------REM1(1)                          <---------ANAC58                                 <---------At4g35610                      <---------DAG2                                       --------->At4g35610                 --------->ANAC58                                          <---------ANAC46                ------->MYC3   ------->MYC2                            <-----------HVH21                <-------MYC3   <-------MYC3                           --------->TGA1a          ------->GAMYB<---------SPL7                                 <---------TGA1a         --------->MYB46(3)<---------LBD16                            <------NtERF2         <--------        -------->P  ------->TEIL                                      <---------ANAC46      <--------  <----------DOF2--------->ANAC58        <-----------GT1              <---------ANAC58      <-------- -ZmHOX2a(2)    <-------MYC2   <-------MYC2                           <---------ANAC58  <---------HSFB2a(1) -->ARR11(3)    ------->MYC2  <---------ANAC58             <---------MYB52(1)----------->HVH21 ---ARR11(3) <---------ALFIN1 <---------ANAC58        <-----------GT1------>NtERF2 --------->ALFIN1   actccttttcaacccccacatgcaccttacgcgcgtgtctatgttacaatcgctaaaaaccgttttgtaggcgcgtgaggtgaaggtggagagttcgtga  813400                                                                                                -----                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                              -------    <----------ID1              --------->AHL20(2)                             --------->At4g35610 -ANAC58                 --------->ANAC58                                 --------->YAB1<---------ZAT6 -ANAC46                 --------->ANAC58 --------->YAB1               *TSS  <-----------RAV1(2)<---- -ANAC58                 --------->ANAC46<---------ATHB12    <-------TEIL<------ZmHOX2a(2)    <------   aggaagaagacaaaacatttcagtttcacccaaaaaaaatcaaatcataaactcatggacacatacactcactcgatcatcagatgggtagtgttagata  813500          --------->ATHB12          <--------ATHB1          -------->ATHB1          <---------ICU4          --------->YAB1         <---------ATHB12         --------->ICU4       --------->WOX13(1)      ------------>ATHB5                                           <---------ANAC58 ---->ARR11(3)                                                     <---------ANAC58 --->GLK1(1)                                    <----------DOF2  <---------YAB1 --->RVE1(1)                          <------MYB46(1)         --------->ICU4 ----GLK1(1)                          <------MYB83            <---------YAB1             <---------DAG2 --->CCA1(1)                   --------------->AGL15      <------NtERF2  --------->ANAC46<----------DOF2 -->ARR11(3)                  ----------------->AGL3    <---------ANAC46 ----------->HVH21 -----ARR11(3)                <-----------------AGL1    <---------DREB2C(2)       --------->At4g35610 ---ARR11(3)        --------->GLK1(2)--------->MYB59    <---------DEAR3(1)----------->RAV1(1)   tctctgtttcaatcattgtgaaattctctgtttccaagtttggttttttgcttcaatggcggtgatgatgcttatgcgacagtaagctcgacttttttga  813600                                                                                   <---------O2                                                                                   <---------TGA1a                                                                               --------->LBD16                                                                              --------->LBD16                                               <---------ICU4               ------>ZmHOX2a(2)                                               -------->ATHB1             --------->ARR11(3)                                               <--------HAHB4             <---------ARR11(3)                                               --------->ATHB51       --------->YAB1                       <---------ANAC46        --------->AHL20(2)     <---------ICU4                       <---------ANAC58        <---------AHL20(2)    <---------ATHB12               <-----------GT1                <---------ATHB12      ------->TEIL   --------->O2             <----------DOF2     <----------DOF2         <---------ZAT6 <---------YAB1      ---------->ID1   <---------ANAC58       <---------ATHB51 --------->At4g35610 --------->TGA1a  <---------MYB52(1)<----------DOF2           --------->ICU4   <---------At4g35610 ==================   cgacgtttgtctcttctttacgctttcttgtgttccttttttttttcaattatttcttagtgttccgatgaatcatgatcccgagacgtcttgttcttgt  813700                  --------->TOE2(3)               <----------DOF2            <---------ARR11(3)       <---------ZAT18     <---------HSFB2a(2)       <---------ZAT14     <---------HSFC1(1)       --------->ZAT18     --------->HSFB2a(2)      <------ZmHOX2a(1)       --------->ZAT14     --------->HSFC1(1)      <------MYB46(1)     --------->ANAC46     <---------LBD16          <------MYB83                <---------YAB1   <-----------GT1--------->YAB1                 <--------P          <------MYB46(1) =========================bZIP_DOF             <---------MYB46(3)    <------MYB83        <----------DOF2   tgattctactacactatctttcttaatttctggaaatttgaaatgccgatggtaggaaaactttgctaagtgggttctgttttgattttagctttgagat  813800                                                                                                 <---                                                                                    --------->YAB1                                                                                    --------->TOE2(3)                                                           <---------AtMYB61<---------ANAC58  <------      <---------At4g35610--------->ATHB12                <----------DOF2    <---------ANAC58  -------    <-----------GT1  ----------->GT1               --------->GLK1(2)     <----------DOF2  ---------->DOF2   gggaatttagcttattcaacgagttgtttattggatatagtttcccttgcgaaattctgctttggtttctgttttctttcgttcaatcttaataaagagc  813900                                      <---------LBD16                                     ----------->RAV1(2)                                     ============================RAV                                --------->YAB1                               <-------TEIL                            --------->KAN4(1)                            --------->GLK1(1)                                           <-----------HVH21                           <---------ARR11(3)              <----------DOF2    <---------ANAC46          ------>ZmHOX2a(2)--------->ARR14(2)          ---------->ID1         <---------ANAC58 -------DOF2               --------->ARR11(3)        <-----------RAV1(1)      <---------ANAC58 ---ARR11(3)               <---------KAN4(2)  <---------TOE2(3)              <------NtERF2   <------- -->ARR11(3)               <---------ARR14(2)---------->DOF2               <---------RAP2.3(3)   tttggggtttgatctgtgttcttaacagggatattcataacctggattaaagtttttggtgctttgtttaaacaatggctgcgtggtcaccatcagttgg  814000  Previous    Next  AGI:  At1g03300.1    Description:  agenet domain-containing protein. similar to agenet domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G47230.1); similar to Agenet domain containing protein [Brassica oleracea] (GB:ABD65016.1); contains InterPro domain Tudor-like, plant (InterPro:IPR014002); contains InterPro domain Protein of unknown function DUF724 (InterPro:IPR007930); contains InterPro domain Agenet; (InterPro:IPR008395) Range:  from: 811033    to: 813086    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g03310.1    Description:  ATISA2/BE2/DBE1/ISA2 (DEBRANCHING ENZYME 1); alpha-amylase/ isoamylase. similar to ATISA3/ISA3 (ISOAMYLASE 3), alpha-amylase [Arabidopsis thaliana] (TAIR:AT4G09020.1); similar to isoamylase-type starch-debranching enzyme 2 [Phaseolus vulgaris] (GB:BAF52942.1); similar to isoamylase isoform 2 [Solanum tuberosum] (GB:AAN15318.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22494.1); contains InterPro domain Glycoside hydrolase, family 13, N-terminal; (InterPro:IPR004193); contains InterPro domain Immunoglobulin E-set (InterPro:IPR014756); contains InterPro domain Glycosyl hydrolase, family 13, catalytic region; (InterPro:IPR00604 Range:  from: 813471    to: 816749    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version