Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            <---------------AtSPL8                                          <---------------AtSPL3  --------->ANAC58                  ------>ZmHOX2a(2)  --------->ANAC58                 <-----------------AGL1 ------>ANAC46         ------>ZmHOX2a(1)  --------------->AtSPL8 ------>ANAC58         ====================HOX2a_HOX2a ------>ANAC58        <XXXXXXXXXXXXXXXXXXXXMIR824 -ZAT18            <-----------GT1--------->ARR11(3)                                   --------->ARR11(3) >ZAT18         <---------GLK1(2) <---------ARR11(3)                                   <---------ARR11(3) >ZAT14    ----------->RAV1(1)  <---------ATHB12          <-----------GT1     --------->ANAC46 -ZAT14   <----------ID1  ----------->RAV1(1)             --------->YAB1    --------->ANAC46<--------   acgcaagacaatgcaacaaattctcctcccacaaatgatctaatatggtacttctcttattcacaattctccagttacacactaaacaagttcttgacca  775100                                        --------->DAG2                                 --------->ANAC55(2)                                 ----------->GT1                             <---------DDF1                            <<<<<<<<<<bZIP23                            <---------ETT(2)                    --------->At4g35610                            --------->ETT(2)                -------->P                            >>>>>>>>>>bZIP23               --------->WOX13(1)                            >>>>>>>>>>bZIP19       <----------DOF2                            <<<<<<<<<<bZIP19      <---------ANAC58             ----------------------        <-----------HVH21  --------->DDF1         <---------ANAC58     --------->YAB1          ------ -WRKY18(1)          <---------YAB1    ---------->DOF2    --------->MYB46(3)   <----------DOF2<------   tgccttactgtgtcattgcaggtatcaatgtcgacatgtgataaagggattagctttccatcaaccagttgaagaataagactttagagtttgtttgtat  775200                                                                                 --------------->AtSPL8                                                                                 <---------------AtSPL3                                                                            ----------->HVH21                                                                          --------->At4g35610                                                                          <---------At4g35610                                                                   --------->ARR14(2)                                                                   <---------ARR11(3)                                                                   <---------ARR11(1) ->TaNAC69(2)        <-----------RAV1(1)                           --------->ARR11(3) ->TEIL <---------REM1(1)  <---------------AGL15                   <---------ARR14(2) ---CCA1(2)<-----------GT1 --------------->AGL15                  <---------CCA1(2)--------->ZAT14   ctctctattgttgtaactaaaccctgttgcaaattttagaaaaaaaccagcattgttgaaacaattccaaatcttgagatgacattgtactactactact  775300                                                                                     ------>MYB83                                                                                     ------>MYB46(1)                                                                                   <---------MYB59                      <-----------GT1                                       --------->AHL20(2)    ---               <---------MYB52(1)<------ZmHOX2a(1)   <---------AHL20(2)     <---------AHL20(2)<------              <-------GAMYB   --------->YAB1    <---------AHL20(2)     <---------TOE2(3)      -------             <-----------RAV1(1)<---------YAB1 --------->AHL20(2) ----------->GT1  --------->TOE2(3)   gcatactctaatactctgttgttttaacaaaatcaggattgttcaactattttatatttttggacgaattgttaacatttaaaaacctaattttgtcgag  775400                                            <---------AHL20(2)                                       <---------AHL20(2)                                   --------->AHL20(2)                                   <---------AHL20(2)                         <---------WRKY12  <---------AHL20(2)            ---------->DOF2  --------->ANAC58        <-------TEIL    --------->WRKY18(1)--------->AHL20(2)                <----------DOF2 -------- -------->GT1          <-----------HVH21--------->AHL20(2)          <----------ID1       <----------- ---HSFB2a(2)         ----------->GT1  --------->AHL20(2)       ---------->DOF2  <---------TOE2(3) -->HSFB2a(2)--------->DAG2  --------->ANAC58            --------->ICU4 ---------->DOF2  ------------   aagtttaatatacataaagttagggggtcaaacgcattaaaataaataaatagggggtcagaatgaaaaagaaacaaagctttaagtttttctaataaga  775500                                                                                              -------                                                              <<<<<<<<<TBF1                <---------At4g35610                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->At4g35610                                                     <<<<<<<<<TBF1  <<<<<<<<<TBF1       --------->At4g35610                                                   <------------------------ANAC81      <---------ZAT2    ------>ZmHOX2a(1)                            <-----------GT1 <<<<<<<<<TBF1    --------->TOE2(3)<- ------>ZmHOX2a(1)                      --------->RAP2.6(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  -- ->YAB1                    *TSS         --------->ANAC46   <<<<<<<<<TBF1  <<<<<<<<<TBF1 <---------At4g35610 ----AGL15         ----------->GT1      --------->ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)------- --->AGL15 <---------MYB52(1)           --------->ANAC58<<<<<<<<<TBF1  <<<<<<<<<TBF1 ---------->DOF2   gtcctcctcttctgtttgctctggttacttcggcaaacacagacgcaaaattttcttcttcttcttcttcttcttcttcttctaccttgaagctgctacc  775600                                           --------->At4g35610                                           ----------->RAV1(2)                                      --------->YAB1                                      <---------ICU4                              --------->HSFB2a(1)                              <---------HSFC1(2)   ------>ZmHOX2a(1)          --------->HSFC1(2) ->P            --------->YAB1<---------HSFB2a(1)            <---------MYB52(1)  ------>ZmHOX2a(2) --------ARR14(2)             <---------At4g35610          ------>ZmHOX2a(1)   <---------ARR11(3) ------->ARR14(2)             --------->ZAT2               =============================HOX2a_HOX2a -->MYB52(1)<---------MYB46(3)--------->At4g35610      <-----------GT1      <----------DOF2     <----   ggttcctctctcagtcgttgataacacatcgaagcttccattatcacctgtaagttttctcctgttatcttctcttcgcttgatctcaattgttccttct  775700                                                ----------->GT1                                               --------->DAG2                                              ---------->DOF2                                   <---------ANAC58                          --------->MYB52(2)                                   <---------ANAC46                <---------TOE1(3)                    --------->ANAC46<---------TOE1(2)              <---------TOE2(3) ------DOF2    <-----------GT1     <---------ANAC58  <---------ARR14(2)    <---------MYB52(1)   ttctcgttgttcgggtttatctactccaacttgaatcgcttgttttgctaaagtgaattcgagttttttagggttttgttagttctaatgccaatttcga  775800                                      --------->ANAC58                                      --------->ANAC46                                      --------->ANAC55(1)                        <----------DOF2           ===================HOX2a_HOX2a           <------ZmHOX2a(1)          --------->ANAC55(2)        ======================HOX2a_HOX2a   ------->GAMYB   --------->YAB1        <------ZmHOX2a(1)             <---------ANAC55(2)<---------ICU4   --------->LBD16       <------MYB46(1) ------>ZmHOX2a(2)   <------------MYB.PH3(1)       --------->HSFB2a(2)       <------MYB83  <---------ARR11(3)    <------------AtMYB77----------->RAV1(1) <---------YAB1XXXX      --------->MYB111(2)             --------->ANAC58 <---------DAG2--------->GLK1(1)          XXXXX     <--------P      --------->ARR11(3)  --------->MYB52(1)<---------YAB1<---------HSFB2a(2)    XXXXX   tttctaggtaggaggaagaagatgatctttaaaatcgaagacgtaactgtctacttcccttatgacaacatatatccagaacaatatgaatacatggttg  775900                                                    --------->ARR14(2)                                                    <---------ARR14(2)                                                  --------->LBD16                                                 <---------HSFB2a(2)                                                 --------------->AGL15                                                 <---------------AGL15                                                 --------->HSFB2a(2)                                                <-----------------AGL2                                                ----------------->AGL1                                                <-----------------AGL1                    --------->MYB52(1)          <---------LBD16                  <----------CDC5              ------>MYB46(1)                --------->ANAC46               ------>MYB83                --------->ANAC58               --------->MYB52(1)                         --------->At4g35610 ---------->DOF2--------->ANAC58               -------->P                                 --------->ZAT2 XXXXXXXXXXXXXXXX>MIR159A                     --------->MYB55(1)                     <-----------GT1 XXXXXXXXXXXXXXX>MIR159C            --------->HSFB2a(2)         --------->ATHB12    <---------ATHB12 XXXXXXXXXXXXXXX>MIR159B            <---------HSFB2a(2) ----------->GT1             --------->MYB46(3)   aattgaagcgagccctagacgctaagggacattgtcttctcgagatgcctaccggaactggtaaaaccattgctcttctctctctaatcaccagctatcg  776000  Previous    Next  AGI:  At1g03180.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO22520.1); contains InterPro domain Prefoldin (InterPro:IPR009053) Range:  from: 773411    to: 775344    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g03190.1    Description:  ATXPD/UVH6 (ULTRAVIOLET HYPERSENSITIVE 6); ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding. Identical to DNA repair helicase UVH6 (UVH6) [Arabidopsis Thaliana] (GB:Q8W4M7;GB:Q9SE44;GB:Q9ZVS1); similar to helicase-related [Arabidopsis thaliana] (TAIR:AT1G79950.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22519.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ63090.1); similar to hypothetical protein OsJ_016336 [Oryza sativa (japonica cultivar-group)] (GB:EAZ32853.1); co Range:  from: 775527    to: 780027    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version