Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      <-----------RAV1(2)  <---------------------WRI1  ------>NtERF2 ---------RAP2.6(2) ------->SPL7                                                                                       - --------LBD16                                                                                     <- --------HVH21                                 --------->O2                                       --- ---TGA1a                                      <---------O2                                      <--- -->TGA1a                                 --------->ANAC58         ------>ZmHOX2a(1)             ---- ---O2                             --------->ANAC58              ----------->RAV1(2)            <---- ------------SPL14        <-----------GT1 --------->ANAC58   ------->TEIL                      <----- -->O2              <------NtERF2  --------->ANAC58         <---------CCA1(2)            <-------TEIL   gtccggccaggctctcaagggcctcaattttcttctcaagcgagaggccacgagaaacacttgtatctcctgcaagtgaaaccctaagaaattcattccc  795000   --------->ANAC58   <----------ID1   --------->ANAC58                                                                               ---   ----------->GT1                 --------->TOE2(3)                                             <--- -------->ARR14(2)              --------->GLK1(1)                                                ---- -----ZmHOX2a(1)            --------->YAB1                                                       ---- ------>ANAC46        =============================================================================== ------TOE1(2)        --------------->AGL15                                                      <--- ----->LBD16          <---------------AGL15                        <---------LBD16               <--- -----LBD16     <---------GLK1(2)  --------->TOE1(3) --------->AHL20(2)      --------->YAB1    <----- ----LBD16  ---------->DOF2<---------YAB1   ----------->RAV1(2)  <---------REM1(2)    ------->TEIL<--   aggaaacgaaaaaaaaaagaatttctgttatcagaaaccctaattcccctgtacataaatttctctaaacacgggcctatcaaaaatgaacttcgaatta  795100                                                          <---------WOX13(1)                                                        --------->ATHB12                                                       --------->ICU4                                                    ------------>ATHB5                                                    <------NtERF2                                                  >>>>>>>>>AtERF-3                                                  --------->RAP2.6(2)                                                  --------->ANAC46                                                  >>>>>>>>>AtERF-4                                                  >>>>>>>>>AtERF-2                                                  >>>>>>>>>AtERF-1                                                  --------->RAP2.3(2)                                                  --------->DEAR3(1)         <------ZmHOX2a(2)                        --------->RAP2.3(3)               <---------At4g35610 <----------DOF2                                  >>>>>>>>>AtERF-5                  --------->LBD16 ==================================bZIP_DOF      --------->ATERF1(1)                --------->At4g35610 ------------>AGL15                              --------->RAP2.3(1)            <---------ARR14(2) --------------AG                                --------->MYB46(3)             --------->ARR14(2) ------------->AG                 ------>NtERF2 --------->At4g35610            <---------GLK1(1) ------------->AGL1               <------NtERF2 <---------At4g35610            --------->GLK1(1) =============MADS_MADS           --------->LBD16--------->ERF1     <---------AHL20(2) --------------AGL2              --------->DEAR3(1)------>NtERF2   --------->AHL20(2) --------------AGL1      --------->TGA1a        <---------ATERF1(1)<---------AHL20(2) ------GT1    --------->YAB1    --------->RAP2.3(1)<---------RAP2.6(3)        ----------->ARR10 -------------AGL15      --------->O2----------->HVH21 <---------YAB1        <------ZmHOX2a(1)   cctctttggggatcaataagaaggctctcgtctcgccgcatgacattggtagccgccatgattgaacaattaaatgtgaggaaatccgctgatttgaaca  795200                                                                                                 ----                        <----------DOF2                           <---------YAB1       --------->ANAC58                <-----------ARR10                       <---------ARR14(2)             --------->ANAC46         --------->MYB52(1)                        --------->MYB52(1)   <---------TOE2(3)     -------       --------->DEAR3(2)               <----------DOF2 --------->ARR14(2)<-------GAMYB--------->ANAC58       --------->MYB46(3)   ---------->DOF2 <----------DOF2     --------->YAB1    --------->ANAC46   gaaaaccgagccaacgagactcttctctttcaaaggaagtctctttctttcgctaatggattcgaattgtaattggggttacagacaccacgaaaatgat  795300                                                            <---------TGA1a                                                            --------->ANAC55(2)                                                            --------->ANAC58           --------->ARR14(2)                                                            --------->TGA1a            <---------ARR14(2)                                                            --------->ANAC58  --------->KAN4(1)                                                            <---------ANAC55(2)     --------->LBD16                                                            --------->ANAC46  <---------KAN4(1)                                                            --------->ANAC55(1)--------->KAN4(2)                          --------->ARR14(2)              <---------ALFIN1    <----------TaMYB80                          <---------ARR14(2)            <---------ALFIN1     <---------KAN4(2)           --------->ANAC58                           --------->ANAC58       ---------->TaMYB80 -->ZmHOX2a(2)----------->RAV1(1)          --------->AHL20(2)       *TSS --------->ANAC58         <-- -->ATHB12 --------->ANAC58          ----------->GT1  --------->ANAC58   --------->ANAC58<-----------   cggagacgaaggaaggcaacaattttgggattcggagtttagaaaaaaaatggcagacgcacacgtatgaaggccaaggaatatgcccgaatattgatat  795400                                                                      <---------AHL20(2)                                                                      -------->ATHB1                                                                      -------->HAHB4                                                                      <---------ICU4                                                                      --------->ATHB51                                                                      --------->ATHB12                                                                     <---------ATHB51                                                                     --------->ICU4                                                                     <---------YAB1    <------MYB83                                                                  ------------>ATHB5 <---------MYB52(1)                                                                 <---------MYB52(1)  <--------P                                                               --------->LBD16       --------->ALFIN1           ----------->HVH21                                   ----------->GT1      <---------MYB52(1)          <---------MYB59                                    <---------LBD16       <---------MYB46(3)         <---------O2                                   <---------AHL20(2)       <------NtERF2         --------->O2                                  --------->AHL20(1)       --------->MYB52(1)         --------->ZAT2                                <---------AHL20(1)       ------>NtERF2   -------->P                                          <---------AHL20(2)     --------->ATERF1(1)  <-----------GT1         <-----------GT1              --------->AHL20(2)<---------REM1(1) ---------GT1   ----------->HVH21        <------ZmHOX2a(1) <-----------GT1    --------->MYB46(3)    - -CBF    ----------->RAV1(2)          <---------ICU4  --------->AHL20(2)<---------YAB1 <------MYB46(1)   tttctaacccgacctgactcgaccgattcaaccggtctgataaggactcgagtcaaattaatttccggttaattattgtagccaccggttgggcattctt  795500                                                      --------->MYB52(1)                                                     --------->TOE1(2)                         --------->AHL20(2)         --------->MYB46(3)             <---------YAB1         --------->ARR11(3)        --------->YAB1<----------ID1      <---------ZAT14         <---------ARR11(3)<----------TaMYB80 ---------->DOF2--------->AHL20(2)  --------->YAB1   <-----------GT1 --------->TOE1(3)        <---------MYB52(2)       --------->ZAT14--------->YAB1 -------->ANAC46   --------->TOE2(3)  --------->YAB1<---------MYB52(2)      ----------->GT1  --------   acaagttacaagatttcaaaacctcaagtatataccaaaataatcaactaaagaacaaacgaattaaactgtgaagtatggtattatgatgctatacaaa  795600                                --------->ANAC46                                                  ---                               --------->HSFB2a(2)                                               <---                               <---------HSFB2a(2)                                            -------        <-----------GT1       <---------ANAC46                                               <-------     --------->YAB1  --------->ANAC58                                 <---------AHL20(2)   ---------- ->ANAC46            --------->ANAC58  <-----------GT1                <---------YAB1   <---------MYB46(3)   acgtttctaataactcactcggtaagaaaatttcgcgaaatttacaaactcaagaggtttcttcttgtctatattattcaagtattggatgggtcgattc  795700                               <---------ARR14(2)                               --------->ARR14(2)                              <------NtERF2                             <---------MYB46(3)                          --------->ABI4(2)                          <---------MYB46(3)                          --------->MYB55(2)                         --------->ALFIN1                         <---------AtMYB61                         <---------DEAR3(1)                        <---------MYB52(1)                <-----------TGA1                       --------->LBD16                   <---------bZIP60(1)                     <---------LBD16                 --------->HSFC1(2)                     ------>ZmHOX2a(2)               <---------HSFC1(2)                    <------ZmHOX2a(2)                <---------HSFB2a(1)                    --------->CCA1(2)                --------->HSFB2a(1)                    --------->ARR14(1)          --------->ANAC58                   --------->ARR11(1)           --------->ANAC58                   <---------AGP1               <---------ANAC55(2) ------>YAB1       --------->AGP1              --------->SPL7 ------YAB1        <---------ARR14(2)          <---------LBD16 -->GLK1(2)        --------->ARR14(2)        <---------SPL7       <<<<<<<<<TBF1 --GLK1(2)         --------->ARR11(3)   ------>ZmHOX2a(2)--------->bZIP60(2)     --------------->AtSPL8 ->ARR10          <---------GLK1(1)    <------ZmHOX2a(2) --------->bZIP60(1)     --------------->AtSPL3   tgataacgagaggctcttgtagatccggtggtggctctgcgatcgggagtacggaagcgtcgtcattcttcttcccatctaattcagtaccattctcagc  795800                                                              --------->bZIP60(2)                                                            ----------->RAV1(1)                                                            <---------ALFIN1                                                          --------->ANAC58                                                         --------->PCF2                                                         ------->TEIL                                                       --------->ZAT18                                                       <---------ZAT18                                                       <---------ZAT14                                                       --------->ZAT14                                                    <---------At5g28300                --------->ATHB12                <---------ICU4--------->ANAC46               <---------YAB1                --------->YAB1--------->MYB46(3)     ---------->DOF2             --------->YAB1        <---------YAB1  <-----------GT1--------->WOX13(1)     ----------->GT1   <----------DOF2      <---------ALFIN1    <---------YAB1--------->ANAC58  ----------------->AGL3   caatgctttgtccaaggatgatttcgccactcttgttatgcatattatcagaattactgcacccacatcattcaaaaacccaaaaaaagacgggttaaaa  795900  Previous    Next  AGI:  At1g03250.1    Description:  similar to unknown [Populus trichocarpa] (GB:ABK96006.1); contains domain R3H domain (SSF82708) Range:  from: 793353    to: 795368    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g03260.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19070.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71095.1); similar to Os07g0655900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060500.1); contains InterPro domain SNARE associated Golgi protein (InterPro:IPR015414) Range:  from: 795532    to: 798463    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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