Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        --------->MYB52(1)                                                                  <-------TEIL        --------->YAB1                                         ----------->GT1        <---------ICU4                                    --------->AHL20(2)                 --------       <---------ATHB51                                   <---------AHL20(2)           <---------WRKY18(1)       --------->ICU4                                     <---------AHL20(1)       --------->At4g35610 ------>DAG2                                              --------->AHL20(1)       --------->ZAT2 ------>DOF2                  ---------->DOF2<----------DOF2  <---------------AtSPL8 <----------DOF2 -----AHL20(2)      ---------->DOF2      ---------->ID1  <---------ATHB12       <---------At4g35610   aaagttgaaataatgaacaaaaaaaagagaagaaaagagttttgtttctttcaaaaccaataaaatggtacataccgatttcatcagcttgaacgatatg  802600                                                                                                    <                   <---------At4g35610                                                              -                   --------->At4g35610                                                           <---                 <---------ANAC46                                     --------->ARR11(3)    <--------              --------->ALFIN1                          ----------------->AGL1              ---------           --------->DAG2                         ------>ZmHOX2a(1)  <---------GLK1(1)     ------>MYB46(1)     --------->ZAT18 --------->WRKY38(1)   <----------DOF2           --------->GLK1(1)     ------>MYB83     --------->At4g35610            <-----------GT1 ---------->DOF2 <---------ARR11(3)   <---------MYB59 ->CCA1(2)---------->DOF2         ------->TEIL   --------->TOE2(3)  --------->ARR11(3)  -------------   aagtatgagcacaaaagtggccgatgactcaaaatgtatttccatctttctccttaatgcccaaacgagagatatcatctatagctcgataccaaatcca  802700            --------->ANAC58            --------->ANAC58            --------->ANAC46            <---------ANAC55(2)     --------->ICU4                                                               --------->ANAC46 ---------ANAC55(2)     --------->ANAC58                                          --------->ANAC58 -- -------->ANAC55(2)     --------->ANAC58                                          --------->ANAC58<-- ------MYB52(1)         --------->ANAC46                                        ---------->DOF2  ---- -ARR14(2)  --------->ANAC55(2)             <---------ARR14(2)              <---------ANAC46    <---- >ARR14(2)  --------->ANAC55(1)       --------->DAG2                   <---------ANAC58     ------->MYC3 ---->AGL1<-----------GT1           ---------->DOF2     --------->ICU4 <---------ANAC58     <-------MYC3   ttaagtaagtattcacgtaatgtagtaagcaacttctcaaaaggccaatcccatggccatgagtaagtgaatggcatgtcgtttaagcaatgcatatggg  802800                                                                            --------->GLK1(2)                                                                            --------->ARR11(3)                                                                            <---------ARR11(3)                                                                            --------->ARR14(3)                            <---------LBD16                                 <---------ARR14(3)    ---                            --------->LBD16                             --------->TOE2(3)        <---                           <---------ANAC58                             ------->GAMYB  <---------AHL20(2)                           <---------ANAC58                             --------->YAB1<---------AHL20(2)           ----------->GT1 <---------ANAC46                           -------->P      --------->AHL20(2) ------->WOX13(1)   <<<<<<<<<<GT-3b                                   ------>MYB46(1)<---------YAB1 -------WRKY38(1)<---------AHL20(1)               --------->ATHB12    ------>MYB83<---------YAB1----- ----->WRKY18(1) --------->AHL20(1)--------->YAB1<---------YAB1  <-----------GT1----------->GT1------ -------HVH21   --------->ICU4     --------->TOE2(3)       <-------TEIL--------->MYB46(3)     <------   tcaatccaatctctggtaatatttttcttccgtggaatgttaatggatttgatgatttgagttcatttatccaaccaaaatcttgttattaattcaatta  802900                                                      <---------ICU4                                                      --------->YAB1                                                      --------->ATHB51                     <---------                                                     <---------ATHB12                      ----------                                      --------->CCA1(2)                                   ------>ZmHOX2a(2)                             <---------ICU4          <---------ATHB51                     -----------                            <---------------AGL15    --------->ICU4                       <----------                     --------->AHL20(2)      --------->AHL20(2)             --------->AHL20(2)        --------->YAB1      --------------->AGL15------------>CBF           <---------AHL20(2)<------ ------>YAB1         --------->AHL20(1)      <---------AHL20(2)     ----------->GT1   <-------TEIL--- ------YAB1          <---------AHL20(2)<-------TEIL--------->WOX13(1)--------->YAB1  <--------P  ---- ---->AHL20(2)--------->ANAC58       <---------ARR14(2)      <------------CBF     <---------TOE2(3)-- --->YAB1     --------->ANAC58       --------->ARR14(2) <---------TOE2(3)  --------->AHL20(2) ------- ---ATHB51  ---------->DOF2 =========================================================================   taatcaactaaaataaaagcaaattttttgctaattacagatacaaataaaatcaattatggaaattgaaatgaaaattaaaatgaggttgatctatata  803000     ----------->GT1   <---------WOX13(1)  <------------CBF ------AGL15 ----->AGL15 ------>AGL2 -------AGL3                                           ----------->GT1 ---ARR14(2)                                         ----------->GT1 -------->GT1                                    <---------ETT(2) ----->ANAC46              ----------->GT1       --------->ETT(2)                 <---------MYB52(1) ------->At5g28300 ----------------->AGL2       <--------P                       <-----------HVH21 -->ARR14(2)--------->TOE2(3)              --------->DAG2                  --------->AtMYB61     <--- ======MADS_MADS --------->ZAT6    *TSS   ---------->DOF2       ----------->RAV1(1)<---------ANAC46   cggtaattggtaaatgttaacaccaaaaacagataaaaacacaaaaaagggtagacagagaaaaaacaacacagagacctctccgtcgtgttctctcccc  803100                      <---------ANAC46                     <-------TEIL                  <---------At4g35610                                              <-----------GT1                  <---------HSFC1(2)                                             --------->ARR11(3)                  --------->At4g35610                                           --------->GLK1(1)                  --------->HSFC1(2)                                            <---------GLK1(1)               <--------P                                                       --------->RVE1(1)              <---------MYB52(1)                                                --------->CCA1(1)            <---------HSFB2a(2)            <---------ANAC55(2)                 <---------ARR11(3)            --------->HSFB2a(2)            --------->ANAC55(2)                 --------->ARR11(3)           <---------LBD16        ------>ZmHOX2a(1)   --------->DAG2       --------->TOE2(3)  <------        <----------DOF2           <-----------RAV1(1)---------->DOF2  <---------WOX13(1)      ------- ------ALFIN1--------->LBD16  <-----------GT1 --------->ATHB12     <---------YAB1<---------ARR11(3)   ctctcttgaactttccggtaagcttcgtcgattttcctgttggacaagtgattgtaaaagtagatagttttgattaacctagatatctccattcttgtag  803200                                                                                       --------->ZAT18                                                                                       <---------ZAT18                                                                                   ------>ZmHOX2a(1)                                                                                  <---------ANAC58                                                                   --------->TOE1(3)   <---------ZAT14                                                          <---------ANAC46        <---------ANAC58                                                      ------>ZmHOX2a(2)    <---------ANAC58                            <---------MYB46(3)        ====================================HOX2a_HOX2a                           <---------WOX13(1)        --------->At4g35610   <---------ANAC46 ---HSFB2a(2)           <---------YAB1               <---------At4g35610   <---------ANAC58         - -->HSFB2a(2)   <-----------HVH21                <---------WOX13(1)--------->TOE2(3)   --------->ZAT14   aaacttcacctatagctcagtcgggtctgattgttacttcgaattgagtcgattgatctgccttataaaccctaatttcgtggtccttgtgcactctcac  803300                                     --------->ZAT2                                     --------->At4g35610             <---------YAB1          <---------At4g35610          <---------MYB52(1)      --------->LBD16<-----------GT1      ------->TEIL                ------>ZmHOX2a(1)                     <---------ARR14(2) -------->ARR14(2)              ----------->RAV1(2)                     --------->ARR14(2)   agtttccgaacccttattcttgattttctgaatttcctgagctctctcttgttactaatttgatttgaaagatggatttgggagtcaattcttctcatcg  803400                                                                 <XXXXXXXXXXXXXXXXXXXXMIR161.2                                                              <------MYB46(1)                                                              --------->MYB55(2)                                                              <------MYB83                                                              <---------MYB46(3)                                                              --------->MYB52(2)                                   --------->YAB1           <---------MYB52(1)                                  <---------YAB1           <-------GAMYB                         <---------MYB52(1)       --------->ARR11(3)<----------DOF2                        <-------GAMYB<---------YAB1   --------->At4g35610                     <------                       --------->MYB52(2)         <---------ARR11(3)<---------DAG2            -------                       <---------MYB46(3)        --------->YAB1<-------GAMYB      <---------TOE2(3)   atggctctgggttttgaaattgagttcgttgtttctatgatttttgagcaaatatcatctccgttggttacttttagtgtgtttaagtttttgaacagct  803500  Previous    Next  AGI:  At1g03280.1    Description:  transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein. similar to transcription initiation factor [Arabidopsis thaliana] (TAIR:AT4G20340.1); similar to Os08g0343300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061594.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ72889.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Transcription factor TFIIE, alpha subunit; (InterPro:IPR002853) Range:  from: 803035    to: 807066    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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