Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        <-----------RAV1(1)                                    <---------ANAC55(1)                                    --------->ANAC55(2)                                        <-----                                    <---------ANAC55(2)                                        <-----                                    <---------ANAC46      <---------MYB52(1)               <-------GAMYB                                 <---------MYB52(1)      <-------GAMYB<---------ICU4      -----------                               <---------ZAT6           <-----------RAV1(1)               <---------MYB46(3)      ---------->DOF2        <---------At5g28300  <---------YAB1  --------->ICU4        <-------MYC3 ---TOE2(3)               <-------GAMYB       <---------ANAC46    --------->AHL20(2)    ------->MYC3 ---TOE1(3)              --------->ALFIN1<---------MYB46(3)  ----------->GT1      ----------->HVH21   ttttggacaaaagtccaatttacaagggtgttactgttaagtgttgttgtttataattctgttgggaaatatttatggcgatatttgacatgtggttaag  807000                                                                                   --------->MYB52(1)                                         ----------->GT1                        --------->YAB1                                         <---------ANAC46                     --------->ANAC58                                      <----------DOF2                         --------->ANAC58                                     <---------ANAC58                         --------->ANAC46  <---- ----ANAC46        <----------DOF2   <---------ANAC58                     XXXXXXXXXXXXXXXXXXXX>MIR416 ----ANAC55(1)     <---------DAG2 ---------->ID1                         <-------TEIL --------->TOE2(3) >GT1     <---------AHL20(2)--------->ICU4                             <---------GLK1(2)<-------TEIL   tgtatttttgaattaatctctctttttgtaatttttgtttctttcgtaaattagataaatctgttgagaaatagattcacacgcataacgttcatttgct  807100                                                                                   <-------TEIL                                                                               --------------->AtSPL8                                                                               <---------------AtSPL8                                                                            <---------AHL20(2)                                                                         <---------ICU4             ----------->GT1                                       --------->WOX13(1)         --------->ARR11(3)                ----------->GT1     --------->ANAC58--------------->AtSPL3         <---------AHL20(1)            <---------YAB1          --------->ANAC58<---------TOE2(3)         --------->AHL20(1)           <---------AHL20(2)       --------->ANAC46<---------TOE1(3)   ----------->GT1                    <---------AHL20(1)  <----------ID1<---------YAB1   --------->LBD16                  <---------YAB1    --------->AHL20(2)--------->ICU4  --------->HSFB2a(2)     <---------AHL20(2)      --------->AHL20(1)  <---------ICU4  <---------HSFB2a(2)     <---------AHL20(1)      --------->AHL20(2)  --------->YAB1 -----------AGL15         --------->AHL20(2)      <---------AHL20(2) <---------ATHB12<----------DOF2   tcatccagaaaaatattggaaaaactaattaattcagtattatttttgtaaataaaataaacaacaagccaatcataatttaaggtactttcccagttcg  807200                                                                       <-----------HVH21                                                                      --------->TGA1a                                                                      <---------O2                                                                      --------->O2                                                                      --------->bZIP60(1)                                                      <---------MYB59 <<<<<<<<<<AtbZIP1                                                    ------->TEIL      ===================bZIP_DOF                                               <---------ANAC58       --------->ANAC58                                               <---------AtLEC2       <---------TGA1a                                           <-------GAMYB--------->MYB52(1)                                           =====================================MYC_MYB                                          --------->MYB111(2)         --------->ANAC46                                          --------->MYB55(2)          --------->ANAC58                                          --------->MYB52(2)          --------->bZIP60(2)                  --------->AHL20(2)      --------->MYB111(1)    --------->ANAC58                  --------->YAB1          <---------MYB46(3)     --------->ANAC58                --------->AHL20(2)      <---------ANAC58------>MYB46(1)<-----------TGA1             --------->AHL20(2)        <---------MYB46(3)   --------->LBD16           --------->MYB46(3)           ----------->GT1   <---------ANAC58  <---------ANAC58=================bZIP_DOF           <-         ---------->DOF2     <---------ANAC58  <---------ANAC46---------->DOF2---------->DOF2      --        <---------ATHB12  ---------->ID1<---------ANAC58------>MYB83  <---------bZIP60(1)   <--------   acaaaatccaataaagaaaataatatttgtcccttgcccattggttgttgcatggacctagccgagaaagccacgtcagtgaaagtcaacaacttgaccc  807300               ----------->RAV1(1)            --------->ANAC55(1)            --------->ANAC58         --------->ANAC46            --------->ANAC58       --------->ANAC46            --------->ANAC55(2)    <---------ALFIN1            <---------ANAC55(2)    ----------->RAV1(1)          --------->GLK1(1)       --------->MYB46(3)          --------->CCA1(2)       <---------MYB55(2)         --------->ARR14(2)      ------>MYB46(1)                  --------->TOE2(2)              <---         <---------ARR14(2)      ------>MYB83                     --------->TOE1(2)             *TSS     <---------LBD16            --------->ANAC46                 --------->YAB1         --------->MYB52(2) --------ARR14(2)        <---------YAB1   --------->ANAC58     <---------DOF5.7(2)   --------->TOE2(3) ------->ARR14(2)      <-----------GT1    --------->ANAC58   --------->DOF5.7(2)     <----------DOF2 -WRKY18(1) --------->ANAC46   --------->AtMYB61     ------>ZmHOX2a(1)  --------->CCA1(2)  <---------   aaataccctcggatacgcaacaaaattacgataccacccacagcacgacttagtcctcaagtcgttaacataagagacggagcaaaactttagttacaaa  807400                           <---------At4g35610                --------->At4g35610                <---------At4g35610             ------>ZmHOX2a(1)      <---------At4g35610          ------>ZmHOX2a(1)--------->At4g35610  <---------ANAC58         <---------ALFIN1  --------->ZAT2       <---------ANAC58       ------>ZmHOX2a(1)   <---------ZAT2 ------>ZmHOX2a(2)                        ---------->ID1    ------>ZmHOX2a(1) ===========================HOX2a_HOX2a             ---------->DOF2 ------ATHB12====================================HOX2a_HOX2a ----------->GT1     <------------------- --GT1<---------ALFIN1------>ZmHOX2a(1)  --------->GLK1(1)--------->GLK1(1)   <----------DOF2   tcgttcctcctcctcctcatcttcctcacagctctcgcttctgatctcttacttgcacagaaatcgaaaattttctaaagcttttgttctattctcttcg  807500                                                    <---------AHL20(2)                      <--------                                           --------->LBD16                         --------->YAB1                                          <---------ANAC58                        <---------YAB1                                          <---------ANAC46            ------>ZmHOX2a(2)     ---------       <---------MYB52(1)                 <---------ANAC58        <---------YAB1<---------ICU4------>ZmHOX2a(2)   ------>ZmHOX2a(1)                     <---------LBD16    --------->ATHB12<---------HSFB2a(2)    -- -----ANAC81                           <-----------GT1     <---------YAB1   --------->HSFB2a(2)<-----   ttttcctctggtaattgaatcgtcgaatttgaaacttgattttcccgtgtgtatttttttgatgatttgtgatcgtttctaaaaattatagtttgatctt  807600                     <---------ANAC46                     <---------RAP2.6(2)                    --------->RAP2.6(3)                  <---------YAB1                                                                    <                <---------ICU4                                                                      <        <---------MYB52(1)                                           <-----------GT1                -     ------>ZmHOX2a(2)------>NtERF2  <----------DOF2            <------MYB46(1)                     < <---------YAB1--------->ICU4   <---------ARR11(3)             --------->MYB59                     -- -ARR11(3)     <---------YAB1   --------->ARR11(3)             <---------TOE2(3)                   -- >ARR11(3)  <---------YAB1     <---------CCA1(2) <----------DOF2<------MYB83                       -- ------->YAB1<---------ICU4<------MYB83  <-----------GT1  <---------YAB1                ---------->DOF2 -----DOF2  --------->ICU4 <------MYB46(1)  <----------DOF2--------->ATHB12  <-----------GT1   ------   ttcatgatccgttgatgattatgacggctaggtatatctcttttctcttttcttttttttttgattaggttttacaattctacaattttagaaagcttga  807700                                                                                              <------                            --------->ATHB12                                                 <------- ------MYB46(1)             <---------ICU4                                                   -------- ---------ANAC55(2)        <------ZmHOX2a(2)   --------->ZAT18                               <------- -------->ANAC55(2)        <---------YAB1      <---------ZAT18                            <---------ANAC55(2) ------MYB83          <---------LBD16          <---------ZAT14                            --------->ANAC55(2) ------->MYB59  <-----------GT1                --------->ZAT14                            --------->ANAC58 ------->MYB46(2)  <---------DAG2           --------->At4g35610                           --------->ANAC58 ------->MYB111(1) <----------DOF2          <---------At4g35610                          <---------LBD16 --->ATHB12     ---------->ID1      <----------DOF2           --------->ALFIN1       <---------CCA1(2)   ttaggtgatactgagtttgtacttttcggatcattgctcttttgtcttctgcacttgtatgagagtgtgtctctctcatctattttcatatcacggattt  807800                                                 <----------DOF2             <---------HSFB2a(2)                                                <---------ANAC58       <---------AHL20(2)                                                <---------ANAC58       --------->AHL20(2)                                           =================bZIP_DOF   <---------ICU4  <---------ANAC46                                           <---------ANAC46            --------->ATHB51<---------ANAC58                                           <---------O2               --------->AHL20(2)                                           <---------TGA1a            <---------AHL20(1)                                           <-----------RAV1(1)        <---------AHL20(2)                    <---------TOE1(3)      <---------bZIP60(2)     <---------AHL20(2)  <---------ANAC58 ---RVE1(1)         <---------TOE2(3)      <---------REM1(1)       --------->AHL20(2)--------->ARR11(3) --GLK1(2)     --------->ZAT6       <---------ANAC58            ----------->GT1   <---------GLK1(2) ->ARR14(2)   <---------TOE2(3)     <---------ANAC58            --------->YAB1--------->LBD16 --ARR14(2)  <-----------GT1        <---------ANAC46           <---------YAB1--------->HSFB2a(2)   tttcttcagggtttttaacattagggttttcacaagaggcttgtgatgtggctttactagtttatatgataaattatttccagagaatttcttgtatgct  807900  Previous    Next  AGI:  At1g03280.1    Description:  transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein. similar to transcription initiation factor [Arabidopsis thaliana] (TAIR:AT4G20340.1); similar to Os08g0343300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061594.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ72889.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Transcription factor TFIIE, alpha subunit; (InterPro:IPR002853) Range:  from: 803035    to: 807066    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g03290.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G02880.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22500.1); contains InterPro domain UBA-like (InterPro:IPR009060) Range:  from: 807396    to: 810690    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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